BAC Information

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BAC

Clone NameB6Ng01-028M16
Chromosome5 (Build37)
Map Location 51,577,751 - 51,724,077
singlet/doubletdoublet
Overlap genenone
Upstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
Downstream genePpargc1a, Dhx15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028M16.bB6Ng01-028M16.g
ACCDH859177DH859178
length1,006994
definitionDH859177|Mus musculus domesticus DNA, BAC clone: B6Ng01-028M16, 5' end.DH859178|Mus musculus domesticus DNA, BAC clone: B6Ng01-028M16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,723,551 - 51,724,077)(51,577,751 - 51,578,798)
sequence
gaattcctaagtgggagaaatgggactttaattcaaccagaaaatcttta
gatatgataatcagtttcagcaaagtaacagtatacaaaatcaacatata
aaatcagtggattttatatataccaataatgaacttgccaaaaatgaaat
tagggtgaaattacatccaccgtttgctttagaaatattaaactacctag
gaattagcctaacttagaactgaactacctttaaaatgaaaatataaagg
catagaaaaaaatggaagaaagccctagaaaataggaaaaaaaaaaaacc
ttccatgctcatggattggttgaaataatattgtgttaaatgactttatt
gtcaaaagcaggatccgggataacataaccaagatcctaataacattctt
cacagaactgtaaaagacaattctaaaatgtacataaacaaagagaccct
ggacagccaaagcagtgctaagaaagaacaatgctggaggcatcacaata
tctgatcttaaattgtgctacaagaccacagggacaaagacaacatgcca
ctggccctaaagcagacagctaagccaatagaacagaatagatgacccag
atataaatccacagagctgcagccacttaattattgacaaaagtgcataa
aaaacatacataggttaaaataaacaatctctttgacaaatgatgctggg
caaactagatattcaaaaattatctctaaagctgtcatcctgcagaaagg
cccattcaaaataaccaaagatcttaatagaaaacttgaaatatcaaaac
tcttggaaaatcatagggaaacacttcaaaatgcaagaatgggcaaaaga
tatctgaaaaagattctaataacacacacactcacacacacatgtgcaca
catacatacacaccacatacacacacatatatatatactcaaaacacata
cacatacacatacacagagtcacatatacacttatacacacaatcacata
cacact
gaattcaaggccagcctggtctacagagtgagttctaggacagccagagc
tacacagagaaaccctgtctcaaaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagagaga
gagagagagaaagaaagaaaaagaaaagtaagtgagagagaaagaaagaa
agaaagaaagaaagaaagaaagagagaaagagagaaagaaagaaaaagaa
aagtaagtgagagagagagagagagaaagaaagaaagaaagaaagaaaga
aagaaagaaaggaagaaaggaagaaagaaaggaaggaataggtccataca
ggtataggattaaagatggtatagtgattacgacatagatatacagataa
gctatatataaaaatagacaaatatttctaaaatatacatagaaaatagt
atatgaatacacaaacatacatacacacacacacacacacacacacacac
acacacacatatatatatatatagatatatgatgatggtaagtagaatgt
agattaacagagtagatactcagacaagacacagtatattgaatgaagca
caacatctgctaatgcattggtaagagcctagatgatatcagccactgga
tgttagcagagttgagttatggaatctgagcgttgttccgttaaggagaa
ggtggctcagaacaaccatgaactctgaactacatgtaagtgaatgactc
atctctacggacacctgctaatacttcttcatatcatcctcacatgagca
ttctggttgttcctccgttatctgcattcttacactcactatcctattcg
gacatcatatcattggaacaaagaagcttgtattatctaggtggctgcaa
gtacagatgatgcgcagccaatatctacttcttcactctagatcatcttc
aggtaacagcatacatatttcagctgctatgaatagacgcataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_51723551_51724077
seq2: B6Ng01-028M16.b_44_570 (reverse)

seq1  GGTCTTGTAGCACAATTTAAGATCAGATATTGTGATGCCTCCAGCATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGTAGCACAATTTAAGATCAGATATTGTGATGCCTCCAGCATTGT  50

seq1  TCTTTCTTAGCACTGCTTTGGCTGTCCAGGGTCTCTTTGTTTATGTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTAGCACTGCTTTGGCTGTCCAGGGTCTCTTTGTTTATGTACAT  100

seq1  TTTAGAATTGTCTTTTACAGTTCTGTGAAGAATGTTATTAGGATCTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATTGTCTTTTACAGTTCTGTGAAGAATGTTATTAGGATCTTGGT  150

seq1  TATGTTATCCCGGATCCTGCTTTTGACAATAAAGTCATTTAACACAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATCCCGGATCCTGCTTTTGACAATAAAGTCATTTAACACAATAT  200

seq1  TATTTCAACCAATCCATGAGCATGGAAGGTTTTTTTTTTTTCCTATTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAACCAATCCATGAGCATGGAAGGTTTTTTTTTTTTCCTATTTTC  250

seq1  TAGGGCTTTCTTCCATTTTTTTCTATGCCTTTATATTTTCATTTTAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTTTCTTCCATTTTTTTCTATGCCTTTATATTTTCATTTTAAAGG  300

seq1  TAGTTCAGTTCTAAGTTAGGCTAATTCCTAGGTAGTTTAATATTTCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCAGTTCTAAGTTAGGCTAATTCCTAGGTAGTTTAATATTTCTAAA  350

seq1  GCAAACGGTGGATGTAATTTCACCCTAATTTCATTTTTGGCAAGTTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACGGTGGATGTAATTTCACCCTAATTTCATTTTTGGCAAGTTCATT  400

