BAC Information

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BAC

Clone NameB6Ng01-029F19
Chromosome5 (Build37)
Map Location 140,084,184 - 140,191,923
singlet/doubletdoublet
Overlap geneLOC100041217, Micall2
Upstream geneA430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209
Downstream geneInts1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291, EG231836, Chst12, Grifin, Lfng, Ttyh3, Iqce, AA881470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029F19.bB6Ng01-029F19.g
ACCDH859582DH859583
length912810
definitionDH859582|Mus musculus domesticus DNA, BAC clone: B6Ng01-029F19, 5' end.DH859583|Mus musculus domesticus DNA, BAC clone: B6Ng01-029F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,191,006 - 140,191,923)(140,084,184 - 140,084,919)
sequence
gaattccactaatagcagggtcaccacggtagtaaatgcccccaccagca
aggtccccactgtagtgagtgccacaaatggcagggtgcccactgtggtg
actgcccacactggtagggtccctgctgtgatgaatacctctgccagcaa
agtctctcctgttgtggatgcccctgcccaggagagcagccgggagcaag
cattaagtgtccttaggaaggcccttccggcgctgacaggatctggtacc
caggctccaaacaggtaggtgggagggatgtggatgtagctgcgacctgc
cccccaggtctgtctctctgtgaggccttcatctccttatctgggaattg
gaggtggggagcaggagagaggcaggaatgcagggcatggtggtcttaca
gacattggtggctgcaggtggtccacactagactggtgctcctgagccct
tttgcctgtcttgtggacaggaaaagagcagggaggcacacggcctggct
ccgtgccttggatgacttgtgtgaatggagctgggtcctgagggtccttt
gtgcctggcacactgaccatacggtgcagatagaaggggaacagtcatcc
ctcacaggaacatgtcctgtggcaggccacatgctccacctggcctccaa
gggagagtcctttcgctccctcaacatctggagtttcctggcatcccttg
gttggtggccacctctctccatctctgactcctttattgcatggagtcta
ccgtctctctcttctgttttttttctttgtagagagttggagatggaact
gacggcatctcacatgctaggaaaggactctaccactgagccactcccca
gtccttcactgggggatctaggaaggggcgctccactgagctcacttcag
cccttactgggg
gaattctctcagtaaatagttgtggtgtttgcttgtcaccttattgccgt
atgatttttttccccccaataaggaaacattagttcatcctggatggagg
cggagccaataagtaggccacaggaaaattccagccaggtccagccaggt
ccagccaggtgagccactgagtctgtcagggctccagagagaagcacaga
agactcaggaaacaccagcaagtcccagactagtgctctctctctgtctc
tctgtctctctctctctctgtctctctgactctctgtctctctgtctctc
tctgtctctgtctctctgtctctgtctctctgtctctgtctctctctgtc
cctctgtctctctctgtctctgtctctctgtctctgtctctctctgtctc
tctgtctctgtctctctcctcctctctctctctctctctctgtgtgtgtg
tgtgtgtgtgtgtgtggtttgaagatgcttggcccatgggaagtggcact
attaggaggtgtggccttgttggaatagatatggccttgttggaggaagt
gtgtcattgtgtaagcaagctttgagggctctcagtgccaatggagaaag
gaacctcctcctggctgcctgtggacagtagactcctggatgctttctga
tgaaagatgtagaactctcagctccatatctatctggatgctgccatgct
ttcagccatgatgatagtgggactgaaccagccctaattacatgttgtac
ttataagagttgccttggtcatggtgtctcttcacagcaatgaaacctaa
ctaaaaacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_140191006_140191923
seq2: B6Ng01-029F19.b_45_956 (reverse)

seq1  CCCCAGTGAGGGGCTGGAGTGTAGCTCAGTGGTAGAGCCCCTGCCTAGAA  50
      ||||||| | |||||| |||| |||||||||| || |||||| ||||| |
seq2  CCCCAGT-AAGGGCTGAAGTG-AGCTCAGTGG-AGCGCCCCTTCCTAG-A  46

