BAC Information

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BAC

Clone NameB6Ng01-029M01
Chromosome5 (Build37)
Map Location 20,277,025 - 20,420,678
singlet/doubletdoublet
Overlap genePhtf2, LOC622367, Tmem60, Rsbn1l
Upstream geneMagi2, LOC100041850
Downstream genePtpn12, EG626903, A530088I07Rik, Fgl2, AI847670, Fbxl13, LOC625004, LOC667253, Armc10, AB112350, Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029M01.bB6Ng01-029M01.g
ACCDH859862DH859863
length1,1311,098
definitionDH859862|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M01, 5' end.DH859863|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,419,539 - 20,420,678)(20,277,025 - 20,278,135)
sequence
gaattccttaagtatgtcaaagtgaagcccttgttttcacctcgtgtggt
cctgtggccccacagctcaggcggtatatctgaaggagagtgtggtaagt
ctctgcactgatctgtattctagcattgtttacgatagctgagaaaggat
agagaaatacagacgtgctataaatgaagtctgtcatttactaaagcatt
acattcagtgaaataagtcaggcagatcggccccacaggcctcttgcctg
gaacctaaaaagttattctcagaagctgagtgtagaaagaatggtggtga
gcagtggtaagaatactggacaaggaatgtggtaagggtcagtcagagag
aacgttacagttggctagggttaagaagaacttgcatggggctggagaga
tgatggctcagcagttaagacttctggctgcttttccagaggtcccaagt
tcaattcccagcaatcacatggtggcttctaatcacctataatgtgatct
gatgctctcttctagcatgggggtgtatatgcagatagagcactcatata
tataaaataaagtgcttgcacatatctaatctattagaggcaggtatcag
aggctgtaattgggaaagtatatttttctgtcattaattaaaaagtgaat
tttattgaacttatggctattttaaaaatataatgaataaagtggctgag
gagctgtcttaggccttaaggcgcttgctgtgtaagcgtgaggacctgag
ctctgtctctcgcaaccatggtggcagcacactcctgtaattgtagtcct
ggggacgggcgcggagacaggaggatcctgagcagttagcaagccagtct
ggccagattgaaaagtccagcttctgtgacaggtaaagaatgattatgac
tgagtagacccctcctccctccgccacttttctatcattcgttaccattc
ttctgtttgaaagtatgtgctaaatatggcatggatggctccccttgtgc
actttcctttatgtcatggaggtagattgcatcagtaagatgtgatgaca
gggagaaagcagtaagcgttcttagttagggtttctatgctgtaaagaga
gacccgtgaggcaggcaacctttaaaaggac
gaattcatatattaagaatattcacatagacatgaatatatatagtatat
ataagcactactggtgttttaaagcaggaataatatgtcacatctgaggt
gaacttctacactgtctttcatagcacagactgtgcttgtaaaacacatg
accactgagaattctttcacaaagctgtagcagtttactctgatttaaga
gtaatggttcatggagaagaaactttttaaattaatattagatgtgagga
attgatggctggtgtaattttgtcactacagaatataggagataagaata
aatacatagtgattgtagataaaaagtattcagtgtctgttaataggcat
gcctattagttaagatacagagaaaaataagatgcaatttcttattctac
agaaaagttataaaacatctgtttcaaagtttgtctagggcctggggtgg
caattcagtggttaagagcatttactgctcttaaaaggagacaggggccg
ggcgtggtggcgcacacctttaatcccagcacttgggaggcagaggcagg
tggatttctgagtttgaggtcagcctggtctacaaagtgagttccaggac
agccaggactacacagagaaaccctgtctcaaaaaaccaaaaaaaaaaaa
aaaaaaaaaaaaaaaaacaaaccaaaaaggaaaaggagacaggttttgtt
cccaacacctacaagactgacagatgtctgtaacttagttccaagggatg
tgatgccctcttctgacctccatgggcaccagaataagaaggacacagaa
gacatgaaaaaatgagagattggggttacaggagagggcttcctatggga
gtttcattatagggaatgagagacaagggggagagagtttcaagactcac
tcactcaagacgcaatgatactgatgcctaggactgtctccacgtagcac
gctgacttactgtgcacagcagataaacacactgaaattgtcagtaagaa
ggccgatgaaacaatgacattaaggatcgctgaaggcctccgcgcttgca
ggggaaaggaaacactctttaatttatttactaaacgcatgatgacgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_20419539_20420678
seq2: B6Ng01-029M01.b_41_1171 (reverse)

seq1  GTCCTTTATAAGAGTTGCCTTGCTCAC-GGTGTCTCTTTACAGCAATAG-  48
      ||||||| |||  |||||||  ||||| ||| |||||||||||| |||| 
seq2  GTCCTTT-TAAAGGTTGCCTGCCTCACGGGTCTCTCTTTACAGC-ATAGA  48

seq1  AACCCTAACTAAG-ACGCTTTACCTGCTATCTCCCTGGTCATCACATTCT  97
      ||||||||||||| ||||||   ||||| ||||||| ||||||||| |||
seq2  AACCCTAACTAAGAACGCTT--ACTGCTTTCTCCCT-GTCATCACA-TCT  94

