BAC Information

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BAC

Clone NameB6Ng01-030I17
Chromosome5 (Build37)
Map Location 79,554,281 - 79,700,338
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030I17.bB6Ng01-030I17.g
ACCDH860417DH860418
length1,131955
definitionDH860417|Mus musculus domesticus DNA, BAC clone: B6Ng01-030I17, 5' end.DH860418|Mus musculus domesticus DNA, BAC clone: B6Ng01-030I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,554,281 - 79,555,414)(79,699,776 - 79,700,338)
sequence
gaattcactattcttgaagtagaatattcttggataatcaaaataggata
atcttccaagattgtaaagtaggacaaaagcaatattagaacctggtttg
cagttacagtgtacttcatgatgatgagaagagactagggagatagaaca
gagaattaggcctgatgtatcaatatttctcaagatagctactaggtgaa
agtccatatgctgaggtacagatacaagtcatatgtaatgaaacatcctt
gccattatgttacatgaaagtcttaaggactttggacaacgttgaagaaa
cttggaaaagacttgaaccatttacatagattatacaaggtccaaaagaa
acattcagtgactttttacaaatatcgagtgcagatataatagaaaggta
ttaatccattagctaggaaagtacttatcaaatctttgactttcaaaatg
gtagatactgaatgcaagaaggtaatcagacccataaaggcaggattatc
acctagagatgaaaatttcagaatatcttgaaatcaatttactaaaaggg
ggggtgcaatcctgcctgtgattgttgagacactatcagtagtatttcgt
tgggcacaagatatggaatgataacattaaggcctttgtaatttttcatt
tcagtactgagataaacagcaaatacagccatcaggtagggaaagggaga
ataataaacttgaaccctttgcattttgtctcctcctcctatttctcctc
ctcctcttcctcctcttcttttttcttttataggttttatacaaagatgt
aacaatagcctacttagctagacttaaaaattgaacttgtaaagtcaaaa
ttgccataaattatttcatctgcttttctgtttaccttaaaagtatttat
atatttattttcttctttgtaacaaattaatacatggattagggctgaat
agcatttatttttttcctttaaaaacatgggatatcacacaggattgatt
accatagaagtccagtgtaatgcacctaaatcctgatgcagaaattactg
aaaaggatgtgctaatgattgcgtgcccgaacaatgccactctattcata
cctaatgaaggtgaaactacttgttcttcat
gaattctgacaaagctaagccttcgccagtgttctaatgtcctggttcct
gtaagtctctttgtagtcattcctttgttttgtgtcaggtaacttcaatg
tactttgcctgctgtgacttcctaccccttttattttctgtactatataa
gactggtgttcactttgtgacaatacattcagattttacacaggttccag
tgttgatctgtctgtcattcgccgactccttgcccacctgcgactagaga
ccctttccacacaagggacccagagggtctgtggcagaatgatggtcatc
ttaattagggtttttattgctatgatgaaacatcaagacaaaaacctgct
tgaataggaatgtgttaattttgcttatatttccacataactgtccctca
gaaaagaagtaggcataagaactcaagagggctggaatctgggagcagga
gctaatacagaggccatcaagggatactgcttattggctctctccttgtg
acgtgttcaacatgattttttatagaactaagaatcactagcccatagtt
gatactaccttcagtgagctgggccttcccctatcaatcacctattaaga
aagtgccctacaggcctgcctagagcccacacttctgaagacatttatcc
agttgttccatcctcatctagttaggatgagtctacttagatatgtcaag
tttagcaagaagctgaacagcacagcagtctaatctgagatttgggttag
aattaaactgaaggtagatatgcatttcatttgggatattttattttatt
attattatttttttaatcaggagcatcttgaaaactgatattgagtagtt
ggggtatatgtactccagtgaaaggacatttgttcagcatgatccacatt
gagcagcatctgtacagtttttcatatttatttttgtttgtggatgtgtg
gtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_79554281_79555414
seq2: B6Ng01-030I17.b_50_1164

seq1  AAGTAGAATATTCTTGGATAATCAAAATAGGATAATCTTCCAAGATTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAATATTCTTGGATAATCAAAATAGGATAATCTTCCAAGATTGTA  50

seq1  AAGTAGGACAAAAGCAATATTAGAACCTGGTTTGCAGTTACAGTGTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGACAAAAGCAATATTAGAACCTGGTTTGCAGTTACAGTGTACTT  100

seq1  CATGATGATGAGAAGAGACTAGGGAGATAGAACAGAGAATTAGGCCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGATGAGAAGAGACTAGGGAGATAGAACAGAGAATTAGGCCTGAT  150

seq1  GTATCAATATTTCTCAAGATAGCTACTAGGTGAAAGTCCATATGCTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAATATTTCTCAAGATAGCTACTAGGTGAAAGTCCATATGCTGAGG  200

seq1  TACAGATACAAGTCATATGTAATGAAACATCCTTGCCATTATGTTACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATACAAGTCATATGTAATGAAACATCCTTGCCATTATGTTACATG  250

seq1  AAAGTCTTAAGGACTTTGGACAACGTTGAAGAAACTTGGAAAAGACTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTAAGGACTTTGGACAACGTTGAAGAAACTTGGAAAAGACTTGA  300

