BAC Information

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BAC

Clone NameB6Ng01-028P07
Chromosome5 (Build37)
Map Location 149,777,981 - 149,978,310
singlet/doubletdoublet
Overlap geneLOC667386, LOC100039964, Hmgb1, EG667410
Upstream geneC130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik
Downstream geneLOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028P07.bB6Ng01-028P07.g
ACCDH859291DH859292
length1,0671,119
definitionDH859291|Mus musculus domesticus DNA, BAC clone: B6Ng01-028P07, 5' end.DH859292|Mus musculus domesticus DNA, BAC clone: B6Ng01-028P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,777,981 - 149,779,055)(149,977,187 - 149,978,310)
sequence
gtgcaggaagtaggaccaggactggggcctgttcttttgaaaacagctat
gtaaattgtatttggtcagacacacaaggccaagaattcagctgcagggc
agagagagtgcttttctagcgaacacaagaccctgcatccaatccccagc
accttgaggggggaaaagaatagacagaaggctctttggtgctcattttg
gtggattctggcagagggcatctcccatctaatgcgtgggacgagactgt
ttggagtttaagaatctccccagtttgagaccgtttccttgtacataatg
agctcatcctgcaaagagcacccaagtccaaataccacatctgtttgttt
cctatgcatagcctgaaataagtttacacggtatgttcagcatgcctgag
tattgactgtgccctgtccccgtgtcatcaggcttggaactttccgcttg
tggcctctctcatacaagctcaaaaggtttcagcatttccaattttgtgc
ttttttcttgtgtcccatgctatgtctctgcacccaacaaaataggtacc
acaggttcccccaaggaagacctcttcccatttaaacaaaagcccccatt
cctttaggggcttgcagaaagttcctacttgctagaaggggaatcactct
ccttatctctggcaataggaatctgtggcccttcattaacacatgactat
ggttcttattgatgaatgctactagtctctgaggatccccagcccagctc
acaaaccccttcctcccggtcccatctaaccctgccagtcttctttcccc
tgttgcttctccttgctttcccaggaggtggcctctgcagtttggaataa
acttctcccaattttcacccactgaatgactattttggtttctttactgc
acctattttcactcgggtcccacatgccagatctagctagaggctttggg
aagccaggccagaacctttgggctggaaaggcagctcagctgttgcgcga
ccttcgcgcagatgaaacccacatctcagagcgtgttctgtgcgtcgtgg
tttcagcagaaaaggtg
gaattcaacacaggaactcgggggaacacaaacaccctacccatagcagt
cttgaacttcatcctctaatcctgaatagtttgtaatttacttgttcaca
tttacttaaatttgcttaaatttaacccagtgagatggctcagtaggtga
aggtgctccctgcagagcctacagacctgagttcagtgtctgggacccta
agggtgcagaagagaaccagtttccaaaagttttctctgacctccacgtg
catgcggttgcacacatatgtgtcaataaaaatgcaataaaattagacat
tatatttaaaaactaaaactgcatttgactaaattcactgacatccagtc
tttcttggtcacagcagcacacacctataatcccagcactcagaaggctg
aggcagcagggccatgagttctaggccagtccggccctcacagtaaggcc
ctgttcctgctgtttctgtttagtgctaggatagagctcggggctggatg
cgtgcacggcaccgtctccaccccgtgttactccagggcctggcgttact
ctgacactcatccctcagttgtcctagccacatttcaagtactcggaagc
cagatgtggctaacagtgagagctcttgcagtgtagatcgggagtgttta
tgtcatcatagggcagtgggtctcacccttcctaatgctgtgacccttta
attcagttcctcatggtgcggggaccgccaaccatgaaattactttcatt
gccatttcataactgtaattttgctactattatgatctgtaatgcaaata
tccgtgttttctgatggtcttaggtgacccctgcaacccacaggttgagg
actgctatgaaagaaagtctacattgttgtcttagatctcttgtcctctt
acctctctgtgcctaccacacctttctcttctttcttacctatttaggag
caacttgttattacaggtttgtgtctcagttttaggtaaagtaagcagtg
tttctagacagccctgtcaatgcccaatttctgggttcagtgctgggctt
gtactttcattgtgattcctatgtgagaattaggtccacgtcgctaactt
tgagacaggacactttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_149777981_149779055
seq2: B6Ng01-028P07.b_54_1120

seq1  GTGCAGGAAGTAGGACCAGGACTGGGGCCTGTTCTTTTGAAAACAGCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGAAGTAGGACCAGGACTGGGGCCTGTTCTTTTGAAAACAGCTAT  50

seq1  GTAAATTGTATTTGGTCAGACACACAAGGCCAAGAATTCAGCTGCAGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGTATTTGGTCAGACACACAAGGCCAAGAATTCAGCTGCAGGGC  100

seq1  AGAGAGAGTGCTTTTCTAGCGAACACAAGACCCTGCATCCAATCCCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGTGCTTTTCTAGCGAACACAAGACCCTGCATCCAATCCCCAGC  150

