BAC Information

Click to search

BAC

Clone NameB6Ng01-029A13
Chromosome5 (Build37)
Map Location 58,228,651 - 58,348,279
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029A13.bB6Ng01-029A13.g
ACCDH859348DH859349
length9911,030
definitionDH859348|Mus musculus domesticus DNA, BAC clone: B6Ng01-029A13, 5' end.DH859349|Mus musculus domesticus DNA, BAC clone: B6Ng01-029A13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,347,280 - 58,348,279)(58,228,651 - 58,229,676)
sequence
gaattcccctgacctgagcttgagccgggagagtcttacttccctcctcc
ccttctccatccatcctcccctttatgtcttcccttacagtaacttgtgt
tttcatccataataaattcttttgttatcaagatgtatgttttccctatg
agccctgagtttgtagtatgataaaaacaacacatgcttaacatttttcc
aagtgcctggatattaaacagtaactgatgtacaagtttcatctaaaaca
tatttgaacaataaatttaatcaatattttcaaggaagaacagtaaatac
tatagtcagaattatatttatttaacttatttgatttttaggtggagcat
gttcagcaaaaatctaagaactacatgtattggttaaaaatacatggaag
gtactgattagtaccccccagagttgagtctctagttgcatatgtagcag
aggttggcctagttggcaatcaatgggaggagaggcccttggtcttgtga
agatcatatgccccagaacaagggaatgccagggccaggaagcaggagtg
ggtaggttatggagcagggcagggggagggtataggggctttggggatag
catgtgaaatgtaaatgaagaaaacatctaataaaaaaaaaagaaaaaat
acatggagaatgtcctgaggataaattacataaaaatatatatagtgaaa
tatatagcatatattggaaaggcatatcatgggaataaagtaccaaaagg
agttggaatacataagaagagttgtagggtttgtgacacttttactgcac
tgctttctctctaaaactcactgtttactccctgctaaaaatacacacat
tgcggttttttttcctcggattacagtctgtatagttttctttaaaggca
taagctatatttaagaagcaagagcaagttcggaagatattataatcagg
catctttttgaagaacactgtcacattagattgttgattct
gaattcttttctgcagcattccagaaataattgcctaccgtttaatctag
aaacagattagaccataaaaaaaaagtcagactgcagaacctaagaagtt
gatggtccatagatatgaacacaaaaccaaaggtggaaaagagcatttaa
gaacatttgcaaataaagttgcttaaaacacagctgaactttggtggaga
gatgatcttctgttgtggtggttttgtctttcagttacagttttcttcct
ggaggaaggttgcaagggcagaggacaaatgtggaggaatgggcagatga
gttggatcggggtgactgatgtgaaattcagaaagatcaatataatgcta
agtaaaaagaacacacatgagtatgtagtctcagtggagtgacaggtttg
ctttgaaatatatgccagagggttcattttgtttcagagtgatgaactgt
tttaattaatgtcttctttatagtttgaaaaagttgcacagattttctta
aaaggtaatgttttataaattgaagagcatgtacatgctactcacaaatg
atattttctgcactttctacaaaataattctaactctatcctccatatat
ctacaaatgaaattagaacataaagcattaatcctaacacaaagaacaaa
atttaaaattagctgaacattcactaacacacacacagttactatatttg
ggtttatgctttacttatacaaggtcagctctgttccaatttggcactga
tagttcacaagagtgttttaagttccaaacgctgcagccaaatatcgttt
ccatcatgctgggctcggggcaaagagagatgatctggttcacttgtatt
cagaatgcctaggtgctccatatggctttctttccttggcaagtgtgtcc
ttaaaaatctttgggcactctattataattgtataaataatataaattag
cattctagtgtattttgagctctttgccagtgagtgaagaggtaaaatag
atggaaaaatatatattaatactatatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58347280_58348279
seq2: B6Ng01-029A13.b_48_1038 (reverse)

seq1  AGAATCAAGCAATTCTTACTGTTGACAGTGTTCTTTCAAAAGGATAGCCT  50
      |||||||| ||||   || || ||||||||||| ||||||| ||| ||||
seq2  AGAATCAA-CAAT--CTAATG-TGACAGTGTTC-TTCAAAAAGAT-GCCT  44

seq1  GAATATTATATCTTCCCGACTTTGCTCTCGCTTCTTAAAATTATAGCTTA  100
      || ||| ||||||| ||||  ||||||| ||||||||||  |||||||||
seq2  GATTATAATATCTT-CCGAACTTGCTCTTGCTTCTTAAA--TATAGCTTA  91

