BAC Information

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BAC

Clone NameB6Ng01-030D22
Chromosome5 (Build37)
Map Location 121,496,753 - 121,617,498
singlet/doubletdoublet
Overlap geneLOC665299, Ptpn11
Upstream geneRbm19, LOC100039609, Lhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a
Downstream geneRpl6, LOC100039686, EG545802, AU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030D22.bB6Ng01-030D22.g
ACCDH860210DH860211
length923548
definitionDH860210|Mus musculus domesticus DNA, BAC clone: B6Ng01-030D22, 5' end.DH860211|Mus musculus domesticus DNA, BAC clone: B6Ng01-030D22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,496,753 - 121,497,674)(121,616,945 - 121,617,498)
sequence
gaattctgtgcttcattgaagccctggtagggccctcgggtaaagtttga
tcaaccaataaaaccatatcaagattttacaatctttgttgtttgtttgt
tgtttgtttgtttgtttgtttgtttgtttgtttgtttgaaacaaggacct
actacacagttctggctgtcctggaactcactacctctgcctctgagtgc
caggattaaaggcacacaccactgcaggcagctaagattctatctataat
ctctaaacattagccttacttcttgcctatttgactcgatgtaataagtg
ctcccaatatcttggggatacatatatatatatatatatatatatatata
tatatatatatatatatatacacatatatatatatttccatatatatttc
catatatatccatatatatatatatccatatatatgaatgattcaattta
gctgcatagtaatagaagccaaagcacttaggactcaaactagacagaga
ttaggtatctctcgaggggcaagtgagtccagagctgggtcagctcccag
acagtcaccggtaacctaaccttctacctttcttctttgccaactttagc
atgtgacttttcatccttaataatacctcctgatcacaaaatggctgctg
gagtgccaaccatagcattacattttatacaggaaaacagcagagaatat
ataaaaggctcctgtgcaccaatcgggtcagtctccctttcaatgtttca
caagaggacaccatctagtgtatccatctacatttctccgatttcttttg
tccacaatgaacgcaggaagtgcaaactacttggctcacacaatacagag
acccagtagtgattgagatgcttagtcgactacagggtcagccactagca
atatttctgcagtgttctgtaga
ctgtccctgcctttacccgctgagttagcactagggttacaggcatgctt
cgccatgtctggcttacgtggtcctagagattgaacataggcttggtgca
tgctagcaaagcactctatatactgagctacatgccctgcctgcagtgtc
agagtatcggcagaataccctcattgcagcagctgcagttagtgttcctt
acacagattctatagggctcctacgttttctccaggtagatttagaatgt
gctttaattgtaacctttatcaacagctgatgagctttgggagttggggc
agagaatacggagcttgagatgccgaaatagcagcagtgctgcaaggtgc
tctgaccagttatttagcaacagtaccatcagaggtcaggctaagcccag
aagtggaaaagcagagtcctgaaggaccagcttttcatcagcttttagca
ttctctcccaaatgtgtagcacatccgtgtctgtagagaaagaactgcca
tgttgtgaagttcttcctatgtgcgctgcggggtgggagggtggtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_121496753_121497674
seq2: B6Ng01-030D22.b_45_967

seq1  GAATTCTGTGCTTCATTGAAGCCCTGGTAGGGCCCTCGGGTAAAGTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCTTCATTGAAGCCCTGGTAGGGCCCTCGGGTAAAGTTTGA  50

seq1  TCAACCAATAAAACCATATCAAGATTTTACAATCTTTGTTGTTTGTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAATAAAACCATATCAAGATTTTACAATCTTTGTTGTTTGTTTGT  100

seq1  TGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGAAACAAGGACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGAAACAAGGACCT  150

seq1  ACTACACAGTTCTGGCTGTCCTGGAACTCACTACCTCTGCCTCTGAGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACAGTTCTGGCTGTCCTGGAACTCACTACCTCTGCCTCTGAGTGC  200

seq1  CAGGATTAAAGGCACACACCACTGCAGGCAGCTAAGATTCTATCTATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTAAAGGCACACACCACTGCAGGCAGCTAAGATTCTATCTATAAT  250

seq1  CTCTAAACATTAGCCTTACTTCTTGCCTATTTGACTCGATGTAATAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAACATTAGCCTTACTTCTTGCCTATTTGACTCGATGTAATAAGTG  300

seq1  CTCCCAATATCTTGGGGATAC--ATATATATATATATATATATATATATA  348
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  CTCCCAATATCTTGGGGATACATATATATATATATATATATATATATATA  350

seq1  TATATATATATATATATATACACACATATATATATTTCCATATATATTTC  398
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATATATATATATATATATACACATATATATATATTTCCATATATATTTC  400

seq1  CATATATATCCATATATATATATATCCATATATATGAATGATTCAATTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATCCATATATATATATATCCATATATATGAATGATTCAATTTA  450

seq1  GCTGCATAGTAATAGAAGCCAAAGCACTTAGGACTCAAACTAGACAGAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATAGTAATAGAAGCCAAAGCACTTAGGACTCAAACTAGACAGAGA  500