seq1  TACTGATGCAATCTAACCTCCATGGACATAAAGGAAAGTGCCACAAGGGG  147
      |||||||||||||| |||||||| |||||||||||||||| ||||| |||
seq2  TACTGATGCAATCT-ACCTCCAT-GACATAAAGGAAAGTG-CACAA-GGG  140

seq1  GAGCCATTCCATGCCATATTTAGCACATACTTTCAAACAGAAGAATGGTA  197
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCA-TCCATGCCATATTTAGCACATACTTTCAAACAGAAGAATGGTA  189

seq1  ACGAATGATAGAAAAGTGGCGGAGGGAGGAGGGGTCTACCTCAGTCATAA  247
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACGAATGATAGAAAAGTGGCGGAGGGAGGAGGGGTCTA-CTCAGTCATAA  238

seq1  TCATTCTTTACCTGTCACAGAAGCTGGACTTTTCAATCTGGCCAGACTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTTACCTGTCACAGAAGCTGGACTTTTCAATCTGGCCAGACTGG  288

seq1  CTTGCTAACTGCTCAGGATCCTCCTGTCTCCGCGCCCGTCCCCAGGACTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTAACTGCTCAGGATCCTCCTGTCTCCGCGCCCGTCCCCAGGACTA  338

seq1  CAATTACAGGAGTGTGCTGCCACCATGGTTGCGAGAGACAGAGCTCAGGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTACAGGAGTGTGCTGCCACCATGGTTGCGAGAGACAGAGCTCAGGT  388

seq1  CCTCACGCTTACACAGCAAGCGCCTTAAGGCCTAAGACAGCTCCTCAGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACGCTTACACAGCAAGCGCCTTAAGGCCTAAGACAGCTCCTCAGCC  438

seq1  ACTTTATTCATTATATTTTTAAAATAGCCATAAGTTCAATAAAATTCACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTCATTATATTTTTAAAATAGCCATAAGTTCAATAAAATTCACT  488

seq1  TTTTAATTAATGACAGAAAAATATACTTTCCCAATTACAGCCTCTGATAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTAATGACAGAAAAATATACTTTCCCAATTACAGCCTCTGATAC  538

seq1  CTGCCTCTAATAGATTAGATATGTGCAAGCACTTTATTTTATATATATGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTAATAGATTAGATATGTGCAAGCACTTTATTTTATATATATGA  588

seq1  GTGCTCTATCTGCATATACACCCCCATGCTAGAAGAGAGCATCAGATCAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTATCTGCATATACACCCCCATGCTAGAAGAGAGCATCAGATCAC  638

seq1  ATTATAGGTGATTAGAAGCCACCATGTGATTGCTGGGAATTGAACTTGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGGTGATTAGAAGCCACCATGTGATTGCTGGGAATTGAACTTGGG  688

seq1  ACCTCTGGAAAAGCAGCCAGAAGTCTTAACTGCTGAGCCATCATCTCTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGGAAAAGCAGCCAGAAGTCTTAACTGCTGAGCCATCATCTCTCC  738

seq1  AGCCCCATGCAAGTTCTTCTTAACCCTAGCCAACTGTAACGTTCTCTCTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCATGCAAGTTCTTCTTAACCCTAGCCAACTGTAACGTTCTCTCTG  788

seq1  ACTGACCCTTACCACATTCCTTGTCCAGTATTCTTACCACTGCTCACCAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCCTTACCACATTCCTTGTCCAGTATTCTTACCACTGCTCACCAC  838

seq1  CATTCTTTCTACACTCAGCTTCTGAGAATAACTTTTTAGGTTCCAGGCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTCTACACTCAGCTTCTGAGAATAACTTTTTAGGTTCCAGGCAA  888

seq1  GAGGCCTGTGGGGCCGATCTGCCTGACTTATTTCACTGAATGTAATGCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTGTGGGGCCGATCTGCCTGACTTATTTCACTGAATGTAATGCTT  938

seq1  TAGTAAATGACAGACTTCATTTATAGCACGTCTGTATTTCTCTATCCTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATGACAGACTTCATTTATAGCACGTCTGTATTTCTCTATCCTTT  988

seq1  CTCAGCTATCGTAAACAATGCTAGAATACAGATCAGTGCAGAGACTTACC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTATCGTAAACAATGCTAGAATACAGATCAGTGCAGAGACTTACC  1038

seq1  ACACTCTCCTTCAGATATACCGCCTGAGCTGTGGGGCCACAGGACCACAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTCCTTCAGATATACCGCCTGAGCTGTGGGGCCACAGGACCACAC  1088

seq1  GAGGTGAAAACAAGGGCTTCACTTTGACATACTTAAGGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAAAACAAGGGCTTCACTTTGACATACTTAAGGAATTC  1131

seq1: chr5_20277025_20278135
seq2: B6Ng01-029M01.g_67_1164

seq1  GAATTCATATATTAAGAATATTCACATAGACATGAATATATATAGTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATATTAAGAATATTCACATAGACATGAATATATATAGTATAT  50

