BAC Information

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BAC

Clone NameB6Ng01-029F17
Chromosome15 (Build37)5 (Build37)
Map Location 100,453,758 - 100,454,79075,488,936 - 75,488,986
singlet/doubletsingletsinglet
Overlap geneBC004728
Upstream geneRacgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2
Downstream geneBin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029F17.bB6Ng01-029F17.g
ACCDH859578DH859579
length1,031274
definitionDH859578|Mus musculus domesticus DNA, BAC clone: B6Ng01-029F17, 5' end.DH859579|Mus musculus domesticus DNA, BAC clone: B6Ng01-029F17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,453,758 - 100,454,790)(75,488,936 - 75,488,986)
sequence
gaattccaggctagccagggttattgaatgagaccatgagggggttgggt
tttgctaggtgtggtgacatgtctataatcccagaactcagggctgagaa
agattgttcaagatcctcctgtactatatagagctccaggctacaaatac
aatccctgtcctttgccagctgtgcgcccttggataagaaagaatcacct
aacccatctgcatcgctcgctgcagatgctaacggggtgacaatacctag
ttgtacgattgtaactatgacactacgacaggagggttatagtaatgtaa
ggggcacgttgagtgcagagagagagagaaggggggatgtaaacgtctgt
gtctctgtgtgtctgtgtatgtatgtggtatgtgtctgtgtgtgtgatgc
agcatcatggtgtatccagtacattttgcagcgttctacatactctaaca
tactcctgcccgtggggtgtacttgtggaagtcacaggggacgagttctg
ggctccatcctcaccatcctctcggtttgacacaggatctcttcctgtcc
tctgctccctacactggctggcctgtgaggagtctcctgtctccacgtcc
cacctcactatggcagtgctgagctggcaaaggcatgctgctgccaggtg
cccttcacctttaaccccggtgtttaggagatggacaggtggatcgatgc
gatttccaggccagccagtaccagtgggaatgtttctaaagcaaaacaaa
tgcatgataccacctatggctttactcacgttctcatgcttgtacagcaa
gggccttgcccaccgagccttctccccggccttacatattataaacgtga
tttctaagtataaaatactattctttttttttttttttttaagattttta
atttattttatgaatatgggtacagtgttgctgtcctcaggcacaccaga
agagggcatcagatctcattacagatgggtgtgagccaccatattggttg
ctgggaattgaactcagacctcttgaagaac
tcatcaaaatgccagtgccaatcttctgagaaatagaaaaaagattctaa
aatgcataagcaatgttgtgttttatgagagagagagagagagagagaga
gagcgagagagagcgccaggatatgtttgctagagctgggtatggtgagg
tggaagagggcgcctttgcggcccatgctaagacatcccttccccctgag
gtaccagatatataaacagatatagtatggaacagagtttatttagggca
tgggaaggggagttgaggagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100453758_100454790
seq2: B6Ng01-029F17.b_45_1075

seq1  GAATTCCAGGCTAGCCAGGGTTATTGAATGAGACCATGAGGGGGTTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTAGCCAGGGTTATTGAATGAGACCATGAGGGGGTTGGGT  50

seq1  TTTGCTAGGTGTGGTGACATGTCTATAATCCCAGAACTCAGGGCTGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGGTGTGGTGACATGTCTATAATCCCAGAACTCAGGGCTGAGAA  100

seq1  AGATTGTTCAAGATCCTCCTGTACTATATAGAGCTCCAGGCTACAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTCAAGATCCTCCTGTACTATATAGAGCTCCAGGCTACAAATAC  150

seq1  AATCCCTGTCCTTTGCCAGCTGTGCGCCCTTGGATAAGAAAGAATCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTGTCCTTTGCCAGCTGTGCGCCCTTGGATAAGAAAGAATCACCT  200

seq1  AACCCATCTGCATCGCTCGCTGCAGATGCTAACGGGGTGACAATACCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATCTGCATCGCTCGCTGCAGATGCTAACGGGGTGACAATACCTAG  250

