BAC Information

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BAC

Clone NameB6Ng01-028O18
Chromosome5 (Build37)
Map Location 121,766,371 - 121,889,966
singlet/doubletdoublet
Overlap geneAU042671, Trafd1, C330023M02Rik
Upstream geneLOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802
Downstream geneErp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028O18.bB6Ng01-028O18.g
ACCDH859265DH859266
length1,1061,054
definitionDH859265|Mus musculus domesticus DNA, BAC clone: B6Ng01-028O18, 5' end.DH859266|Mus musculus domesticus DNA, BAC clone: B6Ng01-028O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,888,851 - 121,889,966)(121,766,371 - 121,767,442)
sequence
gaattccttaaatttttagtttctttgtagtctcaagtctttttctcagc
agctcccctgtctccagaagtgagtgcaggtaactgctctggactttccc
ctgcacagtctttgaaaattttctttcttcctacaaaataaacaacaagt
agtcttgctcaaaactcagtcgctcagtttatagagacctcaggcagaac
accaatggcattttcagttcataaagattatggaaggggaaagccatttc
tggcatcaggtgactcatgtaaggcacacatggcacaggctgtgatcaac
aggtgtgcaccccagaccaagaaaaatgtgagagtcttcctgagtagctt
agacacagagctatttcatgacaagctgggtataagtgaaatctgtgatg
aactgggcatgaactgatcctcaggagaaagtttcaacctgtgcacaatc
ctcgctgcttgcacatcatctcttaccgtagagatagaagtttcctctaa
cgtgagctcctcaagtctaagtgcaatcagatgtgcttcaagtcctttaa
tatgatccacagcattggaaattacagtctgaagtccagtaacgtagtct
tggaaactggtgaagattggaggctgggggaagaagatgaaaaagccgtt
aaaagcttcccaaacagcccgtttttctagcttggtgtgataacttccca
gcatgcatgtctgatgctgtgagcacagggatgaatggacccactttgga
gaaacccattagctgctaacttagctcctgggacgcactgcactgtcctt
tcagtggacctagggaaggatcttcatggtactttaaggatggacctggg
aagcggcgggcggcagggacaatgtaagttgagagacagctgccttacat
agtgagactgtcttaaaaccagcacatacttgtgtcccagctactgggga
ggccgaggaccaagagtcagacaagctcaggcaacacagcacagccctta
caggaaaggctgcagcaacatgcctcagaagacctgacagcctctaagaa
tgtgcaggaaacgcggaggcgaggcatcggctgggcagcgtcgctgctct
tgtcat
gaattcttacaagcagacatcatggggctggagacatagcttagtgctta
agagcactgctgttcttccaaagaaccagggttcaggtcctaggacctac
atggcagctcacagctgtctataactccaattccaggggtctaagaccct
cgcacatacatgcatgcaggcaaaacaccaatgcacattaaaataaatca
aaatcatttaagaaaacagcagaagccgggcagtggtggcgcatgccttt
aaccctgtcttgaaaaaaaagcaaagcaaagcaaagcaaagcaacagact
ttgttttaggtccttaaatgtctataattataaaaaaagttattttttta
aagggagattttattttattttattttatctcattttaattgggtctttc
tgtgtagccctggctggcctggaattcattatgtagaccaggctggcctc
aaactcagaaatctgcctgcctctgcttcccaagtcttgggattaaaggc
gtgtgccaccactgtccagccaaaaaagggatattttttaaaagatggat
tttaaaagctacttttagatccagcaagatggctcagcaataaaactcat
tgccactaagcccggtgacctgagtttcatctccagaaccttcttggtag
aaggggagaaccgactcccataagctgtactcagatgtctgcatccacgt
tgcagtgcatgcagacatgcacacactaaagccaggtttagcgctataca
gggcctgcacatgacttggttacttggtgacacaggccccttgtcacatt
cccctgcagtggctcaccttctctgccttcctttttgcagtagctcagaa
ggacggccctttcgactcggcactggtgccaacatggaaaagttgtgaag
atggatcgagacatgaccaagtaccacacggcggaaaatgacacacacac
ctttgccacactttggactccagagatcagggggtttgttttgtttttat
tttaagaaatgctttaaaaatgattcagttggattgtagcatgactgtag
tccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_121888851_121889966
seq2: B6Ng01-028O18.b_45_1150 (reverse)

seq1  ATGACAAAGAGCAGCCGACCGCCTGGCCCAGCCCGATTGCCTCGCCTTCC  50
      ||||| |||||||| ||| |||   |||||| |||| ||||||||| |||
seq2  ATGAC-AAGAGCAG-CGA-CGC--TGCCCAG-CCGA-TGCCTCGCC-TCC  42

seq1  GCTGTTTCCCTGCACATTCTTAGA-GCTGTCAGGTC-TCTGAGGCATGTT  98
      || |||| |||||||||||||||| ||||||||||| ||||||||||| |
seq2  GC-GTTT-CCTGCACATTCTTAGAGGCTGTCAGGTCTTCTGAGGCATG-T  89