seq1  ATAAGCACTACTGGTGTTTTAAAGCAGGAATAATATGTCACATCTGAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCACTACTGGTGTTTTAAAGCAGGAATAATATGTCACATCTGAGGT  100

seq1  GAACTTCTACACTGTCTTTCATAGCACAGACTGTGCTTGTAAAACACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCTACACTGTCTTTCATAGCACAGACTGTGCTTGTAAAACACATG  150

seq1  ACCACTGAGAATTCTTTCACAAAGCTGTAGCAGTTTACTCTGATTTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAGAATTCTTTCACAAAGCTGTAGCAGTTTACTCTGATTTAAGA  200

seq1  GTAATGGTTCATGGAGAAGAAACTTTTTAAATTAATATTAGATGTGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGTTCATGGAGAAGAAACTTTTTAAATTAATATTAGATGTGAGGA  250

seq1  ATTGATGGCTGGTGTAATTTTGTCACTACAGAATATAGGAGATAAGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGGCTGGTGTAATTTTGTCACTACAGAATATAGGAGATAAGAATA  300

seq1  AATACATAGTGATTGTAGATAAAAAGTATTCAGTGTCTGTTAATAGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATAGTGATTGTAGATAAAAAGTATTCAGTGTCTGTTAATAGGCAT  350

seq1  GCCTATTAGTTAAGATACAGAGAAAAATAAGATGCAATTTCTTATTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTAGTTAAGATACAGAGAAAAATAAGATGCAATTTCTTATTCTAC  400

seq1  AGAAAAGTTATAAAACATCTGTTTCAAAGTTTGTCTAGGGCCTGGGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTTATAAAACATCTGTTTCAAAGTTTGTCTAGGGCCTGGGGTGG  450

seq1  CAATTCAGTGGTTAAGAGCATTTACTGCTCTTAAAAGGAGACAGGGGCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAGTGGTTAAGAGCATTTACTGCTCTTAAAAGGAGACAGGGGCCG  500

seq1  GGCGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGTGGCGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  550

seq1  TGGATTTCTGAGTTTGAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCTGAGTTTGAGGTCAGCCTGGTCTACAAAGTGAGTTCCAGGAC  600

seq1  AGCCAGGACTACACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGACTACACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAA  650

seq1  AAAAAAAAAAAAAAAAACAAACCAAAAAGGAAAAGGAGACAGGTTTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAACAAACCAAAAAGGAAAAGGAGACAGGTTTTGTT  700

seq1  CCCAACACCTACAAGACTGACAGATGTCTGTAACTTAGTTCCAAGGGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACACCTACAAGACTGACAGATGTCTGTAACTTAGTTCCAAGGGATG  750

seq1  TGATGCCCTCTTCTGACCTCCATGGGCACCAGAATAAGAAGGACACAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCCTCTTCTGACCTCCATGGGCACCAGAATAAGAAGGACACAGAA  800

seq1  GACATGAAAAAAATGAGAGATTGGGGTTGACAGGAGAGGGCTTCCTATGG  850
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  GACATG-AAAAAATGAGAGATTGGGGTT-ACAGGAGAGGGCTTCCTATGG  848

seq1  GAG-TTCATTAGTAGGGCAATGAGGAGACAAGGGGGAGAAGAGTATCAAG  899
      ||| ||||||| ||||| ||||| |||||||||||||| ||||| |||||
seq2  GAGTTTCATTA-TAGGG-AATGA-GAGACAAGGGGGAG-AGAGTTTCAAG  894

seq1  ACTCACTCACTCTAAGACGCAATGATACCTGATGCCTAGGAACTGTCTCC  949
      |||||||||||| |||||||||||||| |||||||||||| |||||||||
seq2  ACTCACTCACTC-AAGACGCAATGATA-CTGATGCCTAGG-ACTGTCTCC  941

seq1  ACGTAGCACGCTGACTTACCTGTGCACAGCAGATAAACACAACTGAGATT  999
      |||||||||||||||||| ||||||||||||||||||||| ||||| |||
seq2  ACGTAGCACGCTGACTTA-CTGTGCACAGCAGATAAACAC-ACTGAAATT  989

seq1  GTCAGTAAGAAGGCCGATGAGACAATGACATCCACAGATCGCTGAGGGCC  1049
      |||||||||||||||||||| ||||||||||  |  ||||||||| ||||
seq2  GTCAGTAAGAAGGCCGATGAAACAATGACAT-TAAGGATCGCTGAAGGCC  1038

seq1  TCGGCGCTAGCAGGGGGAAGGGAAAACACCTTTAAATATATTTACTAAAC  1099
      || ||||| ||||||| ||||  ||||||  || ||| ||||||||||||
seq2  TCCGCGCTTGCAGGGGAAAGG--AAACACTCTTTAATTTATTTACTAAAC  1086

seq1  AGCA-GATGACGC  1111
       ||| ||||||||
seq2  -GCATGATGACGC  1098