BAC Information

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BAC

Clone NameB6Ng01-028B13
Chromosome5 (Build37)
Map Location 46,634,658 - 46,797,218
singlet/doubletdoublet
Overlap geneEG666103
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028B13.bB6Ng01-028B13.g
ACCDH858666DH858667
length818977
definitionDH858666|Mus musculus domesticus DNA, BAC clone: B6Ng01-028B13, 5' end.DH858667|Mus musculus domesticus DNA, BAC clone: B6Ng01-028B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,796,401 - 46,797,218)(46,634,658 - 46,635,286)
sequence
gaattcaatagatcccattagctatagtgtgtgcatagatgtccatgttg
tatatttattcatacttgaatacactactctacttctgccttcttggtga
atgtgtcagattaccatagtctctatgattctaggagcctctaattttct
tacaccatatatagccaagcgtttgaaatttagcatatggagctatattc
taattttttggctctgaaatttttcactcctacaggaaattcaaaaatgg
cacgttgatcactgtaatctatatgaattcaccacttgttaagatctcaa
tgctttaagagtttatgtcctgttgaacacatatgatcactttaattgta
tatatcctgacattcacctttaagtggcacatatcttctaagaggagtat
aatcttttatttagactaaccactgtgctgttataaaattcaaaactcta
taattaaaaaatgatgaattttagcatacagcacatacccaagttttacc
agccctccccagtagtgtcaacattcaagccagcatattgggagctaagt
ttctcagacacaaaacactagtatgcatgttcaaatattatgtatctcat
gatttatatatttcatggtaatactttcaatattcacataaatatcactt
aagtaattagagtattgaatctttctgatcctggttttaaaatatcagtt
cattaaattgtaaagtctagattttcacctacatgtctttccactctatc
attttgcttctggtcaacactgatttaaagtcgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgt
gaattcaaactactaccagaaaacaagaggaagtatccatgcagcccact
ctgctgctgccttgagaccttccaggttggcgttctctctttccatccta
gtgttttgacttgattgctgaatcctccattttctcctcattttctttcc
tttttcttcactttccttcctcttgtctttcattttctcttctaattgtc
ttccccctcttccttctgctattctatttctccattcacgtccttttctt
ttcatctttctttctttattccctccttgttttcttgttttagaagttaa
gaggcgacccaggcctgatctggggcacaagtcccctccactcgactcga
gccccgggctaccttgccagcagagtcttgcccaacacccgcaagggccc
acacgggaccccccacgggatcctaagacctctggtgagtggaacacagc
gcctgccccaatccaatcgcgcggaacctgagactgctgtacatagggaa
gcaggctacccgggcttgatctggggcacaaaccccttcggctccactcg
agccccgggctacctttccagcggagttgcctgacacccaccagggccca
cacaggattccacaggagatcctaagacctctagtgagtggaacacaact
tctgccaggagtctggttcgaacactagatatctgggtacctgccctgca
agaagagagcttgcctgcagagaatactctgcccactgaaactaaggaga
gtgctaccctccaggtctgcttatagaggctaacagagtcacctgaagaa
caagctcttaacagtgacaactaaaacagctagcttcagagattaccaga
tggcgaaaggcaaacgtaagaatcctactaacagaaatcaagaccactca
ccatcatcacaacgcagcactctcaccccacctagtctgtgcaccccaca
caccgaaatctagacccagatttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_46796401_46797218
seq2: B6Ng01-028B13.b_45_862 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACGACTTTAAATCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACGACTTTAAATCAGT  50

seq1  GTTGACCAGAAGCAAAATGATAGAGTGGAAAGACATGTAGGTGAAAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCAGAAGCAAAATGATAGAGTGGAAAGACATGTAGGTGAAAATCT  100

seq1  AGACTTTACAATTTAATGAACTGATATTTTAAAACCAGGATCAGAAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTACAATTTAATGAACTGATATTTTAAAACCAGGATCAGAAAGAT  150

seq1  TCAATACTCTAATTACTTAAGTGATATTTATGTGAATATTGAAAGTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACTCTAATTACTTAAGTGATATTTATGTGAATATTGAAAGTATTA  200

seq1  CCATGAAATATATAAATCATGAGATACATAATATTTGAACATGCATACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAATATATAAATCATGAGATACATAATATTTGAACATGCATACTA  250

seq1  GTGTTTTGTGTCTGAGAAACTTAGCTCCCAATATGCTGGCTTGAATGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGTGTCTGAGAAACTTAGCTCCCAATATGCTGGCTTGAATGTTG  300

seq1  ACACTACTGGGGAGGGCTGGTAAAACTTGGGTATGTGCTGTATGCTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACTGGGGAGGGCTGGTAAAACTTGGGTATGTGCTGTATGCTAAAA  350

