BAC Information

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BAC

Clone NameB6Ng01-027N24
Chromosome5 (Build37)
Map Location 37,436,537 - 37,562,926
singlet/doubletdoublet
Overlap geneJakmip1, EG330070, Gm1043
Upstream geneSorcs2, 2310020A21Rik, Grpel1, Ccdc96, Tbc1d14, D5Ertd579e, LOC100040278, LOC100040825, Cno, Mrfap1, Man2b2, Ppp2r2c, Wfs1
Downstream geneLOC100040936, Crmp1, Evc, Evc2, LOC100040355, LOC100040988, Stk32b, Cytl1, Msx1, Stx18, Nsg1, LOC100040397
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027N24.bB6Ng01-027N24.g
ACCDH858502DH858503
length1,076976
definitionDH858502|Mus musculus domesticus DNA, BAC clone: B6Ng01-027N24, 5' end.DH858503|Mus musculus domesticus DNA, BAC clone: B6Ng01-027N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,561,846 - 37,562,926)(37,436,537 - 37,437,526)
sequence
gaattctttcctctacatgaagccaaacttcgtgaggggatgtttcagga
ggtaaataaatgaatacatgaatgcataaacatatatataaatgcatgca
tacatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaggt
tcagaatcacagagtcatgtcaggacaccactttcagttcagctttgttc
tttaggacaagaggcagaaggcagaagttgggatcagaggtttgccacag
tgtcaggaagaattcagatccagtttttaagaccagatgattggagtggc
acagagtacagaagaaggagacctccaaggctggggagctctggggagtt
ccagtgtccctcgggtctcattatctctggatagggaggcaagacctgct
ctgtgggtggccagggaggttcactaaggtaatgtgggtgtcttgggata
gctcacaccagacgcacttatttggggcttcttttcaccccaccctactt
ctcagctaggtctcagcacattgcatcccactcactcaaactgtcctctc
tcaattatattcttcaaatctatcacttccccaggggggcacaccactgt
acacatagcgggccatccaggccccactgatctgcatatccaaaaatccc
tctggcctcacctgtctatgctcagaccctggcaggtctctctgaagctt
gcctatggtccttgctaacaccatcatgtgggggtctggtccgtctccaa
cacagctaggggactcttctgagaactggcctagaacagcaagatcctga
ggttaaaaatccctcatggaagacctattacaatagccaccaagaaccat
gactctcttgactctcttttagcccacagtgactcctggtgcgctccact
cctctgccagtgaggacttgaagctggagatgtgcatgacttcccaactg
tgagcaaaggaactgtttctcaagtacctccgtggacaatagctggaaca
tgtccatgaagccttaggaccctcagtgtcctcatcgtcagcaggcggtg
cccctctcccaatccctgccagcttt
gaattctgccctacaaaataagggaaataatggatctttctccaagaagt
tcagagcactaaaataatgtgtcagttaccccgccccccaaggtgttata
ccatctcagaaggggcagccacccaccctcacactcgcaggatggctggg
gctctttgggctctctttctcatgaatggagctagcttgaccttttctct
gattgacctgacagcaactttgtggttctagcctccgggcctagcataat
aaatggtccctataagtcacactcctgaacaggttaggacaaaagacaat
agagccattccctgtggctgtaaccacttgctgaacacattgtctaagga
attcacccttcctgctggattactagcaggtggttatttctttatatata
tttcatgaatgtgtgttggcaattgtgttcacatgtgtgtgcatgtgtat
atatgtctgtgtaccgtggagccccgcccccaaacctcccaggatgacat
catttgccttccttgatcactctccacctattgacaaaaagtctcttact
gaacctggagcttgccatgtcaaccagtctgagtagccagtttgctctgg
agcaccacctgtctctggctctcctgtgctgggattgcaggaggaccctc
atacctactcctttttttttttttttttttttttttttttttttttgggt
tttcgagacagggtttctcctgtatagccctgggctgtcctggaactcac
tgtataagaccaggctgggcctggaactcaaaaatcagcctggctctgcc
tcccgagtgctgggattaaagcgtgcgctaccacgaccggctgaatacct
actccttttatgtggtcttgaagactgaactctaggccttaatcataggc
atcagagactgtcttggtgtgaagagctattcaaagcttcgagcacgatt
gtctaaagcatgcacagtttgcactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_37561846_37562926
seq2: B6Ng01-027N24.b_48_1123 (reverse)

seq1  AAAGCTGTGCAGGG-TTGGGGGAGGGGCATCGCCCTGCTGACGGATGAGG  49
      ||||||| |||||| ||||| |||||||| || ||||||||| |||||||
seq2  AAAGCTG-GCAGGGATTGGGAGAGGGGCACCG-CCTGCTGAC-GATGAGG  47