seq1  TGCTGCAGCCTTTCCTGTAAGGGCTGTGCTGTGTTGCCTGGGCTTGTCCT  148
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  TGCTGCAGCCTTTCCTGTAAGGGCTGTGCTGTGTTGCCTGAGCTTGT-CT  138

seq1  GACTCTTGGTCCTCGGCCTCCCCAGTAGCTGGGACACAAGTATGTGCTGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTGGTCCTCGGCCTCCCCAGTAGCTGGGACACAAGTATGTGCTGG  188

seq1  TTTTAAGACAGTCTCACTATGTAAGGCAGCTGTCTCTCAACTTACATTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGACAGTCTCACTATGTAAGGCAGCTGTCTCTCAACTTACATTGT  238

seq1  CCCTGCCGCCCGCCGCTTCCCAGGTCCATCCTTAAAGTACCATGAAGATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCGCCCGCCGCTTCCCAGGTCCATCCTTAAAGTACCATGAAGATC  288

seq1  CTTCCCTAGGTCCACTGAAAGGACAGTGCAGTGCGTCCCAGGAGCTAAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTAGGTCCACTGAAAGGACAGTGCAGTGCGTCCCAGGAGCTAAGT  338

seq1  TAGCAGCTAATGGGTTTCTCCAAAGTGGGTCCATTCATCCCTGTGCTCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCTAATGGGTTTCTCCAAAGTGGGTCCATTCATCCCTGTGCTCAC  388

seq1  AGCATCAGACATGCATGCTGGGAAGTTATCACACCAAGCTAGAAAAACGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGACATGCATGCTGGGAAGTTATCACACCAAGCTAGAAAAACGG  438

seq1  GCTGTTTGGGAAGCTTTTAACGGCTTTTTCATCTTCTTCCCCCAGCCTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTGGGAAGCTTTTAACGGCTTTTTCATCTTCTTCCCCCAGCCTCC  488

seq1  AATCTTCACCAGTTTCCAAGACTACGTTACTGGACTTCAGACTGTAATTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCACCAGTTTCCAAGACTACGTTACTGGACTTCAGACTGTAATTT  538

seq1  CCAATGCTGTGGATCATATTAAAGGACTTGAAGCACATCTGATTGCACTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCTGTGGATCATATTAAAGGACTTGAAGCACATCTGATTGCACTT  588

seq1  AGACTTGAGGAGCTCACGTTAGAGGAAACTTCTATCTCTACGGTAAGAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGAGGAGCTCACGTTAGAGGAAACTTCTATCTCTACGGTAAGAGA  638

seq1  TGATGTGCAAGCAGCGAGGATTGTGCACAGGTTGAAACTTTCTCCTGAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGCAAGCAGCGAGGATTGTGCACAGGTTGAAACTTTCTCCTGAGG  688

seq1  ATCAGTTCATGCCCAGTTCATCACAGATTTCACTTATACCCAGCTTGTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTCATGCCCAGTTCATCACAGATTTCACTTATACCCAGCTTGTCA  738

seq1  TGAAATAGCTCTGTGTCTAAGCTACTCAGGAAGACTCTCACATTTTTCTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAGCTCTGTGTCTAAGCTACTCAGGAAGACTCTCACATTTTTCTT  788

seq1  GGTCTGGGGTGCACACCTGTTGATCACAGCCTGTGCCATGTGTGCCTTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGGGTGCACACCTGTTGATCACAGCCTGTGCCATGTGTGCCTTAC  838

seq1  ATGAGTCACCTGATGCCAGAAATGGCTTTCCCCTTCCATAATCTTTATGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCACCTGATGCCAGAAATGGCTTTCCCCTTCCATAATCTTTATGA  888

seq1  ACTGAAAATGCCATTGGTGTTCTGCCTGAGGTCTCTATAAACTGAGCGAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAATGCCATTGGTGTTCTGCCTGAGGTCTCTATAAACTGAGCGAC  938

seq1  TGAGTTTTGAGCAAGACTACTTGTTGTTTATTTTGTAGGAAGAAAGAAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTTGAGCAAGACTACTTGTTGTTTATTTTGTAGGAAGAAAGAAAA  988

seq1  TTTTCAAAGACTGTGCAGGGGAAAGTCCAGAGCAGTTACCTGCACTCACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAGACTGTGCAGGGGAAAGTCCAGAGCAGTTACCTGCACTCACT  1038

seq1  TCTGGAGACAGGGGAGCTGCTGAGAAAAAGACTTGAGACTACAAAGAAAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGACAGGGGAGCTGCTGAGAAAAAGACTTGAGACTACAAAGAAAC  1088

seq1  TAAAAATTTAAGGAATTC  1116
      ||||||||||||||||||
seq2  TAAAAATTTAAGGAATTC  1106

seq1: chr5_121766371_121767442
seq2: B6Ng01-028O18.g_66_1119

seq1  GAATTCTTACAAGCAGACATCATGGGGCTGGAGACATAGCTTAGTGCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAAGCAGACATCATGGGGCTGGAGACATAGCTTAGTGCTTA  50