seq1  ACCTTGAGGGGGGAAAAGAATAGACAGAAGGCTCTTTGGTGCTCATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAGGGGGGAAAAGAATAGACAGAAGGCTCTTTGGTGCTCATTTTG  200

seq1  GTGGATTCTGGCAGAGGGCATCTCCCATCTAATGCGTGGGACGAGACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTCTGGCAGAGGGCATCTCCCATCTAATGCGTGGGACGAGACTGT  250

seq1  TTGGAGTTTAAGAATCTCCCCAGTTTGAGACCGTTTCCTTGTACATAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTTAAGAATCTCCCCAGTTTGAGACCGTTTCCTTGTACATAATG  300

seq1  AGCTCATCCTGCAAAGAGCACCCAAGTCCAAATACCACATCTGTTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATCCTGCAAAGAGCACCCAAGTCCAAATACCACATCTGTTTGTTT  350

seq1  CCTATGCATAGCCTGAAATAAGTTTACACGGTATGTTCAGCATGCCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCATAGCCTGAAATAAGTTTACACGGTATGTTCAGCATGCCTGAG  400

seq1  TATTGACTGTGCCCTGTCCCCGTGTCATCAGGCTTGGAACTTTCCGCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACTGTGCCCTGTCCCCGTGTCATCAGGCTTGGAACTTTCCGCTTG  450

seq1  TGGCCTCTCTCATACAAGCTCAAAAGGTTTCAGCATTTCCAATTTTGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCTCTCATACAAGCTCAAAAGGTTTCAGCATTTCCAATTTTGTGC  500

seq1  TTTTTTCTTGTGTCCCATGCTATGTCTCTGCACCCAACAAAATAGGTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTGTGTCCCATGCTATGTCTCTGCACCCAACAAAATAGGTACC  550

seq1  ACAGGTTCCCCCAAGGAAGACCTCTTCCCATTTAAACAAAAGCCCCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTCCCCCAAGGAAGACCTCTTCCCATTTAAACAAAAGCCCCCATT  600

seq1  CCTTTAGGGGCTTGCAGAAAGTTCCTACTTGCTAGAAGGGGAATCACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGGGGCTTGCAGAAAGTTCCTACTTGCTAGAAGGGGAATCACTCT  650

seq1  CCTTATCTCTGGCAATAGGAATCTGTGGCCCTTCATTAACACATGACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCTCTGGCAATAGGAATCTGTGGCCCTTCATTAACACATGACTAT  700

seq1  GGTTCTTATTGATGAATGCTACTAGTCTCTGAGGATCCCCAGCCCAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTATTGATGAATGCTACTAGTCTCTGAGGATCCCCAGCCCAGCTC  750

seq1  ACAAACCCCTTCCTCCCGGTCCCATCTAACCCTGCCAGTCTTCTTTCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCCCTTCCTCCCGGTCCCATCTAACCCTGCCAGTCTTCTTTCCCC  800

seq1  TGTTGCTTCTCCTTGCTTTCCCAGGAGGTGGCCTCTGCAGTTTGGAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTCTCCTTGCTTTCCCAGGAGGTGGCCTCTGCAGTTTGGAATAA  850

seq1  ACTTCTCCCAATTTTCACCCACTGAATGACTATTTTGGTTTCTTTACTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCCAATTTTCACCCACTGAATGACTATTTTGGTTTCTTTACTGC  900

seq1  ACCTATTTTCACTCGGGTCCCACATGCCAGATCTAGCTAGAGGCTTTGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTTCACTCGGGTCCCACATGCCAGATCTAGCTAGAGGCTTTGGG  950

seq1  AAGCCAGGCCAGAACCTTTGGGCTGGAAAGGCAGCTCAGCTGTTTGCGCG  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  AAGCCAGGCCAGAACCTTTGGGCTGGAAAGGCAGCTCAGCTG-TTGCGC-  998

seq1  GACCTTCGCGGCAGATGAAACCCACAATTCTCAGAAGCGTG-TCTGTGCG  1049
      ||||||||| ||||||||||||||||  |||||| |||||| ||||||||
seq2  GACCTTCGC-GCAGATGAAACCCACA--TCTCAG-AGCGTGTTCTGTGCG  1044

seq1  TTCGTGGGTTTCAGCAGGAAAAGGTG  1075
       |||| |||||||||| |||||||||
seq2  -TCGT-GGTTTCAGCA-GAAAAGGTG  1067

seq1: chr5_149977187_149978310
seq2: B6Ng01-028P07.g_67_1185 (reverse)

seq1  CAGAAAGTGTCCTGTCTCAAAGTTAGACAGACGTGGACCTAAATCTTCAC  50
      ||||||||||||||||||||||||||   ||||||||||||| || ||||
seq2  CAGAAAGTGTCCTGTCTCAAAGTTAG--CGACGTGGACCTAATTC-TCAC  47

