BAC Information

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BAC

Clone NameB6Ng01-030A24
Chromosome5 (Build37)
Map Location 113,210,143 - 113,390,244
singlet/doubletdoublet
Overlap geneMyo18b, Adrbk2
Upstream geneA230057G18Rik, Cryba4, Crybb1, Tpst2, Tfip11, 2810002G02Rik, Hps4, EG625424, Asphd2, Sez6l, EG625464
Downstream geneCrybb2, LOC100042920, Crybb3, 2900026A02Rik, Gm854, Rutbc2, Aym1, C530024P05Rik, Cmklr1, LOC381707, D5Ertd40e, Sart3, LOC100041786, Iscu, Tmem119, Selplg, Coro1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030A24.bB6Ng01-030A24.g
ACCDH860079DH860080
length442887
definitionDH860079|Mus musculus domesticus DNA, BAC clone: B6Ng01-030A24, 5' end.DH860080|Mus musculus domesticus DNA, BAC clone: B6Ng01-030A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,210,143 - 113,210,590)(113,389,335 - 113,390,244)
sequence
agtaagagcttgaaggcagacaccatggaggaatgctgcttgctgactcc
ctcagactcatgatttgctagcttctttataaagctgagactacctgcct
agggtatggtgccgcccatagtgggccaagccctcctacattaattgact
tctccacatgcatgtccacagcccaacctagtcttggtaatccttcaact
gtgactcattactaaggtgacttgctcctgtgttagatggttaaagctat
ttaggacactgcaatttattgaaagctagccagcaggaccagattgtgca
ggagcaaagaggagcatgaagccagtagaatggggatctgtccccaccca
cggcatgagggatggtggtgggggaaaaagggaaaacataggtatctatt
tcataccacacacctacgtaagatggattaaaatctatttat
gaattcatctccctgggtttccaggctgcagagtagtgtgtcatctgata
ctctgaaattggtcagctccccttgagctgtttatgcatgtgtctccaag
tcagtttgcacgcagggctccaagcctctgagagcagccccctgtgtgtg
ttccacttgactgcgtgggttgtggttcaactagaatggagagatagttt
atcctggaatgcagtcagcatcttggggactgactgacattcatatatgt
gatcctggggccagcagaaagctctggaaagaggctcagtgaagccaggg
aggaatgctggctcagtgctgagactcggcctcatccagggccagcccca
ctgcctagatttctcaaatctggcttgcacctcagagtccatgttagtct
tgtgtgactgggttctacttgttccatgccttgagcctggtctgtcttta
cctcaagagttggtgacccttcatcatgggatgctagaggtgtgacttgc
tttgtaggtaacacacacatacacacaaacacacacccacacacacccta
gggtatgaaaacagttcaagttataggtaagtaaattactttgaaaatca
atttgcattgcaacattttagttggaattctcaaagtaaaaggagaaaga
aacaaagaaacaaaaaagaaagaaagaaaagaaagaagaaagaaagaaag
aagaagaagaaagaagaagaaagaaagaaaggaaggataaggaaggaaga
aggaaggaaggaggagaagatagaagaaagaagaaggaagaagaaggaag
aaagaagggcttgctgagtgtggagctgggtttgaaagcttgacatcacc
gagctgtgcaggcaggggggtgggcactaaggcttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_113210143_113210590
seq2: B6Ng01-030A24.b_47_494

seq1  GAATTCAGTAAGAGCTTGAAGGCAGACACCATGGAGGAATGCTGCTTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAGAGCTTGAAGGCAGACACCATGGAGGAATGCTGCTTGCT  50

seq1  GACTCCCTCAGACTCATGATTTGCTAGCTTCTTTATAAAGCTGAGACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCCTCAGACTCATGATTTGCTAGCTTCTTTATAAAGCTGAGACTAC  100

seq1  CTGCCTAGGGTATGGTGCCGCCCATAGTGGGCCAAGCCCTCCTACATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAGGGTATGGTGCCGCCCATAGTGGGCCAAGCCCTCCTACATTAA  150

seq1  TTGACTTCTCCACATGCATGTCCACAGCCCAACCTAGTCTTGGTAATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTCTCCACATGCATGTCCACAGCCCAACCTAGTCTTGGTAATCCT  200

seq1  TCAACTGTGACTCATTACTAAGGTGACTTGCTCCTGTGTTAGATGGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGTGACTCATTACTAAGGTGACTTGCTCCTGTGTTAGATGGTTAA  250

seq1  AGCTATTTAGGACACTGCAATTTATTGAAAGCTAGCCAGCAGGACCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTTAGGACACTGCAATTTATTGAAAGCTAGCCAGCAGGACCAGAT  300

seq1  TGTGCAGGAGCAAAGAGGAGCATGAAGCCAGTAGAATGGGGATCTGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGGAGCAAAGAGGAGCATGAAGCCAGTAGAATGGGGATCTGTCCC  350