seq1  TTGTACGATTGTAACTATGACACTACGACAGGAGGGTTATAGTAATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACGATTGTAACTATGACACTACGACAGGAGGGTTATAGTAATGTAA  300

seq1  GGGGCACGTTGAGTGCAGAGAGAGAGAGAAGGGGGGATGTAAACGTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACGTTGAGTGCAGAGAGAGAGAGAAGGGGGGATGTAAACGTCTGT  350

seq1  GTCTCTGTGTGTCTGTGTATGTATGTGGTATGTGTCTGTGTGTGTGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTGTGTCTGTGTATGTATGTGGTATGTGTCTGTGTGTGTGATGC  400

seq1  AGCATCATGGTGTATCCAGTACATTTTGCAGCGTTCTACATACTCTAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCATGGTGTATCCAGTACATTTTGCAGCGTTCTACATACTCTAACA  450

seq1  TACTCCTGCCCGTGGGGTGTACTTGTGGAAGTCACAGGGGACGAGTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTGCCCGTGGGGTGTACTTGTGGAAGTCACAGGGGACGAGTTCTG  500

seq1  GGCTCCATCCTCACCATCCTCTCGGTTTGACACAGGATCTCTTCCTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCATCCTCACCATCCTCTCGGTTTGACACAGGATCTCTTCCTGTCC  550

seq1  TCTGCTCCCTACACTGGCTGGCCTGTGAGGAGTCTCCTGTCTCCACGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCCTACACTGGCTGGCCTGTGAGGAGTCTCCTGTCTCCACGTCC  600

seq1  CACCTCACTATGGCAGTGCTGAGCTGGCAAAGGCATGCTGCTGCCAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCACTATGGCAGTGCTGAGCTGGCAAAGGCATGCTGCTGCCAGGTG  650

seq1  CCCTTCACCTTTAACCCCGGTGTTTAGGAGATGGACAGGTGGATCGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCACCTTTAACCCCGGTGTTTAGGAGATGGACAGGTGGATCGATGC  700

seq1  GATTTCCAGGCCAGCCAGTACCAGTGGGAATGTTTCTAAAGCAAAACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCAGGCCAGCCAGTACCAGTGGGAATGTTTCTAAAGCAAAACAAA  750

seq1  TGCATGATACCACCTATGGCTTTACTCAGGTTCTCATGCTTGTACAGCAA  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGCATGATACCACCTATGGCTTTACTCACGTTCTCATGCTTGTACAGCAA  800

seq1  GGGCCTTGCCCACCGAGCCTTCTCCCCGGCCTTACATATTATAAACGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTGCCCACCGAGCCTTCTCCCCGGCCTTACATATTATAAACGTGA  850

seq1  TTTCTAAGTAATAAAATACTATTCTTTTTTTTTTTTTTTTTAAGATTTTT  900
      ||||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  TTTCTAAGT-ATAAAATACTATTCTTTTTTTTTTTTTTTTTAAGA-TTTT  898

seq1  TAATTTATTTTATGAATATGGGTACAGTGTTGCTGTCCTCAGACACACCA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAATTTATTTTATGAATATGGGTACAGTGTTGCTGTCCTCAGGCACACCA  948

seq1  GAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATA-TGGT  999
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  GAAGAGGGCATCAGATCTCATTACAGATGGGTGTGAGCCACCATATTGGT  998

seq1  TGCTGGGAATTGAACTCAGGACCTCTGGAAGAAC  1033
      |||||||||||||||||| ||||||| |||||||
seq2  TGCTGGGAATTGAACTCA-GACCTCTTGAAGAAC  1031

seq1: chr5_75488936_75488986
seq2: B6Ng01-029F17.g_295_345 (reverse)

seq1  CTCCCTTCCCAACTCCCTTTCCCATGCCCTAAATAAACTCTATTCCATAC  50
      |||||| | |||||||| ||||||||||||||||||||||| ||||||||
seq2  CTCCCTCCTCAACTCCCCTTCCCATGCCCTAAATAAACTCTGTTCCATAC  50

seq1  T  51
      |
seq2  T  51