seq1  TCCCCCAGTGAGGGGCTGGGGTGTGGCTCAGTGGTAGAGCCCTTGCCTAG  100
      ||||||||||| || |||||| ||||||||||||||||| |||| |||||
seq2  TCCCCCAGTGAAGGACTGGGGAGTGGCTCAGTGGTAGAGTCCTTTCCTAG  96

seq1  CATGTGAGATGCCCTCAGTTCCATCTCCAACTCTCTACAAAAGAAAAAAA  150
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  CATGTGAGATGCCGTCAGTTCCATCTCCAACTCTCTAC-AAAGAAAAAAA  145

seq1  GACAGAAGAGAGAGACGGTAGACTCCATGCAATAATGGAGTCAGAGATGG  200
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  -ACAGAAGAGAGAGACGGTAGACTCCATGCAATAAAGGAGTCAGAGATGG  194

seq1  AGAGAGGTGGCCACCAACCAAGGGATGCCAGGAAACTCCAGATGTTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGTGGCCACCAACCAAGGGATGCCAGGAAACTCCAGATGTTGAGG  244

seq1  GAGCGAAAGGACTCTCCCTTGGAGGCCAGGTGGAGCATGTGGCCTGCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGAAAGGACTCTCCCTTGGAGGCCAGGTGGAGCATGTGGCCTGCCAC  294

seq1  AGGACATGTTCCTGTGAGGGATGACTGTTCCCCTTCTATCTGCACCGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGTTCCTGTGAGGGATGACTGTTCCCCTTCTATCTGCACCGTAT  344

seq1  GGTCAGTGTGCCAGGCACAAAGGACCCTCAGGACCCAGCTCCATTCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTGTGCCAGGCACAAAGGACCCTCAGGACCCAGCTCCATTCACAC  394

seq1  AAGTCATCCAAGGCACGGAGCCAGGCCGTGTGCCTCCCTGCTCTTTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATCCAAGGCACGGAGCCAGGCCGTGTGCCTCCCTGCTCTTTTCCT  444

seq1  GTCCACAAGACAGGCAAAAGGGCTCAGGAGCACCAGTCTAGTGTGGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAAGACAGGCAAAAGGGCTCAGGAGCACCAGTCTAGTGTGGACCA  494

seq1  CCTGCAGCCACCAATGTCTGTAAGACCACCATGCCCTGCATTCCTGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGCCACCAATGTCTGTAAGACCACCATGCCCTGCATTCCTGCCTC  544

seq1  TCTCCTGCTCCCCACCTCCAATTCCCAGATAAGGAGATGAAGGCCTCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCTCCCCACCTCCAATTCCCAGATAAGGAGATGAAGGCCTCACA  594

seq1  GAGAGACAGACCTGGGGGGCAGGTCGCAGCTACATCCACATCCCTCCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGACCTGGGGGGCAGGTCGCAGCTACATCCACATCCCTCCCAC  644

seq1  CTACCTGTTTGGAGCCTGGGTACCAGATCCTGTCAGCGCCGGAAGGGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGTTTGGAGCCTGGGTACCAGATCCTGTCAGCGCCGGAAGGGCCT  694

seq1  TCCTAAGGACACTTAATGCTTGCTCCCGGCTGCTCTCCTGGGCAGGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGGACACTTAATGCTTGCTCCCGGCTGCTCTCCTGGGCAGGGGCA  744

seq1  TCCACAACAGGAGAGACTTTGCTGGCAGAGGTATTCATCACAGCAGGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAACAGGAGAGACTTTGCTGGCAGAGGTATTCATCACAGCAGGGAC  794

seq1  CCTACCAGTGTGGGCAGTCACCACAGTGGGCACCCTGCCATTTGTGGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAGTGTGGGCAGTCACCACAGTGGGCACCCTGCCATTTGTGGCAC  844