seq1  CACCCACGGCATGAGGGATGGTGGTGGGGGAAAAAGGGAAAACATAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACGGCATGAGGGATGGTGGTGGGGGAAAAAGGGAAAACATAGGTA  400

seq1  TCTATTTCATACCACACACCTACGTAAGATGGATTAAAATCTAATTAT  448
      ||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTATTTCATACCACACACCTACGTAAGATGGATTAAAATCTATTTAT  448

seq1: chr5_113389335_113390244
seq2: B6Ng01-030A24.g_64_950 (reverse)

seq1  TCAAGCCTTTAGTGCCCCACCCACCTGCCTGCACAGCTCTGGTGATGTTC  50
      ||||||| |||||| ||||||| |||||||||||||||| ||||||| ||
seq2  TCAAGCC-TTAGTG-CCCACCCCCCTGCCTGCACAGCTC-GGTGATG-TC  46

seq1  AAGGCTTTCCAAACCCAAGCTCCACACTCAGCAAGCCTTTCTTTCTTTCT  100
      || ||||| ||||||| |||||||||||||||||||| ||||||||| ||
seq2  AA-GCTTT-CAAACCC-AGCTCCACACTCAGCAAGCCCTTCTTTCTTCCT  93

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTC-CTTCCTTCCTT  149
      |       ||||| |||   ||||||| |||| ||||| | |||||||||
seq2  T------CTTCTTCCTT--CTTCTTTC-TTCTATCTTCTCCTCCTTCCTT  134

seq1  CCTTCCTTCCTTCCCTTATCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCT  199
      |||| ||||||| ||||||||||||||||||||||||||   ||||||| 
seq2  CCTT-CTTCCTT-CCTTATCCTTCCTTTCTTTCTTTCTT--CTTCTTTC-  179

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTCTTTCTTTCTTTTTT  249
      |||||   ||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCTT--CTTCTTTCTTTCTTTC-TTCTTTCTTTTCTTTCTTTCTTTTTT  226

seq1  GTTTCTTTGTTTCTTTCTCCTTTTACTTTGAGAATTCCAACTAAAATGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGTTTCTTTCTCCTTTTACTTTGAGAATTCCAACTAAAATGTT  276

seq1  GCAATGCAAATTGATTTTCAAAGTAATTTACTTACCTATAACTTGAACTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGCAAATTGATTTTCAAAGTAATTTACTTACCTATAACTTGAACTG  326

seq1  TTTTCATACCCTAGGGTGTGTGTGGGTGTGTGTTTGTGTGTATGTGTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATACCCTAGGGTGTGTGTGGGTGTGTGTTTGTGTGTATGTGTGTG  376

seq1  TTACCTACAAAGCAAGTCACACCTCTAGCATCCCATGATGAAGGGTCACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTACAAAGCAAGTCACACCTCTAGCATCCCATGATGAAGGGTCACC  426

seq1  AACTCTTGAGGTAAAGACAGACCAGGCTCAAGGCATGGAACAAGTAGAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTGAGGTAAAGACAGACCAGGCTCAAGGCATGGAACAAGTAGAAC  476

seq1  CCAGTCACACAAGACTAACATGGACTCTGAGGTGCAAGCCAGATTTGAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCACACAAGACTAACATGGACTCTGAGGTGCAAGCCAGATTTGAGA  526

seq1  AATCTAGGCAGTGGGGCTGGCCCTGGATGAGGCCGAGTCTCAGCACTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGGCAGTGGGGCTGGCCCTGGATGAGGCCGAGTCTCAGCACTGAG  576

seq1  CCAGCATTCCTCCCTGGCTTCACTGAGCCTCTTTCCAGAGCTTTCTGCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTCCTCCCTGGCTTCACTGAGCCTCTTTCCAGAGCTTTCTGCTG  626

seq1  GCCCCAGGATCACATATATGAATGTCAGTCAGTCCCCAAGATGCTGACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGATCACATATATGAATGTCAGTCAGTCCCCAAGATGCTGACTG  676

seq1  CATTCCAGGATAAACTATCTCTCCATTCTAGTTGAACCACAACCCACGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAGGATAAACTATCTCTCCATTCTAGTTGAACCACAACCCACGCA  726

seq1  GTCAAGTGGAACACACACAGGGGGCTGCTCTCAGAGGCTTGGAGCCCTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTGGAACACACACAGGGGGCTGCTCTCAGAGGCTTGGAGCCCTGC  776

seq1  GTGCAAACTGACTTGGAGACACATGCATAAACAGCTCAAGGGGAGCTGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAACTGACTTGGAGACACATGCATAAACAGCTCAAGGGGAGCTGAC  826

seq1  CAATTTCAGAGTATCAGATGACACACTACTCTGCAGCCTGGAAACCCAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCAGAGTATCAGATGACACACTACTCTGCAGCCTGGAAACCCAGG  876

seq1  GAGATGAATTC  910
      |||||||||||
seq2  GAGATGAATTC  887