BAC Information

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BAC

Clone NameB6Ng01-028K08
Chromosome5 (Build37)
Map Location 136,921,522 - 137,022,567
singlet/doubletdoublet
Overlap geneCutl1
Upstream geneHip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2
Downstream geneMylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028K08.bB6Ng01-028K08.g
ACCDH859069DH859070
length1,0451,115
definitionDH859069|Mus musculus domesticus DNA, BAC clone: B6Ng01-028K08, 5' end.DH859070|Mus musculus domesticus DNA, BAC clone: B6Ng01-028K08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,021,504 - 137,022,567)(136,921,522 - 136,922,642)
sequence
gaattcctagccaccatttttctgctggtttgggacactgcttagttgta
gtttaagtccttatgagtgtatttattagcccaattttctgttattattc
atggaataccagaagctggatactttttcaagagtaaagctttatttagc
ttacagttttagagacagaaagtccaaacaaccatggtgccagttctgac
aagttccctctatggttgtgtcacctcctgatagatgatataaaggtagg
ctagtgtgagagaagagatgacacagtaagataggatgccggagagtggg
caggtctggctttggtcttttcttttccttctggaactaattaaccaggg
tcccagagaagtacttaattccctctcaggaaaaggaccccagctcctcc
taatgacttctcataggctccgcctcttaaaggttccttgcacattgccc
cactggggaccaaagtaaattaactgctggttctttatagtttttgtact
tattatggtcccctcctcaattttcaaagtgattattgcagtgtcaaggg
agaaggttggttttgctcactgatcgtgaatgagacaagctgacttttac
tggttttgctcgtaacttgatgccggtgcttctttttggtggggataata
gcatgtgcagaatttggcaattctatctgtcccctgttcccactcctgat
gttggagtacctcgttcttttggcctgaacctcagagacccagctgaaca
aaaacttgccttgaagaaatgtgctagggtcgggctgtggtggctcatga
ctttgattccagcatttggggaggcagaggcatgtgactctgagtttgag
gccagcctggtcactgaatttctatagagttcctggacagttagggctac
acgagtacacagatacaaacaacaaacaacaaaacataaccaaagagagt
gtgctgacttggacacgttttagctttactcatcccctcgttcgagaatt
ataactccagtgactgtcgacccttggcaattctttctggtcagt
gaattccagcctaagtttttgttggtgggacagggtctcatgtatcccag
actggtctggaactctctatgtagcagaggatgactttgaacttctgatc
ctcctgcctctacctccagaatggtgagatgacaagcatgtcacacccta
tttattcagtggtggggatagtgtttagggcctcatgcaagctatacaag
cactccagacctcaggtaggtttcagagtattcctactgccttggtcttt
tgacatcatctgattccatcatccaagccccagcactgagagtgagtgca
catccatcacactgcagaattcagcccgagggaccagaccagacggtaat
aaaaaaaactacatctatttctaacactgcctttcagagaagagtgacag
gagaaacgactaaacttccagacacaggactcttgtgccaaccatgtgtc
aatacaccaggcacaccactcctcagtcaaggactaggaggggccgctgg
ctggggaacaggcctaggccccaaggagctgatcttgctggcactcgtag
aaccagggcagttgtggagagctaggcatgccttccattcttgactgtgc
ttcagtgaggacttgagagccatgaagacagggcctggggcccttggtga
cactgaggtgtgccagggaggtggcaacagctgtgtgatatccagcaact
ctgtcacagcttggctgatcatgtctacctgcccttgtataaattagggg
agcagggctttctggaacacaaatgtgaccatgccacaacatgcatgaga
gtgagcttagctcctattctagctgtgctcatgtggcttggtatagtgcc
tggtccctgaaagacacttcatagagacacactgaagtaaaggccagctg
ccttctggatgcagagacataacaaagaggatggccaagtgaaagctttc
ttttactaccaccttctctttcattctggtttcttcacataggcaactct
gcctgaacattgtggtcaactgggaaaaggttttggtactaaaagcgagg
aagggccctgcttacttacaaacccctccctgcattcccttccatttttc
tctccctcaatcgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_137021504_137022567
seq2: B6Ng01-028K08.b_43_1087 (reverse)

seq1  ACTGACATGAAAGAATTTGCCAAGGGTCGACAGTCACTTGAGCTAATAAT  50
      ||||||  ||||||| |||||||||||||||||||||| ||| | |||||
seq2  ACTGACCAGAAAGAA-TTGCCAAGGGTCGACAGTCACTGGAG-TTATAAT  48

seq1  TCTCTGAAACTGAGGGGAATGGAGTAAAAGCTAAAACGCTGTCCAAAGTC  100
      |||| |||   |||||||   |||| |||||||||||| ||||| |||||
seq2  TCTC-GAA--CGAGGGGA--TGAGT-AAAGCTAAAACG-TGTCC-AAGTC  90

seq1  AGCACACTTCTCTTTTGGTTTATGTTTTTTGTTGTTTTGTTGTTTTTGTT  150
      ||||||| |||||||  | |||||  |||||||| |||||||  ||||| 
seq2  AGCACAC-TCTCTTT--GGTTATG--TTTTGTTG-TTTGTTG--TTTGTA  132