seq1  TGCCTTTGAATGAAAACTATACAGACTGTAATCGGAGGAAAAAAAAACCG  150
      ||||||| || |||||||||||||||||||||| |||| |||||||||||
seq2  TGCCTTT-AAAGAAAACTATACAGACTGTAATCCGAGG-AAAAAAAACCG  139

seq1  CAATTGTGTGTATTTTTAGCA-GGAGTAAACAGTGAGTTTTAGAGAGAAA  199
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAA-TGTGTGTATTTTTAGCAGGGAGTAAACAGTGAGTTTTAGAGAGAAA  188

seq1  GCAGTGCAGT-AAAGTGTCACAAACCCTACAACTCTTCTTATGTATTCCA  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCAGTAAAAGTGTCACAAACCCTACAACTCTTCTTATGTATTCCA  238

seq1  ACTCCTTTTGGTACTTTATTCCCATGATATGCCTTTCCAATATATGCTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTTTGGTACTTTATTCCCATGATATGCCTTTCCAATATATGCTAT  288

seq1  ATATTTCACTATATATA-TTTTATGTAATTTATCCTCAGGACATTCTCCA  347
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATATTTCACTATATATATTTTTATGTAATTTATCCTCAGGACATTCTCCA  338

seq1  TGTATTTTTTCTTTTTTTTTTATTAGATGTTTTCTTCATTTACATTTCAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTTTCTTTTTTTTTTATTAGATGTTTTCTTCATTTACATTTCAC  388

seq1  ATGCTATCCCCAAAGCCCCTATACCCTCCCCCTGCCCTGCTCCATAACCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCCCCAAAGCCCCTATACCCTCCCCCTGCCCTGCTCCATAACCT  438

seq1  ACCCACTCCTGCTTCCTGGCCCTGGCATTCCCTTGTTCTGGGGCATATGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTCCTGCTTCCTGGCCCTGGCATTCCCTTGTTCTGGGGCATATGA  488

seq1  TCTTCACAAGACCAAGGGCCTCTCCTCCCATTGATTGCCAACTAGGCCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAAGACCAAGGGCCTCTCCTCCCATTGATTGCCAACTAGGCCAA  538

seq1  CCTCTGCTACATATGCAACTAGAGACTCAACTCTGGGGGGTACTAATCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTACATATGCAACTAGAGACTCAACTCTGGGGGGTACTAATCAG  588

seq1  TACCTTCCATGTATTTTTAACCAATACATGTAGTTCTTAGATTTTTGCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCCATGTATTTTTAACCAATACATGTAGTTCTTAGATTTTTGCTG  638

seq1  AACATGCTCCACCTAAAAATCAAATAAGTTAAATAAATATAATTCTGACT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCTCCACCTAAAAATCAAATAAGTTAAATAAATATAATTCTGACT  688

seq1  ATAGTATTTACTGTTCTTCCTTGAAAATATTGATTAAATTTATTGTTCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATTTACTGTTCTTCCTTGAAAATATTGATTAAATTTATTGTTCAA  738

seq1  ATATGTTTTAGATGAAACTTGTACATCAGTTACTGTTTAATATCCAGGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTTAGATGAAACTTGTACATCAGTTACTGTTTAATATCCAGGCA  788

seq1  CTTGGAAAAATGTTAAGCATGTGTTGTTTTTATCATACTACAAACTCAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAAATGTTAAGCATGTGTTGTTTTTATCATACTACAAACTCAGG  838

seq1  GCTCATAGGGAAAACATACATCTTGATAACAAAAGAATTTATTATGGATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAGGGAAAACATACATCTTGATAACAAAAGAATTTATTATGGATG  888

seq1  AAAACACAAGTTACTGTAAGGGAAGACATAAAGGGGAGGATGGATGGAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACAAGTTACTGTAAGGGAAGACATAAAGGGGAGGATGGATGGAGA  938

seq1  AGGGGAGGAGGGAAGTAAGACTCTCCCGGCTCAAGCTCAGGTCAGGGGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGGAGGGAAGTAAGACTCTCCCGGCTCAAGCTCAGGTCAGGGGAA  988

seq1  TTC  1000
      |||
seq2  TTC  991

seq1: chr5_58228651_58229676
seq2: B6Ng01-029A13.g_66_1095

seq1  GAATTCTTTTCTGCAGCATTCCAGAAATAATTGCCTACCGTTTAATCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTGCAGCATTCCAGAAATAATTGCCTACCGTTTAATCTAG  50

