BAC Information

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BAC

Clone NameB6Ng01-028M06
Chromosome5 (Build37)
Map Location 21,597,315 - 21,750,314
singlet/doubletdoublet
Overlap geneReln
Upstream geneEG626903, A530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Dnaja1-ps
Downstream geneLOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, Lhfpl3, EG625219, LOC100042101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028M06.bB6Ng01-028M06.g
ACCDH859157DH859158
length1,114841
definitionDH859157|Mus musculus domesticus DNA, BAC clone: B6Ng01-028M06, 5' end.DH859158|Mus musculus domesticus DNA, BAC clone: B6Ng01-028M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,597,315 - 21,598,436)(21,749,472 - 21,750,314)
sequence
gaattcctaagttacctgagacaataacatactgagcacccttccttcta
agaagttggtcatatacaggcttgtgtatatgagtcctgggtagggaacc
aggctagtgttgtgtccttatttgacgatcttgaaattgattacaagggg
agtttgagccactgaaaagcaatgttttgaagtcaacctgggttcctaga
aactctccaaactaagaactgaagcctagatgactccatgggagacaatt
cctgagcttattatgtgtttctttctacatctctgcagagaatcctgggt
ctgcttgcttaagggctgtgtgaacttctccctccaacctgactcaatta
atgaaggatcaaggaagtcaaggctggaagaacatactagtgggaaccat
aaacaaccaaggtgataaagaaagaaagctccagtctgtacgcatcctca
tgggttctggaggttggggttggaaggcacacttcctctacctgacggcc
aagggctgacacaagccactgtgtctctgaagacctcagctttgcacaat
gaataaagaatggagtcaataatacctgctctcttgatagtttgtgagaa
gttcagtgattcaaagcagttcttttaaaatttccaaatatcaataatat
ctctgaacatgtgctcttaaaagacatgcactaatgtatttcagtcttag
cagtaactggtagggaaatagaataaatacagtttttgtttctcactata
atggttattaaaattcctcagattgaattaaaacctttagaaaattgtac
aagaataggccttacaataaaatataataaaaaaaatactgcaaaccttc
acacattattatagcagataaaatcatcaattagtttaaaagccctccac
attttggacattaccaaatattctcctaacagatataaactcaaggatag
gggatgacaaatgtcatttttcttaacagaagacttgcattaaatgaccc
aaatccagtatgctaaaactcaagtgcagcatttactgaaactatgaaga
gtttccaaaaatgttcccaatttaataccagctgtttttgtcacagcaat
cagtctactcactt
gaattcagttcactgcatgttctgtaatattcgtaggaagttggccagta
atatagatcagaagtagagtacaggccctgtccttgtaacatgacatgag
atatttattcacagcactacatcatatggcccatgtttgcttggcattat
ctattgttggatctttgagcagttctagtttgttgtctttttttctgtaa
gtaaatggtatttataaagcagctagtaaatttatcaaaacaggctgttg
aactgcagcctccacttctggtccagtgaatattaggtgtaaccatctct
gtctctagtggcagacactgagagcagagcttgaagatccagatttctaa
tggggaaaaaagccctgctctgcagtgtgtgccagtttctgtggtgtgag
tcttcctattacggtcaaattgctgctgccaatgcgatgccactaattca
gacttggagagagatgtgtgcttggccctcaggactggcctgccctacag
cccggggggggggggctgattcataaagttgttacgaagatttatttggg
ggtggggggcaaagtataggtcacggaataaactgcaaaactggttgtct
ttactgattttattttctctgtgtctcccccctcacctaagagttcctta
tgttctccattatgcctttgccagcatctaaagcacttagaactcagtgc
aatcagaggacccataaaaacagtgtgactctcttcactgccttactcca
cataataactggctggctacaccgtgtaataaataaaactaaatactttg
agtcctaggagcatagtgtagaagtattatgcctctgcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_21597315_21598436
seq2: B6Ng01-028M06.b_43_1156

seq1  GAATTCCTAAGTTACCTGAGACAATAACATACTGAGCACCCTTCCTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGTTACCTGAGACAATAACATACTGAGCACCCTTCCTTCTA  50

seq1  AGAAGTTGGTCATATACAGGCTTGTGTATATGAGTCCTGGGTAGGGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGGTCATATACAGGCTTGTGTATATGAGTCCTGGGTAGGGAACC  100