seq1  ACACTGAGGGTCCTAAAGGCTTCATGGACATGTTCCAGCTATTGTCCACG  99
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACACTGAGGGTCCT-AAGGCTTCATGGACATGTTCCAGCTATTGTCCACG  96

seq1  GAGGTACCTTGAGAAACAGTTCCTTTGCTCACAGTTGGGAAGTCATGCAC  149
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTA-CTTGAGAAACAGTTCCTTTGCTCACAGTTGGGAAGTCATGCAC  145

seq1  ATCTCCAGCTTCAGGTCCTCACCTGGCAGAGGAGTGGAGCGCACCAGGAG  199
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  ATCTCCAGCTTCAAGTCCTCA-CTGGCAGAGGAGTGGAGCGCACCAGGAG  194

seq1  TCACTGTGGGCTAAAAGAGAGTCAAGAGAGTCATGGTTCTTGGTGGCTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGGGCTAAAAGAGAGTCAAGAGAGTCATGGTTCTTGGTGGCTAT  244

seq1  TGTAATAGGTCTTCCATGAGGGATTTTTAACCTCAGGATCTTGCTGTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAGGTCTTCCATGAGGGATTTTTAACCTCAGGATCTTGCTGTTCT  294

seq1  AGGCCAGTTCTCAGAAGAGTCCCCTAGCTGTGTTGGAGACGGACCAGACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGTTCTCAGAAGAGTCCCCTAGCTGTGTTGGAGACGGACCAGACC  344

seq1  CCCACATGATGGTGTTAGCAAGGACCATAGGCAAGCTTCAGAGAGACCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATGATGGTGTTAGCAAGGACCATAGGCAAGCTTCAGAGAGACCTG  394

seq1  CCAGGGTCTGAGCATAGACAGGTGAGGCCAGAGGGATTTTTGGATATGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTCTGAGCATAGACAGGTGAGGCCAGAGGGATTTTTGGATATGCA  444

seq1  GATCAGTGGGGCCTGGATGGCCCGCTATGTGTACAGTGGTGTGCCCCCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTGGGGCCTGGATGGCCCGCTATGTGTACAGTGGTGTGCCCCCCT  494

seq1  GGGGAAGTGATAGATTTGAAGAATATAATTGAGAGAGGACAGTTTGAGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGTGATAGATTTGAAGAATATAATTGAGAGAGGACAGTTTGAGTG  544

seq1  AGTGGGATGCAATGTGCTGAGACCTAGCTGAGAAGTAGGGTGGGGTGAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGATGCAATGTGCTGAGACCTAGCTGAGAAGTAGGGTGGGGTGAAA  594

seq1  AGAAGCCCCAAATAAGTGCGTCTGGTGTGAGCTATCCCAAGACACCCACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCCCAAATAAGTGCGTCTGGTGTGAGCTATCCCAAGACACCCACA  644

seq1  TTACCTTAGTGAACCTCCCTGGCCACCCACAGAGCAGGTCTTGCCTCCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTAGTGAACCTCCCTGGCCACCCACAGAGCAGGTCTTGCCTCCCT  694

seq1  ATCCAGAGATAATGAGACCCGAGGGACACTGGAACTCCCCAGAGCTCCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAGATAATGAGACCCGAGGGACACTGGAACTCCCCAGAGCTCCCC  744

seq1  AGCCTTGGAGGTCTCCTTCTTCTGTACTCTGTGCCACTCCAATCATCTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGAGGTCTCCTTCTTCTGTACTCTGTGCCACTCCAATCATCTGG  794

seq1  TCTTAAAAACTGGATCTGAATTCTTCCTGACACTGTGGCAAACCTCTGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAAACTGGATCTGAATTCTTCCTGACACTGTGGCAAACCTCTGAT  844

seq1  CCCAACTTCTGCCTTCTGCCTCTTGTCCTAAAGAACAAAGCTGAACTGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTTCTGCCTTCTGCCTCTTGTCCTAAAGAACAAAGCTGAACTGAA  894

seq1  AGTGGTGTCCTGACATGACTCTGTGATTCTGAACCTCATTCATTCATTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGTCCTGACATGACTCTGTGATTCTGAACCTCATTCATTCATTCA  944

seq1  TTCATTCATTCATTCATTCATTCATTCATGTATGCATGCATTTATATATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCATTCATTCATTCATTCATTCATGTATGCATGCATTTATATATA  994

seq1  TGTTTATGCATTCATGTATTCATTTATTTACCTCCTGAAACATCCCCTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATGCATTCATGTATTCATTTATTTACCTCCTGAAACATCCCCTCA  1044

seq1  CGAAGTTTGGCTTCATGTAGAGGAAAGAATTC  1081
      ||||||||||||||||||||||||||||||||
seq2  CGAAGTTTGGCTTCATGTAGAGGAAAGAATTC  1076