seq1  TCACTACAGTGGGGACCTTGCTGGTGGGGGCATTTACTACCGTGGTGACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACAGTGGGGACCTTGCTGGTGGGGGCATTTACTACCGTGGTGACC  894

seq1  CTGCTATTAGTGGAATTC  918
      ||||||||||||||||||
seq2  CTGCTATTAGTGGAATTC  912

seq1: chr5_140084184_140084919
seq2: B6Ng01-029F19.g_65_802

seq1  GAATTCTCTCAGTAAATAGTTGTGGTGTTTGCTTGTCACCTTATTGCCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGTAAATAGTTGTGGTGTTTGCTTGTCACCTTATTGCCGT  50

seq1  ATGATTTTTTTCCCCCCAATAAGGAAACATTAGTTCATCCTGGATGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTTTTCCCCCCAATAAGGAAACATTAGTTCATCCTGGATGGAGG  100

seq1  CGGAGCCAATAAGTAGGCCACAGGAAAATTCCAGCCAGGTCCAGCCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCCAATAAGTAGGCCACAGGAAAATTCCAGCCAGGTCCAGCCAGGT  150

seq1  CCAGCCAGGTGAGCCACTGAGTCTGTCAGGGCTCCAGAGAGAAGCACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGGTGAGCCACTGAGTCTGTCAGGGCTCCAGAGAGAAGCACAGA  200

seq1  AGACTCAGGAAACACCAGCAAGTCCCAGACTAGTGCTCTCTCTCTGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGGAAACACCAGCAAGTCCCAGACTAGTGCTCTCTCTCTGTCTC  250

seq1  TCTGTCTCTCTCTCTCTCTGTCTCTCTGACTCTCTGTCTCTCTGTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTCTCTCTCTCTGTCTCTCTGACTCTCTGTCTCTCTGTCTCTC  300

seq1  TCTGTCTCTGTCTCTCTGTCTCTGTCTCTCTGTCTCTGTCTCTCTCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTGTCTCTCTGTCTCTGTCTCTCTGTCTCTGTCTCTCTCTGTC  350

seq1  CCTCTGTCTCTCTCTGTCTCTGTCTCTCTGTCTCTGTCTCTCTCTGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCTCTCTCTGTCTCTGTCTCTCTGTCTCTGTCTCTCTCTGTCTC  400

seq1  TCTGTCTCTGTCTCTCTCCTCCTCTCTCTCTCTCTCTCTCTGTGTGTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTGTCTCTCTCCTCCTCTCTCTCTCTCTCTCTCTGTGTGTGTG  450

seq1  TGTGTGTGTGTGTGTGGTTTGAAGATGCTTGGCCCATGGGAAGTGGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGGTTTGAAGATGCTTGGCCCATGGGAAGTGGCACT  500

seq1  ATTAGGAGGTGTGGCCTTGTTGGAATAGATATGGCCTTGTTGGAGGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAGGTGTGGCCTTGTTGGAATAGATATGGCCTTGTTGGAGGAAGT  550

seq1  GTGTCATTGTGTAAGCAAGCTTTGAGGGCTCTCAGTGCCAATGGAGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATTGTGTAAGCAAGCTTTGAGGGCTCTCAGTGCCAATGGAGAAAG  600

seq1  GAACCTCCTCCTGGCTGCCTGTGGACAGTAGACTCCTGGATGCTTTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTCCTCCTGGCTGCCTGTGGACAGTAGACTCCTGGATGCTTTCTGA  650

seq1  TG-AAGATGTAGAACTCTCAGCTCCATATCTATCTGGATGCTGCCATGCT  699
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATGTAGAACTCTCAGCTCCATATCTATCTGGATGCTGCCATGCT  700

seq1  TCCAGCCATGATGATAGT-GGACTGAACCAGCCCTAAT  736
      | |||||||||||||||| |||||||||||||||||||
seq2  TTCAGCCATGATGATAGTGGGACTGAACCAGCCCTAAT  738