seq1  AGGCTAGTGTTGTGTCCTTATTTGACGATCTTGAAATTGATTACAAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGTGTTGTGTCCTTATTTGACGATCTTGAAATTGATTACAAGGGG  150

seq1  AGTTTGAGCCACTGAAAAGCAATGTTTTGAAGTCAACCTGGGTTCCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGCCACTGAAAAGCAATGTTTTGAAGTCAACCTGGGTTCCTAGA  200

seq1  AACTCTCCAAACTAAGAACTGAAGCCTAGATGACTCCATGGGAGACAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCCAAACTAAGAACTGAAGCCTAGATGACTCCATGGGAGACAATT  250

seq1  CCTGAGCTTATTATGTGTTTCTTTCTACATCTCTGCAGAGAATCCTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTTATTATGTGTTTCTTTCTACATCTCTGCAGAGAATCCTGGGT  300

seq1  CTGCTTGCTTAAGGGCTGTGTGAACTTCTCCCTCCAACCTGACTCAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCTTAAGGGCTGTGTGAACTTCTCCCTCCAACCTGACTCAATTA  350

seq1  ATGAAGGATCAAGGAAGTCAAGGCTGGAAGAACATACTAGTGGGAACCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGATCAAGGAAGTCAAGGCTGGAAGAACATACTAGTGGGAACCAT  400

seq1  AAACAACCAAGGTGATAAAGAAAGAAAGCTCCAGTCTGTACGCATCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCAAGGTGATAAAGAAAGAAAGCTCCAGTCTGTACGCATCCTCA  450

seq1  TGGGTTCTGGAGGTTGGGGTTGGAAGGCACACTTCCTCTACCTGACGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTGGAGGTTGGGGTTGGAAGGCACACTTCCTCTACCTGACGGCC  500

seq1  AAGGGCTGACACAAGCCACTGTGTCTCTGAAGACCTCAGCTTTGCACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTGACACAAGCCACTGTGTCTCTGAAGACCTCAGCTTTGCACAAT  550

seq1  GAATAAAGAATGGAGTCAATAATACCTGCTCTCTTGATAGTTTGTGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGAATGGAGTCAATAATACCTGCTCTCTTGATAGTTTGTGAGAA  600

seq1  GTTCAGTGATTCAAAGCAGTTCTTTTAAAATTTCCAAATATCAATAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTGATTCAAAGCAGTTCTTTTAAAATTTCCAAATATCAATAATAT  650

seq1  CTCTGAACATGTGCTCTTAAAAGACATGCACTAATGTATTTCAGTCTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAACATGTGCTCTTAAAAGACATGCACTAATGTATTTCAGTCTTAG  700

seq1  CAGTAACTGGTAGGGAAATAGAATAAATACAGTTTTTGTTTCTCACTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACTGGTAGGGAAATAGAATAAATACAGTTTTTGTTTCTCACTATA  750

seq1  ATGGTTATTAAAATTCCTCAGATTGAATTAAAACCTTTAGAAAATTGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTATTAAAATTCCTCAGATTGAATTAAAACCTTTAGAAAATTGTAC  800

seq1  AAGAATAGGCCTTACAATAAAATATAATAAAAAAAATACTGCAAACCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAGGCCTTACAATAAAATATAATAAAAAAAATACTGCAAACCTTC  850

seq1  ACACATTATTATAGCAGATAAAATCATCAATTAGTTTAAAAGCCCTCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTATTATAGCAGATAAAATCATCAATTAGTTTAAAAGCCCTCCAC  900

seq1  ATTTTGGACAATTACCAAATATTCTCCTAACAGATATAAACTCAAGGATA  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGAC-ATTACCAAATATTCTCCTAACAGATATAAACTCAAGGATA  949

seq1  GGGGATGACAAATGTCATTTTTCTTAACAGAAGAACTTGCATTAAATGAC  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||  
seq2  GGGGATGACAAATGTCATTTTTCTTAACAGAAG-ACTTGCATTAAATG--  996

seq1  ACCAAAATCCAGTATGCTAAAAACTCAAGTGCAGCATTTACTGAAACTAT  1050
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACCCAAATCCAGTATGCT-AAAACTCAAGTGCAGCATTTACTGAAACTAT  1045

seq1  GAAGAGTTTCAGAAAATTGTTCTCAATTTTAATACCCAGCTGTTTTTGTT  1100
      ||||||||||  |||| ||||| ||| ||||||| |||||||||||||| 
seq2  GAAGAGTTTC-CAAAAATGTTCCCAA-TTTAATA-CCAGCTGTTTTTGT-  1091

