BAC Information

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BAC

Clone NameB6Ng01-029B10
Chromosome5 (Build37)
Map Location 86,803,652 - 86,804,780
singlet/doubletsinglet
Overlap genenone
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d
Downstream geneTmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029B10.bB6Ng01-029B10.g
ACCDH859386DH859387
length1,120946
definitionDH859386|Mus musculus domesticus DNA, BAC clone: B6Ng01-029B10, 5' end.DH859387|Mus musculus domesticus DNA, BAC clone: B6Ng01-029B10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattaaaacaagtgatcagtcactcacacattttaaaatagaac
ggcaatctagacaacattgatagaactaagtggtaatccccctttacaca
ttataaacgcatctttagacattctctctcatgcctgattctatatttag
tattttcaatgagaggagtgaaatacattttcaaaattacacattttacc
tgaatttttgttttttagtttttttatttactaacttcaagttattcatt
tatagatcactctcttcagtgcatttgaatagtatcctggtacaaaaatt
tatattgtattataatactcaatgttattccatgaaaatgttctgatttc
taagtcttatacctagtagcttatatttctcaatataatttcaaactcaa
aaaattaaagaacctacatttaacatttattaacaatttaatgtttatat
catagaagacaaatcacattatcatgaatagattcatcattaagtacaga
aactgcttttttaatgtggaatgttttaaatcatttagatttttttctat
ttcagctgattttttgttaactccataaacatagtatttctatttcatgc
tcttactgaattgggacttaaaatacatcgagaagtcatattggatcaaa
taagtgcaaaagctgtccttgaactaacaattatcctctcacctccactt
ctcaagtaccaagattataggtgtatattaagatacacaggaagtcttaa
tatttaatgactttaccttttaaacttattttaatatttttctatatttg
aaatgctgccttctgtttcatttacaacaatttctcttaaaaggtagccc
tttctcctacatcttatgattcctgtatactcatttctatggattcatca
agactatttttaccgaacaggtgcttaattgagacagactgtttaaatgt
tcaacatctactctccttccatacatctactgctaaccggttacacatgt
cacaacaggacttgaaatgagtcaaggagtgtcatggggaaactgtactc
agtctgaaagcgactttctggatgcttacaatggccacacagaaagggag
gtggggctgaaattagtctg
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggcgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgccgcctcagaagctctgtggctcttgtccggaaggaggc
cggccgtctggagctgaagatggcgccacccagaagctctgcgactctcg
cccgtcccagaaatggctggcactctgtattccacacggtcacccgtgca
gcctgccctccgcggagtcccggagccaagaaggctcccgccggcgcctg
tgccacaaacctctcaggccgggcagacccccctgctctcaccaggaagg
tggccggctgtctctctttctttcttttttatctatcacttttttttaca
gttctagtcatttcccccctcccagtactcccgtccacagttcctcatca
cattcttcctcccccctgtctccaagaaaatgtccccacccacccaccaa
ccaccccacccatctattttcaccaggcctccccactccctaggtgccta
atcctttgggtccctgtgctgcttaggaaaaagtctctacagtaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86803652_86804780
seq2: B6Ng01-029B10.b_43_1162

seq1  GAATTCAATTAAAACAAGTGATCAGTCACTCACACATTTTAAAATAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAAAACAAGTGATCAGTCACTCACACATTTTAAAATAGAAC  50

seq1  GGCAATCTAGACAACATTGATAGAACTAAGTGGTAATCCCCCTTTACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATCTAGACAACATTGATAGAACTAAGTGGTAATCCCCCTTTACACA  100

seq1  TTATAAACGCATCTTTAGACATTCTCTCTCATGCCTGATTCTATATTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACGCATCTTTAGACATTCTCTCTCATGCCTGATTCTATATTTAG  150

seq1  TATTTTCAATGAGAGGAGTGAAATACATTTTCAAAATTACACATTTTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAATGAGAGGAGTGAAATACATTTTCAAAATTACACATTTTACC  200

seq1  TGAATTTTTGTTTTTTAGTTTTTTTATTTACTAACTTCAAGTTATTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTTGTTTTTTAGTTTTTTTATTTACTAACTTCAAGTTATTCATT  250