seq1  AAACAGATTAGACCATAAAAAAAAAGTCAGACTGCAGAACCTAAGAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATTAGACCATAAAAAAAAAGTCAGACTGCAGAACCTAAGAAGTT  100

seq1  GATGGTCCATAGATATGAACACAAAACCAAAGGTGGAAAAGAGCATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCCATAGATATGAACACAAAACCAAAGGTGGAAAAGAGCATTTAA  150

seq1  GAACATTTGCAAATAAAGTTGCTTAAAACACAGCTGAACTTTGGTGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTGCAAATAAAGTTGCTTAAAACACAGCTGAACTTTGGTGGAGA  200

seq1  GATGATCTTCTGTTGTGGTGGTTTTGTCTTTCAGTTACAGTTTTCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATCTTCTGTTGTGGTGGTTTTGTCTTTCAGTTACAGTTTTCTTCCT  250

seq1  GGAGGAAGGTTGCAAGGGCAGAGGACAAATGTGGAGGAATGGGCAGATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGGTTGCAAGGGCAGAGGACAAATGTGGAGGAATGGGCAGATGA  300

seq1  GTTGGATCGGGGTGACTGATGTGAAATTCAGAAAGATCAATATAATGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATCGGGGTGACTGATGTGAAATTCAGAAAGATCAATATAATGCTA  350

seq1  AGTAAAAAGAACACACATGAGTATGTAGTCTCAGTGGAGTGACAGGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAGAACACACATGAGTATGTAGTCTCAGTGGAGTGACAGGTTTG  400

seq1  CTTTGAAATATATGCCAGAGGGTTCATTTTGTTTCAGAGTGATGAACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAATATATGCCAGAGGGTTCATTTTGTTTCAGAGTGATGAACTGT  450

seq1  TTTAATTAATGTCTTCTTTATAGTTTGAAAAAGTTGCACAGATTTTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAATGTCTTCTTTATAGTTTGAAAAAGTTGCACAGATTTTCTTA  500

seq1  AAAGGTAATGTTTTATAAATTGAAGAGCATGTACATGCTACTCACAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAATGTTTTATAAATTGAAGAGCATGTACATGCTACTCACAAATG  550

seq1  ATATTTTCTGCACTTTCTACAAAATAATTCTAACTCTATCCTCCATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTGCACTTTCTACAAAATAATTCTAACTCTATCCTCCATATAT  600

seq1  CTACAAATGAAATTAGAACATAAAGCATTAATCCTAACACAAAGAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAATGAAATTAGAACATAAAGCATTAATCCTAACACAAAGAACAAA  650

seq1  ATTTAAAATTAGCTGAACATTCACTAACACACACACAGTTACTATATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATTAGCTGAACATTCACTAACACACACACAGTTACTATATTTG  700

seq1  GGTTTATGCTTTACTTATACAAGGTCAGCTCTGTTCCAATTTGGCACTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATGCTTTACTTATACAAGGTCAGCTCTGTTCCAATTTGGCACTGA  750

seq1  TAGTTCACAAGAGTGTTTTAAGTTCCAAACGCTGCAGCCAAATATCGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCACAAGAGTGTTTTAAGTTCCAAACGCTGCAGCCAAATATCGTTT  800

seq1  CCATCATGCTGGGCTCGGGGCAAAGAGAGATGATCTGGTTCACTTGTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATGCTGGGCTCGGGGCAAAGAGAGATGATCTGGTTCACTTGTATT  850

seq1  CAGAATGCCTAGGTGCTCCATATGGCTTTCTTTCCCTTGGCAAGTGTGTC  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGAATGCCTAGGTGCTCCATATGGCTTTCTTT-CCTTGGCAAGTGTGTC  899

seq1  CTTAAAAATCTTTGGGCACTCTATTATAATTGTATAAATAATATAAATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAATCTTTGGGCACTCTATTATAATTGTATAAATAATATAAATTA  949

seq1  GCATTCTAGTGTATTTTGAGCTCTTTGCCAAGTGAGTG-AGAGGTAAAAT  999
      ||||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  GCATTCTAGTGTATTTTGAGCTCTTTGCC-AGTGAGTGAAGAGGTAAAAT  998

seq1  AGAATGGAAGATATATAT-----ATATATATA  1026
      |||  | || ||||||||      ||||||||
seq2  AGATGGAAAAATATATATTAATACTATATATA  1030