seq1  TCTGTGTTCTTCTGTGTAGCCCTAACTGTCCAGGAACTCTATAG-AATTC  199
      ||||||| ||   ||||||||||||||||||||||||||||||| |||||
seq2  TCTGTGTACT--CGTGTAGCCCTAACTGTCCAGGAACTCTATAGAAATTC  180

seq1  AGTGACCAGGCTGGCCTCAAACTCAGAGTTCACATGCCTCTGCCT-CCCA  248
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  AGTGACCAGGCTGGCCTCAAACTCAGAG-TCACATGCCTCTGCCTCCCCA  229

seq1  AATGCTGGAATCAAAGTCATGAGCCACCACAGCCCGACCCTAGCACATTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGAATCAAAGTCATGAGCCACCACAGCCCGACCCTAGCACATTT  279

seq1  CTTCAAGGCAAGTTTTTGTTCAGCTGGGTCTCTGAGGTTCAGGCCAAAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGGCAAGTTTTTGTTCAGCTGGGTCTCTGAGGTTCAGGCCAAAAG  329

seq1  AACGAGGTACTCCAACATCAGGAGTGGGAACAGGGGACAGATAGAATTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGGTACTCCAACATCAGGAGTGGGAACAGGGGACAGATAGAATTGC  379

seq1  CAAATTCTGCACATGCTATTATCCCCACCAAAAAGAAGCACCGGCATCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTGCACATGCTATTATCCCCACCAAAAAGAAGCACCGGCATCAA  429

seq1  GTTACGAGCAAAACCAGTAAAAGTCAGCTTGTCTCATTCACGATCAGTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACGAGCAAAACCAGTAAAAGTCAGCTTGTCTCATTCACGATCAGTGA  479

seq1  GCAAAACCAACCTTCTCCCTTGACACTGCAATAATCACTTTGAAAATTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACCAACCTTCTCCCTTGACACTGCAATAATCACTTTGAAAATTGA  529

seq1  GGAGGGGACCATAATAAGTACAAAAACTATAAAGAACCAGCAGTTAATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGACCATAATAAGTACAAAAACTATAAAGAACCAGCAGTTAATTT  579

seq1  ACTTTGGTCCCCAGTGGGGCAATGTGCAAGGAACCTTTAAGAGGCGGAGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGTCCCCAGTGGGGCAATGTGCAAGGAACCTTTAAGAGGCGGAGC  629

seq1  CTATGAGAAGTCATTAGGAGGAGCTGGGGTCCTTTTCCTGAGAGGGAATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGAAGTCATTAGGAGGAGCTGGGGTCCTTTTCCTGAGAGGGAATT  679

seq1  AAGTACTTCTCTGGGACCCTGGTTAATTAGTTCCAGAAGGAAAAGAAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTTCTCTGGGACCCTGGTTAATTAGTTCCAGAAGGAAAAGAAAAG  729

seq1  ACCAAAGCCAGACCTGCCCACTCTCCGGCATCCTATCTTACTGTGTCATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGCCAGACCTGCCCACTCTCCGGCATCCTATCTTACTGTGTCATC  779

seq1  TCTTCTCTCACACTAGCCTACCTTTATATCATCTATCAGGAGGTGACACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTCACACTAGCCTACCTTTATATCATCTATCAGGAGGTGACACA  829

seq1  ACCATAGAGGGAACTTGTCAGAACTGGCACCATGGTTGTTTGGACTTTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGAGGGAACTTGTCAGAACTGGCACCATGGTTGTTTGGACTTTCT  879

seq1  GTCTCTAAAACTGTAAGCTAAATAAAGCTTTACTCTTGAAAAAGTATCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTAAAACTGTAAGCTAAATAAAGCTTTACTCTTGAAAAAGTATCCA  929

seq1  GCTTCTGGTATTCCATGAATAATAACAGAAAATTGGGCTAATAAATACAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGTATTCCATGAATAATAACAGAAAATTGGGCTAATAAATACAC  979

seq1  TCATAAGGACTTAAACTACAACTAAGCAGTGTCCCAAACCAGCAGAAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGGACTTAAACTACAACTAAGCAGTGTCCCAAACCAGCAGAAAAA  1029

seq1  TGGTGGCTAGGAATTC  1064
      ||||||||||||||||
seq2  TGGTGGCTAGGAATTC  1045

seq1: chr5_136921522_136922642
seq2: B6Ng01-028K08.g_66_1177

seq1  GAATTCCAGCCTAAGTTTTTGTTGGTGGGACAGGGTCTCATGTATCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCTAAGTTTTTGTTGGTGGGACAGGGTCTCATGTATCCCAG  50

seq1  ACTGGTCTGGAACTCTCTATGTAGCAGAGGATGACTTTGAACTTCTGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCTGGAACTCTCTATGTAGCAGAGGATGACTTTGAACTTCTGATC  100