seq1  ATAGGATCAACAATGAAAGTACAAGCCCAGGCACTGAACCCAGAAAATGG  100
      ||||||   |||||||||||||||||||| |||||||||||||||| |||
seq2  ATAGGAATCACAATGAAAGTACAAGCCCA-GCACTGAACCCAGAAATTGG  96

seq1  GCATTGACAGGGCTGTCTAGAAACACTGCTTACCTTAACTAATACCTGAG  150
      ||||||||||||||||||||||||||||||||| ||| |||| | |||||
seq2  GCATTGACAGGGCTGTCTAGAAACACTGCTTACTTTACCTAA-AACTGAG  145

seq1  ACACAAACCTGTAATAACAAGTTGCTCTTAAATAGGTAAGAAAGAAGAGA  200
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACACAAACCTGTAATAACAAGTTGCTCCTAAATAGGTAAGAAAGAAGAGA  195

seq1  AAGGTGTGGTAGGCACAGAGAGGTAAGAGGACAAGAGATCTAAGACAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTGGTAGGCACAGAGAGGTAAGAGGACAAGAGATCTAAGACAACA  245

seq1  ATGTAGACTTTCTTTCATAGCAGTCCTCAACCTGTGGGTTGCAGGGGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACTTTCTTTCATAGCAGTCCTCAACCTGTGGGTTGCAGGGGTCA  295

seq1  CCTAAGACCATCAGAAAACACGGATATTTGCATTACAGATCATAATAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGACCATCAGAAAACACGGATATTTGCATTACAGATCATAATAGTA  345

seq1  GCAAAATTACAGTTATGAAATGGCAATGAAAGTAATTTCATGGTTGGCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTACAGTTATGAAATGGCAATGAAAGTAATTTCATGGTTGGCGG  395

seq1  TCCCCGCACCATGAGGAACTGAATTAAAGGGTCACAGCATTAGGAAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGCACCATGAGGAACTGAATTAAAGGGTCACAGCATTAGGAAGGGT  445

seq1  GAGACCCACTGCCCTATGATGACATAAACACTCCCGATCTACACTGCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCACTGCCCTATGATGACATAAACACTCCCGATCTACACTGCAAG  495

seq1  AGCTCTCACTGTTAGCCACATCTGGCTTCCGAGTACTTGAAATGTGGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCACTGTTAGCCACATCTGGCTTCCGAGTACTTGAAATGTGGCTA  545

seq1  GGACAACTGAGGGATGAGTGTCAGAGTAACGCCAGGCCCTGGAGTAACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACTGAGGGATGAGTGTCAGAGTAACGCCAGGCCCTGGAGTAACAC  595

seq1  GGGGTGGAGACGGTGCCGTGCACGCATCCAGCCCCGAGCTCTATCCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGGAGACGGTGCCGTGCACGCATCCAGCCCCGAGCTCTATCCTAGC  645

seq1  ACTAAACAGAAACAGCAGGAACAGGGCCTTACTGTGAGGGCCGGACTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACAGAAACAGCAGGAACAGGGCCTTACTGTGAGGGCCGGACTGGC  695

seq1  CTAGAACTCATGGCCCTGCTGCCTCAGCCTTCTGAGTGCTGGGATTATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACTCATGGCCCTGCTGCCTCAGCCTTCTGAGTGCTGGGATTATAG  745

seq1  GTGTGTGCTGCTGTGACCAAGAAAGACTGGATGTCAGTGAATTTAGTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCTGCTGTGACCAAGAAAGACTGGATGTCAGTGAATTTAGTCAA  795

seq1  ATGCAGTTTTAGTTTTTAAATATAATGTCTAATTTTATTGCATTTTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTTTAGTTTTTAAATATAATGTCTAATTTTATTGCATTTTTATT  845

seq1  GACACATATGTGTGCAACCGCATGCACGTGGAGGTCAGAGAAAACTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATATGTGTGCAACCGCATGCACGTGGAGGTCAGAGAAAACTTTTG  895

seq1  GAAACTGGTTCTCTTCTGCACCCTTAGGGTCCCAGACACTGAACTCAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGGTTCTCTTCTGCACCCTTAGGGTCCCAGACACTGAACTCAGGT  945

seq1  CTGTAGGCTCTGCAGGGAGCACCTTCACCTACTGAGCCATCTCACTGGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGCTCTGCAGGGAGCACCTTCACCTACTGAGCCATCTCACTGGGT  995

seq1  TAAATTTAAGCAAATTTAAGTAAATGTGAACAAGTAAATTACAAACTATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAAGCAAATTTAAGTAAATGTGAACAAGTAAATTACAAACTATT  1045

seq1  CAGGATTAGAGGATGAAGTTCAAGACTGCTATGGGTAGGGTGTTTGTGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTAGAGGATGAAGTTCAAGACTGCTATGGGTAGGGTGTTTGTGTT  1095

seq1  CCCCCGAGTTCCTGTGTTGAATTC  1124
      ||||||||||||||||||||||||
seq2  CCCCCGAGTTCCTGTGTTGAATTC  1119