seq1  CAACAGCAATTCA---AACTCACTT  1122
        ||||||| |||    ||||||||
seq2  -CACAGCAA-TCAGTCTACTCACTT  1114

seq1: chr5_21749472_21750314
seq2: B6Ng01-028M06.g_68_908 (reverse)

seq1  AAAGCAGAGGCATCAATACTTCTACACTGTGCTCCCTAGGGACTCAAGGT  50
      ||||||||||||| |||||||||||||| |||| |||| |||||||| ||
seq2  AAAGCAGAGGCAT-AATACTTCTACACTATGCT-CCTA-GGACTCAAAGT  47

seq1  ATTTAAGTTTTATTTAATTACACGGTGTAGCCAGCCAGTTATTATGTGGA  100
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTT-AGTTTTATTT-ATTACACGGTGTAGCCAGCCAGTTATTATGTGGA  95

seq1  GTAAGGCAGTGAAGAGAGTCACACTG-TTTTATGGGTCCTCTGATAGCAC  149
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  GTAAGGCAGTGAAGAGAGTCACACTGTTTTTATGGGTCCTCTGATTGCAC  145

seq1  TGAGTTCTAAGTGC-TTAGATGCTGGCAAAGGCATAATGGAGAACATAAG  198
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTAAGTGCTTTAGATGCTGGCAAAGGCATAATGGAGAACATAAG  195

seq1  GAACTCTTAGGTGAGGGGGGAGACACAGAG-AAATAAAATCAGTAAAGAC  247
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAACTCTTAGGTGAGGGGGGAGACACAGAGAAAATAAAATCAGTAAAGAC  245

seq1  AACCAGTTTTGCAGTTTATTCCGTGACCTATACTTTGCCCCCCACCCCCA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTTTTGCAGTTTATTCCGTGACCTATACTTTGCCCCCCACCCCCA  295

seq1  AATAAATCTTCGTAACAACTTTATGAATCAGCCCCCCCCCCCCGGGCTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCTTCGTAACAACTTTATGAATCAGCCCCCCCCCCCCGGGCTGT  345

seq1  AGGGCAGGCCAGTCCTGAGGGCCAAGCACACATCTCTCTCCAAGTCTGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGCCAGTCCTGAGGGCCAAGCACACATCTCTCTCCAAGTCTGAA  395

seq1  TTAGTGGCATCGCATTGGCAGCAGCAATTTGACCGTAATAGGAAGACTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGCATCGCATTGGCAGCAGCAATTTGACCGTAATAGGAAGACTCA  445

seq1  CACCACAGAAACTGGCACACACTGCAGAGCAGGGCTTTTTTCCCCATTAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAGAAACTGGCACACACTGCAGAGCAGGGCTTTTTTCCCCATTAG  495

seq1  AAATCTGGATCTTCAAGCTCTGCTCTCAGTGTCTGCCACTAGAGACAGAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGGATCTTCAAGCTCTGCTCTCAGTGTCTGCCACTAGAGACAGAG  545

seq1  ATGGTTACACCTAATATTCACTGGACCAGAAGTGGAGGCTGCAGTTCAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTACACCTAATATTCACTGGACCAGAAGTGGAGGCTGCAGTTCAAC  595

seq1  AGCCTGTTTTGATAAATTTACTAGCTGCTTTATAAATACCATTTACTTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTTTTGATAAATTTACTAGCTGCTTTATAAATACCATTTACTTAC  645

seq1  AGAAAAAAAGACAACAAACTAGAACTGCTCAAAGATCCAACAATAGATAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAGACAACAAACTAGAACTGCTCAAAGATCCAACAATAGATAA  695

seq1  TGCCAAGCAAACATGGGCCATATGATGTAGTGCTGTGAATAAATATCTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGCAAACATGGGCCATATGATGTAGTGCTGTGAATAAATATCTCA  745

seq1  TGTCATGTTACAAGGACAGGGCCTGTACTCTACTTCTGATCTATATTACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGTTACAAGGACAGGGCCTGTACTCTACTTCTGATCTATATTACT  795

seq1  GGCCAACTTCCTACGAATATTACAGAACATGCAGTGAACTGAATTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACTTCCTACGAATATTACAGAACATGCAGTGAACTGAATTC  841