seq1  CTCCTGCCTCTACCTCCAGAATGGTGAGATGACAAGCATGTCACACCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCCTCTACCTCCAGAATGGTGAGATGACAAGCATGTCACACCCTA  150

seq1  TTTATTCAGTGGTGGGGATAGTGTTTAGGGCCTCATGCAAGCTATACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAGTGGTGGGGATAGTGTTTAGGGCCTCATGCAAGCTATACAAG  200

seq1  CACTCCAGACCTCAGGTAGGTTTCAGAGTATTCCTACTGCCTTGGTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGACCTCAGGTAGGTTTCAGAGTATTCCTACTGCCTTGGTCTTT  250

seq1  TGACATCATCTGATTCCATCATCCAAGCCCCAGCACTGAGAGTGAGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCATCTGATTCCATCATCCAAGCCCCAGCACTGAGAGTGAGTGCA  300

seq1  CATCCATCACACTGCAGAATTCAGCCCGAGGGACCAGACCAGACGGTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCACACTGCAGAATTCAGCCCGAGGGACCAGACCAGACGGTAAT  350

seq1  AAAAAAAACTACATCTATTTCTAACACTGCCTTTCAGAGAAGAGTGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACTACATCTATTTCTAACACTGCCTTTCAGAGAAGAGTGACAG  400

seq1  GAGAAACGACTAAACTTCCAGACACAGGACTCTTGTGCCAACCATGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACGACTAAACTTCCAGACACAGGACTCTTGTGCCAACCATGTGTC  450

seq1  AATACACCAGGCACACCACTCCTCAGTCAAGGACTAGGAGGGGCCGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACCAGGCACACCACTCCTCAGTCAAGGACTAGGAGGGGCCGCTGG  500

seq1  CTGGGGAACAGGCCTAGGCCCCAAGGAGCTGATCTTGCTGGCACTCGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAACAGGCCTAGGCCCCAAGGAGCTGATCTTGCTGGCACTCGTAG  550

seq1  AACCAGGGCAGTTGTGGAGAGCTAGGCATGCCTTCCATTCTTGACTGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGGCAGTTGTGGAGAGCTAGGCATGCCTTCCATTCTTGACTGTGC  600

seq1  TTCAGTGAGGACTTGAGAGCCATGAAGACAGGGCCTGGGGCCCTTGGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGAGGACTTGAGAGCCATGAAGACAGGGCCTGGGGCCCTTGGTGA  650

seq1  CACTGAGGTGTGCCAGGGAGGTGGCAACAGCTGTGTGATATCCAGCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGGTGTGCCAGGGAGGTGGCAACAGCTGTGTGATATCCAGCAACT  700

seq1  CTGTCACAGCTTGGCTGATCATGTCTACCTGCCCTTGTATAAATTAGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACAGCTTGGCTGATCATGTCTACCTGCCCTTGTATAAATTAGGGG  750

seq1  AGCAGGGCTTTCTGGAACACAAATGTGACCATGCCACAACATGCATGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGCTTTCTGGAACACAAATGTGACCATGCCACAACATGCATGAGA  800

seq1  GTGAGCTTAGCTCCTATTCTAGCTGTGCTCATGTTGCTTGGTATAGTGCC  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTGAGCTTAGCTCCTATTCTAGCTGTGCTCATGTGGCTTGGTATAGTGCC  850

seq1  TGGTCCCTG-AAGACAC-TCATAGAGACACACTGAAGTAAAGGCCAGCTG  898
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  TGGTCCCTGAAAGACACTTCATAGAGACACACTGAAGTAAAGGCCAGCTG  900

seq1  CCTCCTGGATGCAGAGACATAACAAAGAGGATGGCCAAGTGATAGCTCTT  948
      ||| |||||||||||||||||||||||||||||||||||||| |||| ||
seq2  CCTTCTGGATGCAGAGACATAACAAAGAGGATGGCCAAGTGAAAGCT-TT  949

seq1  CTTTTTACTACCA-CTTCTCTTTCATTCTGGTTTCTTCCACAGTAGGCCA  997
      | ||||||||||| ||||||||||||||||||||||| |||| |||| ||
seq2  C-TTTTACTACCACCTTCTCTTTCATTCTGGTTTCTT-CACA-TAGG-CA  995

seq1  ACTCTGCCTG-ACAGTGTGGCCAACTGGGCAGAGGTCTTGGTACATACAA  1046
      |||||||||| ||| ||||| |||||||| | |||| ||||||| || ||
seq2  ACTCTGCCTGAACATTGTGGTCAACTGGGAAAAGGTTTTGGTAC-TAAAA  1044

seq1  GGGAGGGAAGGGCCCTGCTCACTTACAAAACCCTTCCTCTGCATTCCCTT  1096
      | || |||||||||||||| ||||||||| ||||  | ||||||||||||
seq2  GCGA-GGAAGGGCCCTGCTTACTTACAAACCCCT--CCCTGCATTCCCTT  1091

seq1  TCATATTTTCTCTCTTCCTTCAATC  1121
       ||| |||||||   ||| ||||||
seq2  CCAT-TTTTCTC---TCCCTCAATC  1112