seq1  ATTGGTATATATAAAATCCACTGATTTTATATGTTGATTTTATATACTGT  450
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTGGTATATATAAAATCCACTGATTTTATATGTTGATTTTGTATACTGT  450

seq1  TACTTTGCTGAAACTGATTATCATATCTAAAGATTTTCTGGTTGAATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGCTGAAACTGATTATCATATCTAAAGATTTTCTGGTTGAATTAA  500

seq1  AGTCCCATTTCTCCCACTTAGGAATTC  527
      |||||||||||||||||||||||||||
seq2  AGTCCCATTTCTCCCACTTAGGAATTC  527

seq1: chr5_51577751_51578798
seq2: B6Ng01-028M16.g_66_1059

seq1  GAATTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGAGC  50

seq1  TACACAGAGAAACCCTGTCTCAA----AAAGAAAGAAAGAAAGAAAGAAA  96
      |||||||||||||||||||||||    |||||||||||||||||||||||
seq2  TACACAGAGAAACCCTGTCTCAAAAAGAAAGAAAGAAAGAAAGAAAGAAA  100

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGA  150

seq1  GAGAGAGAGAAAGAAAGAAAAAGAAAAGTAAGTGAGAGAGAAAGAAAGAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAAAGAAAGAAAAAGAAAAGTAAGTGAGAGAGAAAGAAAGAA  200

seq1  AGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAGAGAAAGAAAGAAAAAGAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAGAGAAAGAAAGAAAAAGAA  250

seq1  AAGTAAGTGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGTGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGA  300

seq1  AAGAAAGAAAGGAAGAAAGGAAGAAAGAAAGGAAGGAATAGGTCCATACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGGAAGAAAGGAAGAAAGAAAGGAAGGAATAGGTCCATACA  350

seq1  GGTATAGGATTAAAGATGGTATAGTGATTACGACATAGATATACAGATAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGGATTAAAGATGGTATAGTGATTACGACATAGATATACAGATAA  400

seq1  GCTATATATAAAAATAGACAAATATTTCTAAAATATACATAGAAAATAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATATAAAAATAGACAAATATTTCTAAAATATACATAGAAAATAGT  450

seq1  ATATGAATACACAAACATACATACACACACACACACACACACACACACAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATACACAAACATACATACACACACACACACACACACACACACAC  500

seq1  ACACACACATATATATATATATAGATATATGATGATGGTAAGGTAGAAAT  546
      ||||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  ACACACACATATATATATATATAGATATATGATGATGGTAA-GTAG-AAT  548

seq1  GTAGATTTAAACAGAAGTAGATACTCAGACAAAGACACAGGTATATTTGA  596
      |||||||  ||||| ||||||||||||||| |||||||| ||||| ||||
seq2  GTAGATT--AACAG-AGTAGATACTCAGAC-AAGACACA-GTATA-TTGA  592

seq1  AATGGAAGCACAACAACCTGCTAATGCATTTGGTAAGAGCCTAAGGATGA  646
      |   |||||||||| | ||||||||||| ||||||||||||||  |||||
seq2  A--TGAAGCACAAC-ATCTGCTAATGCA-TTGGTAAGAGCCTA--GATGA  636

seq1  TATCAGCCACTGGATGTTAGCAGAGTTGAGTTTATGGGAAATCTGAGCGT  696
      |||||||||||||||||||||||||||||| ||||||  |||||||||||
seq2  TATCAGCCACTGGATGTTAGCAGAGTTGAG-TTATGG--AATCTGAGCGT  683

seq1  TGTTCCGTTAAAGGAGAAGGTGGGCTCAGAAACAACCATGAACTCTGAAC  746
      ||||||||| ||||||||||| ||||||| ||||||||||||||||||||
seq2  TGTTCCGTT-AAGGAGAAGGT-GGCTCAG-AACAACCATGAACTCTGAAC  730

seq1  TACATGTAAGTGAATGACTCATCTCTACGGACACCTGCTAATACTTCTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTAAGTGAATGACTCATCTCTACGGACACCTGCTAATACTTCTTC  780

seq1  ATATCACCCCTCACATGAGCATCCCCGGTTGTTCCTCCCTTTTATCTTGG  846
      ||||||  ||||||||||||||  | ||||||||||||   ||||||  |
seq2  ATATCA-TCCTCACATGAGCAT-TCTGGTTGTTCCTCC--GTTATCT--G  824

seq1  CATTCCTTACTTCTTCACTATCCTATTGGGAGGACATTCATAATCATTGG  896
      |||| |||||    |||||||||||||    ||||| |||| ||||||||
seq2  CATT-CTTAC--ACTCACTATCCTATT---CGGACA-TCAT-ATCATTGG  866

seq1  AACAAGAAAGGCCTGTAATTCACCCAGGTGGCTGCCAAGTACAAGATGTA  946
      ||||| | | || ||||  | | | ||||||||| ||||||| ||||| |
seq2  AACAA-AGAAGCTTGTA--TTATCTAGGTGGCTG-CAAGTAC-AGATG-A  910

seq1  TGCTGCAGGCAAATTATCTCACTTCTTCAATCTTCTGTTATTCACCTTCA  996
      ||| |||| |||  ||||| |||||||||     || |   ||| |||||
seq2  TGC-GCAGCCAA--TATCT-ACTTCTTCA-----CTCTAGATCATCTTCA  951

seq1  AGTAAACAGCATAGCATATCTTCAAGGGCTGCTATGAAAATTAGACGCAT  1046
       || ||||||||| ||||| ||||   |||||||||||   |||||||||
seq2  GGT-AACAGCATA-CATAT-TTCA---GCTGCTATGAA---TAGACGCAT  992

seq1  AA  1048
      ||
seq2  AA  994