seq1  AGAGCACTGCTGTTCTTCCAAAGAACCAGGGTTCAGGTCCTAGGACCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGCTGTTCTTCCAAAGAACCAGGGTTCAGGTCCTAGGACCTAC  100

seq1  ATGGCAGCTCACAGCTGTCTATAACTCCAATTCCAGGGGTCTAAGACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCTCACAGCTGTCTATAACTCCAATTCCAGGGGTCTAAGACCCT  150

seq1  CGCACATACATGCATGCAGGCAAAACACCAATGCACATTAAAATAAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACATACATGCATGCAGGCAAAACACCAATGCACATTAAAATAAATCA  200

seq1  AAATCATTTAAGAAAACAGCAGAAGCCGGGCAGTGGTGGCGCATGCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATTTAAGAAAACAGCAGAAGCCGGGCAGTGGTGGCGCATGCCTTT  250

seq1  AACCCTGTCTTGAAAAAAAAGCAAAGCAAAGCAAAGCAAAGCAACAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCTTGAAAAAAAAGCAAAGCAAAGCAAAGCAAAGCAACAGACT  300

seq1  TTGTTTTAGGTCCTTAAATGTCTATAATTATAAAAAAAGTTATTTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAGGTCCTTAAATGTCTATAATTATAAAAAAAGTTATTTTTTTA  350

seq1  AAGGGAGATTTTATTTTATTTTATTTTATCTCATTTTAATTGGGTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGATTTTATTTTATTTTATTTTATCTCATTTTAATTGGGTCTTTC  400

seq1  TGTGTAGCCCTGGCTGGCCTGGAATTCATTATGTAGACCAGGCTGGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCCCTGGCTGGCCTGGAATTCATTATGTAGACCAGGCTGGCCTC  450

seq1  AAACTCAGAAATCTGCCTGCCTCTGCTTCCCAAGTCTTGGGATTAAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAGAAATCTGCCTGCCTCTGCTTCCCAAGTCTTGGGATTAAAGGC  500

seq1  GTGTGCCACCACTGTCCAGCCAAAAAAGGGATATTTTTTAAAAGATGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCACCACTGTCCAGCCAAAAAAGGGATATTTTTTAAAAGATGGAT  550

seq1  TTTAAAAGCTACTTTTAGATCCAGCAAGATGGCTCAGCAATAAAACTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGCTACTTTTAGATCCAGCAAGATGGCTCAGCAATAAAACTCAT  600

seq1  TGCCACTAAGCCCGGTGACCTGAGTTTCATCTCCAGAACCTTCTTGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTAAGCCCGGTGACCTGAGTTTCATCTCCAGAACCTTCTTGGTAG  650

seq1  AAGGGGAGAACCGACTCCCATAAGCTGTACTCAGATGTCTGCATCCACGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAGAACCGACTCCCATAAGCTGTACTCAGATGTCTGCATCCACGT  700

seq1  TGCAGTGCATGCAGACATGCACACACTAAAGCCAGGTTTAGCGCTATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGCATGCAGACATGCACACACTAAAGCCAGGTTTAGCGCTATACA  750

seq1  GGGCCTGCACATGACTTGGTTACTTGGTGACACAGGCCCCTTGTCACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGCACATGACTTGGTTACTTGGTGACACAGGCCCCTTGTCACATT  800

seq1  CCCCTGCAGTGGCTCACCTTCTCTGCCTTCCTTTTTGCAGTAGCTCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCAGTGGCTCACCTTCTCTGCCTTCCTTTTTGCAGTAGCTCAGAA  850

seq1  GGACGGCCCTTTCGACTCGGCACTGGTGCCAACATGGAAAAAGTTGTGAA  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGACGGCCCTTTCGACTCGGCACTGGTGCCAACATGG-AAAAGTTGTGAA  899

seq1  GATGGATCGAGACATGACCAAGGTAACCACACGGCGGAAAATGACACACA  950
      ||||||||||||||||||||||   |||||||||||||||||||||||||
seq2  GATGGATCGAGACATGACCAAG--TACCACACGGCGGAAAATGACACACA  947

seq1  CACCTTTGCCACACTTTGGAACTTCCAGAAGAATTCAGGGGGGTTTGTTT  1000
      ||||||||||||||||||||   ||||| |||  ||| ||||||||||||
seq2  CACCTTTGCCACACTTTGGA--CTCCAG-AGA--TCA-GGGGGTTTGTTT  991

seq1  TGTTTTTATTTTTAAGAAATTGCTTTTTAAAAAATTGATTCAGTTGGATT  1050
      |||||||| |||||||||| ||||||    |||| |||||||||||||||
seq2  TGTTTTTA-TTTTAAGAAA-TGCTTT----AAAAATGATTCAGTTGGATT  1035

seq1  TGTTAGCATGACCTGTAGTCCC  1072
         |||||||| ||||||||||
seq2  --GTAGCATGA-CTGTAGTCCC  1054