seq1  TATAGATCACTCTCTTCAGTGCATTTGAATAGTATCCTGGTACAAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATCACTCTCTTCAGTGCATTTGAATAGTATCCTGGTACAAAAATT  300

seq1  TATATTGTATTATAATACTCAATGTTATTCCATGAAAATGTTCTGATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTATTATAATACTCAATGTTATTCCATGAAAATGTTCTGATTTC  350

seq1  TAAGTCTTATACCTAGTAGCTTATATTTCTCAATATAATTTCAAACTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTTATACCTAGTAGCTTATATTTCTCAATATAATTTCAAACTCAA  400

seq1  AAAATTAAAGAACCTACATTTAACATTTATTAACAATTTAATGTTTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAAGAACCTACATTTAACATTTATTAACAATTTAATGTTTATAT  450

seq1  CATAGAAGACAAATCACATTATCATGAATAGATTCATCATTAAGTACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGACAAATCACATTATCATGAATAGATTCATCATTAAGTACAGA  500

seq1  AACTGCTTTTTTAATGTGGAATGTTTTAAATCATTTAGATTTTTTTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTTTTTTAATGTGGAATGTTTTAAATCATTTAGATTTTTTTCTAT  550

seq1  TTCAGCTGATTTTTTGTTAACTCCATAAACATAGTATTTCTATTTCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGATTTTTTGTTAACTCCATAAACATAGTATTTCTATTTCATGC  600

seq1  TCTTACTGAATTGGGACTTAAAATACATCGAGAAGTCATATTGGATCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTGAATTGGGACTTAAAATACATCGAGAAGTCATATTGGATCAAA  650

seq1  TAAGTGCAAAAGCTGTCCTTGAACTAACAATTATCCTCTCACCTCCACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCAAAAGCTGTCCTTGAACTAACAATTATCCTCTCACCTCCACTT  700

seq1  CTCAAGTACCAAGATTATAGGTGTATATTAAGATACACAGGAAGTCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTACCAAGATTATAGGTGTATATTAAGATACACAGGAAGTCTTAA  750

seq1  TATTTAATGACTTTACCTTTTAAACTTATTTTAATATTTTTCTATATTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATGACTTTACCTTTTAAACTTATTTTAATATTTTTCTATATTTG  800

seq1  AAATGCTGCCTTCTGTTTCATTTACAACAATTTCTCTTAAAAGGTAGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGCCTTCTGTTTCATTTACAACAATTTCTCTTAAAAGGTAGCCC  850

seq1  TTTCTCCTACATCTTATGATTCCTGTATACTCATTTCTATGGATTCATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTACATCTTATGATTCCTGTATACTCATTTCTATGGATTCATCA  900

seq1  AGACTATTTTTACCGAACAGGTGCTTAATTGAGACAGACTGTTTAAATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTATTTTTACCGAACAGGTGCTTAATTGAGACAGACTGTTTAAATGT  950

seq1  TCAACATCTTACTCTCCTTCCATACATCTACTGCTAACCGGTTACACAAT  1000
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  TCAACATC-TACTCTCCTTCCATACATCTACTGCTAACCGGTTACAC-AT  998

seq1  GTCACAACAGAACTTGAAAATGAGTCAAGGGAGTGTCATGGGGAAAACTG  1050
      |||||||||| ||||| ||||||||||| |||||||||||||| ||||||
seq2  GTCACAACAGGACTTG-AAATGAGTCAA-GGAGTGTCATGGGG-AAACTG  1045

seq1  TACTCAGTCTGAAAGCGACTTCCTGGATGCTTACAATGGGCTCAACACAG  1100
      ||||||||||||||||||||| |||||||||||||||||   | ||||||
seq2  TACTCAGTCTGAAAGCGACTTTCTGGATGCTTACAATGG---CCACACAG  1092

seq1  AAAGGGAGGTGGGGCTGAAATTACGTCTG  1129
      ||||||||||||||||||||||| |||||
seq2  AAAGGGAGGTGGGGCTGAAATTA-GTCTG  1120