seq1  TTAGGTATCTCTC-AAGGGCAAGTGAGTCCAGAGCTGGGTCAGCTCCCAG  547
      ||||||||||||| | ||||||||||||||||||||||||||||||||||
seq2  TTAGGTATCTCTCGAGGGGCAAGTGAGTCCAGAGCTGGGTCAGCTCCCAG  550

seq1  ACAGTCACCGGTAACCTAACCTTCTACCTTTCTTCTTTGCCAACTTTAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACCGGTAACCTAACCTTCTACCTTTCTTCTTTGCCAACTTTAGC  600

seq1  ATGTGAC-TTTCATCCTTAATAATACCTCCTGATCACAAAATGGCTGCTG  646
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACTTTTCATCCTTAATAATACCTCCTGATCACAAAATGGCTGCTG  650

seq1  GAGTGCCAACCATAGCATTACATTTTATACAGGAAAAACAGCAGAGAATA  696
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAGTGCCAACCATAGCATTACATTTTATACAGG-AAAACAGCAGAGAATA  699

seq1  TACAAAAGGCTCCTGTGCACCAATCGGTTCAGTCTCCCTTCAAATGTTTC  746
      || |||||||||||||||||||||||| ||||||||||||  ||||||||
seq2  TATAAAAGGCTCCTGTGCACCAATCGGGTCAGTCTCCCTTTCAATGTTTC  749

seq1  ACAAGA-GACACCATCTAGTGTATCCATCTACATTTCTCCGATTCCTTTT  795
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  ACAAGAGGACACCATCTAGTGTATCCATCTACATTTCTCCGATTTCTTTT  799

seq1  GTCCACAAATGAAGGCAGGAAGTGCAAACTACTTGGCTCACAACAATACA  845
      |||||| |||||| ||||||||||||||||||||||||||| ||||||||
seq2  GTCCAC-AATGAACGCAGGAAGTGCAAACTACTTGGCTCAC-ACAATACA  847

seq1  GAGACCCAGTAGTGATTGAGATGCTTAGTCGACTACAGGGTCAGCCACTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCAGTAGTGATTGAGATGCTTAGTCGACTACAGGGTCAGCCACTA  897

seq1  GCAAAGTTTTCTGCAGTGTTCTGTAGA  922
      || ||  ||||||||||||||||||||
seq2  GC-AATATTTCTGCAGTGTTCTGTAGA  923

seq1: chr5_121616945_121617498
seq2: B6Ng01-030D22.g_67_620 (reverse)

seq1  ACCACCACCCTCCCACCCCGCAGCGCACATAGGAAGAACTTCACAACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACCCTCCCACCCCGCAGCGCACATAGGAAGAACTTCACAACATG  50

seq1  GCAGTTCTTTCTCTACAGACACGGATGTGCTACACATTTGGGAGAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCTTTCTCTACAGACACGGATGTGCTACACATTTGGGAGAGAATG  100

seq1  CTAAAAGCTGATGAAAAGCTGGTCCTTCAGGACTCTGCTTTTCCACTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGCTGATGAAAAGCTGGTCCTTCAGGACTCTGCTTTTCCACTTCT  150

seq1  GGGCTTAGCCTGACCTCTGATGGTACTGTTGCTAAATAACTGGTCAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTAGCCTGACCTCTGATGGTACTGTTGCTAAATAACTGGTCAGAGC  200

seq1  ACCTTGCAGCACTGCTGCTATTTCGGCATCTCAAGCTCCGTATTCTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCAGCACTGCTGCTATTTCGGCATCTCAAGCTCCGTATTCTCTGC  250

seq1  CCCAACTCCCAAAGCTCATCAGCTGTTGATAAAGGTTACAATTAAAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTCCCAAAGCTCATCAGCTGTTGATAAAGGTTACAATTAAAGCAC  300

seq1  ATTCTAAATCTACCTGGAGAAAACGTAGGAGCCCTATAGAATCTGTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAATCTACCTGGAGAAAACGTAGGAGCCCTATAGAATCTGTGTAA  350

seq1  GGAACACTAACTGCAGCTGCTGCAATGAGGGTATTCTGCCGATACTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACTAACTGCAGCTGCTGCAATGAGGGTATTCTGCCGATACTCTGA  400

seq1  CACTGCAGGCAGGGCATGTAGCTCAGTATATAGAGTGCTTTGCTAGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGGCAGGGCATGTAGCTCAGTATATAGAGTGCTTTGCTAGCATG  450

seq1  CACCAAGCCTATGTTCAATCTCTAGGACCACGTAAGCCAGACATGGCGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGCCTATGTTCAATCTCTAGGACCACGTAAGCCAGACATGGCGAA  500

seq1  GCATGCCTGTAACCCTAGTGCTAACTCAGCGGGTAAAGGCAGGGACAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCTGTAACCCTAGTGCTAACTCAGCGGGTAAAGGCAGGGACAGGA  550

seq1  ATTC  554
      ||||
seq2  ATTC  554