seq1  TTCATCATTTTTTAATTATAGAGTTTTGAATTTTATAACAGCACAGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCATTTTTTAATTATAGAGTTTTGAATTTTATAACAGCACAGTGGT  400

seq1  TAGTCTAAATAAAAGATTATACTCCTCTTAGAAGATATGTGCCACTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTAAATAAAAGATTATACTCCTCTTAGAAGATATGTGCCACTTAAA  450

seq1  GGTGAATGTCAGGATATATACAATTAAAGTGATCATATGTGTTCAACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAATGTCAGGATATATACAATTAAAGTGATCATATGTGTTCAACAGG  500

seq1  ACATAAACTCTTAAAGCATTGAGATCTTAACAAGTGGTGAATTCATATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACTCTTAAAGCATTGAGATCTTAACAAGTGGTGAATTCATATAG  550

seq1  ATTACAGTGATCAACGTGCCATTTTTGAATTTCCTGTAGGAGTGAAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGTGATCAACGTGCCATTTTTGAATTTCCTGTAGGAGTGAAAAAT  600

seq1  TTCAGAGCCAAAAAATTAGAATATAGCTCCATATGCTAAATTTCAAACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGCCAAAAAATTAGAATATAGCTCCATATGCTAAATTTCAAACGC  650

seq1  TTGGCTATATATGGTGTAAGAAAATTAGAGGCTCCTAGAATCATAGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTATATATGGTGTAAGAAAATTAGAGGCTCCTAGAATCATAGAGAC  700

seq1  TATGGTAATCTGACACATTCACCAAGAAGGCAGAAGTAGAGTAGTGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTAATCTGACACATTCACCAAGAAGGCAGAAGTAGAGTAGTGTATT  750

seq1  CAAGTATGAATAAATATACAACATGGACATCTATGCACACACTATAGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATGAATAAATATACAACATGGACATCTATGCACACACTATAGCTA  800

seq1  ATGGGATCTATTGAATTC  818
      ||||||||||||||||||
seq2  ATGGGATCTATTGAATTC  818

seq1: chr5_46634658_46635286
seq2: B6Ng01-028B13.g_66_694

seq1  GAATTCAAACTACTACCAGAAAACAAGAGGAAGTATCCATGCAGCCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTACTACCAGAAAACAAGAGGAAGTATCCATGCAGCCCACT  50

seq1  CTGCTGCTGCCTTGAGACCTTCCAGGTTGGCGTTCTCTCTTTCCATCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCTGCCTTGAGACCTTCCAGGTTGGCGTTCTCTCTTTCCATCCTA  100

seq1  GTGTTTTGACTTGATTGCTGAATCCTCCATTTTCTCCTCATTTTCTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGACTTGATTGCTGAATCCTCCATTTTCTCCTCATTTTCTTTCC  150

seq1  TTTTTCTTCACTTTCCTTCCTCTTGTCTTTCATTTTCTCTTCTAATTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCACTTTCCTTCCTCTTGTCTTTCATTTTCTCTTCTAATTGTC  200

seq1  TTCCCCCTCTTCCTTCTGCTATTCTATTTCTCCATTCACGTCCTTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCTCTTCCTTCTGCTATTCTATTTCTCCATTCACGTCCTTTTCTT  250

seq1  TTCATCTTTCTTTCTTTATTCCCTCCTTGTTTTCTTGTTTTAGAAGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTTCTTTCTTTATTCCCTCCTTGTTTTCTTGTTTTAGAAGTTAA  300

seq1  GAGGCGACCCAGGCCTGATCTGGGGCACAAGTCCCCTCCACTCGACTCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCGACCCAGGCCTGATCTGGGGCACAAGTCCCCTCCACTCGACTCGA  350

seq1  GCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAACACCCGCAAGGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGGGCTACCTTGCCAGCAGAGTCTTGCCCAACACCCGCAAGGGCCC  400

seq1  ACACGGGACCCCCCACGGGATCCTAAGACCTCTGGTGAGTGGAACACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGGACCCCCCACGGGATCCTAAGACCTCTGGTGAGTGGAACACAGC  450

seq1  GCCTGCCCCAATCCAATCGCGCGGAACCTGAGACTGCTGTACATAGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCCCAATCCAATCGCGCGGAACCTGAGACTGCTGTACATAGGGAA  500

seq1  GCAGGCTACCCGGGCTTGATCTGGGGCACAAACCCCTTCGGCTCCACTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTACCCGGGCTTGATCTGGGGCACAAACCCCTTCGGCTCCACTCG  550

seq1  AGCCCCGGGCTACCTTTCCAGCGGAGTTGCCTGACACCCACCAGGGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCGGGCTACCTTTCCAGCGGAGTTGCCTGACACCCACCAGGGCCCA  600

seq1  CACAGGATTCCACAGGAGATCCTAAGACC  629
      |||||||||||||||||||||||||||||
seq2  CACAGGATTCCACAGGAGATCCTAAGACC  629