seq1: chr5_37436537_37437526
seq2: B6Ng01-027N24.g_68_1043

seq1  GAATTCTGCCCTACAAAATAAGGGAAATAATGGATCTTTCTCCAAGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCTACAAAATAAGGGAAATAATGGATCTTTCTCCAAGAAGT  50

seq1  TCAGAGCACTAAAATAATGTGTCAGTTACCCCGCCCCCCAAGGTGTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCACTAAAATAATGTGTCAGTTACCCCGCCCCCCAAGGTGTTATA  100

seq1  CCATCTCAGAAGGGGCAGCCACCCACCCTCACACTCGCAGGATGGCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCAGAAGGGGCAGCCACCCACCCTCACACTCGCAGGATGGCTGGG  150

seq1  GCTCTTTGGGCTCTCTTTCTCATGAATGGAGCTAGCTTGACCTTTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTGGGCTCTCTTTCTCATGAATGGAGCTAGCTTGACCTTTTCTCT  200

seq1  GATTGACCTGACAGCAACTTTGTGGTTCTAGCCTCCGGGCCTAGCATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGACCTGACAGCAACTTTGTGGTTCTAGCCTCCGGGCCTAGCATAAT  250

seq1  AAATGGTCCCTATAAGTCACACTCCTGAACAGGTTAGGACAAAAGACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTCCCTATAAGTCACACTCCTGAACAGGTTAGGACAAAAGACAAT  300

seq1  AGAGCCATTCCCTGTGGCTGTAACCACTTGCTGAACACATTGTCTAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCATTCCCTGTGGCTGTAACCACTTGCTGAACACATTGTCTAAGGA  350

seq1  ATTCACCCTTCCTGCTGGATTACTAGCAGGTGGTTATTTCTTTATATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCCTTCCTGCTGGATTACTAGCAGGTGGTTATTTCTTTATATATA  400

seq1  TTTCATGAATGTGTGTTGGCAATTGTGTTCACATGTGTGTGCATGTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAATGTGTGTTGGCAATTGTGTTCACATGTGTGTGCATGTGTAT  450

seq1  ATATGTCTGTGTACCGTGGAGCCCCGCCCCCAAACCTCCCAGGATGACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCTGTGTACCGTGGAGCCCCGCCCCCAAACCTCCCAGGATGACAT  500

seq1  CATTTGCCTTCCTTGATCACTCTCCACCTATTGACAAAAAGTCTCTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCCTTCCTTGATCACTCTCCACCTATTGACAAAAAGTCTCTTACT  550

seq1  GAACCTGGAGCTTGCCATGTCAACCAGTCTGAGTAGCCAGTTTGCTCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGGAGCTTGCCATGTCAACCAGTCTGAGTAGCCAGTTTGCTCTGG  600

seq1  AGCACCACCTGTCTCTGGCTCTCCTGTGCTGGGATTGCAGGAGGACCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCACCTGTCTCTGGCTCTCCTGTGCTGGGATTGCAGGAGGACCCTC  650

seq1  ATACCTACTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTT  700
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATACCTACTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGT  700

seq1  TTTCGAGACAGGGTTTCT-CTGTATAGCCCT-GGCTGTCCTGGAACTCAC  748
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  TTTCGAGACAGGGTTTCTCCTGTATAGCCCTGGGCTGTCCTGGAACTCAC  750

seq1  TGTAT-AGACCAGGCT-GGCCTGGAACTCAGAAATCAGCCTGCCTCTGCC  796
      ||||| |||||||||| ||||||||||||| ||||||||||| |||||||
seq2  TGTATAAGACCAGGCTGGGCCTGGAACTCAAAAATCAGCCTGGCTCTGCC  800

seq1  TCCCGAGTGCTGGGATTAAAGGCGTGCGCTACCACGACCGGCTGAATACC  846
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCCCGAGTGCTGGGATTAAA-GCGTGCGCTACCACGACCGGCTGAATACC  849

seq1  TACTCCTTTTATGTGGGTCCTTGAGAACTGAACTCTAGGCCTTATCAATA  896
      ||||||||||||||||   |||||  ||||||||||||||||||   || 
seq2  TACTCCTTTTATGTGG--TCTTGAAGACTGAACTCTAGGCCTTAATCAT-  896

seq1  AGCCATCAGGAAGGACTGTCTTGGTGTGGACAGAGCTATTCACAGGCTTC  946
      || ||||||    |||||||||||||||   ||||||||||| | |||||
seq2  AGGCATCAG---AGACTGTCTTGGTGTG--AAGAGCTATTCA-AAGCTTC  940

seq1  AGAGCAGCGATTGTCTAAAAGCATTGCCACAGTTTCTGGCACTC  990
       ||||| ||||||||| |||||||   ||||||||   ||||||
seq2  -GAGCA-CGATTGTCT-AAAGCAT--GCACAGTTT---GCACTC  976