seq1  ACCATTTACATAGATTATACAAGGTCCAAAAGAAACATTCAGTGACTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTACATAGATTATACAAGGTCCAAAAGAAACATTCAGTGACTTTT  350

seq1  TACAAATATCGAGTGCAGATATAATAGAAAGGTATTAATCCATTAGCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATATCGAGTGCAGATATAATAGAAAGGTATTAATCCATTAGCTAG  400

seq1  GAAAGTACTTATCAAATCTTTGACTTTCAAAATGGTAGATACTGAATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTACTTATCAAATCTTTGACTTTCAAAATGGTAGATACTGAATGCA  450

seq1  AGAAGGTAATCAGACCCATAAAGGCAGGATTATCACCTAGAGATGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTAATCAGACCCATAAAGGCAGGATTATCACCTAGAGATGAAAAT  500

seq1  TTCAGAATATCTTGAAATCAATTTACTAAAAGGGGGGGTGCAATCCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATATCTTGAAATCAATTTACTAAAAGGGGGGGTGCAATCCTGCC  550

seq1  TGTGATTGTTGAGACACTATCAGTAGTATTTCGTTGGGCACAAGATATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTGTTGAGACACTATCAGTAGTATTTCGTTGGGCACAAGATATGG  600

seq1  AATGATAACATTAAGGCCTTTGTAATTTTTCATTTCAGTACTGAGATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAACATTAAGGCCTTTGTAATTTTTCATTTCAGTACTGAGATAAA  650

seq1  CAGCAAATACAGCCATCAGGTAGGGAAAGGGAGAATAATAAACTTGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATACAGCCATCAGGTAGGGAAAGGGAGAATAATAAACTTGAACC  700

seq1  CTTTGCATTTTGTCTCCTCCTCCTATTTCTCCTCCTCCTCTTCCTCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCATTTTGTCTCCTCCTCCTATTTCTCCTCCTCCTCTTCCTCCTCT  750

seq1  TCTTTTTTCTTTTATAGGTTTTATACAAAGATGTAACAATAGCCTACTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTCTTTTATAGGTTTTATACAAAGATGTAACAATAGCCTACTTA  800

seq1  GCTAGACTTAAAAATTGAACTTGTAAAGTCAAAATTGCCATAAATTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGACTTAAAAATTGAACTTGTAAAGTCAAAATTGCCATAAATTATTT  850

seq1  CATCTGCTTTTCTGTTTACCTTAAAAGTATTTTATATATTTATTTTCTTC  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATCTGCTTTTCTGTTTACCTTAAAAGTA-TTTATATATTTATTTTCTTC  899

seq1  TTTGTATACAAAATTAATACATGGATTAGGGCTGAATAGCATTTTAATTT  950
      |||||| || ||||||||||||||||||||||||||||||||||  ||||
seq2  TTTGTA-AC-AAATTAATACATGGATTAGGGCTGAATAGCATTT--ATTT  945

seq1  TTTTCCTTTAAAAACATGGGATATCACACAGGAATTGAATTACCATAGAG  1000
      |||||||||||||||||||||||||||||||| |||| ||||||||||| 
seq2  TTTTCCTTTAAAAACATGGGATATCACACAGG-ATTG-ATTACCATAGAA  993

seq1  GTCCCAGTG-AATGCACCTAAATCCTGATGCAGACATTTAACTGAAAAGG  1049
      || |||||| |||||||||||||||||||||||| |||  |||||||| |
seq2  GT-CCAGTGTAATGCACCTAAATCCTGATGCAGAAATT--ACTGAAAA-G  1039

seq1  GATGTTGCTAAATGATTGCGTGCCCCAGAACCATGCCACTCTAATCTCAT  1099
      |||| |||| |||||||||||||||  |||| |||||||||||   ||||
seq2  GATG-TGCT-AATGATTGCGTGCCC--GAACAATGCCACTCTA--TTCAT  1083

seq1  ACCTAAATGGAAGGTTGAAACTACTTGTTCATCAT  1134
      ||||||   ||||| ||||||||||||||| ||||
seq2  ACCTAA--TGAAGG-TGAAACTACTTGTTCTTCAT  1115

seq1: chr5_79699776_79700338
seq2: B6Ng01-030I17.g_456_1019 (reverse)

seq1  AACA-CACACATACAACAAACAAAAATAAATATGGAAAAAGCTGTACAGA  49
      |||| ||||||| | |||||||||||||||||||  |||| |||||||||
seq2  AACACCACACAT-CCACAAACAAAAATAAATATG--AAAAACTGTACAGA  47

seq1  TGCTGCTCAATGTGGATCATGCTGAACAAATGTCCTTTCACTGGAGTACA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTCAATGTGGATCATGCTGAACAAATGTCCTTTCACTGGAGTACA  97

seq1  TATACCCCAGCTACTCAATATCAGTTTTCAAGATGCTCCTGATT-AAAAA  148
      ||||||||| |||||||||||||||||||||||||||||||||| |||||
seq2  TATACCCCAACTACTCAATATCAGTTTTCAAGATGCTCCTGATTAAAAAA  147

seq1  ATAATAATAATAAAATAAAATAT-CCAAATGAAATGCATATCTACCTTCA  197
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATAATAATAATAAAATAAAATATCCCAAATGAAATGCATATCTACCTTCA  197

seq1  GTTTAATTCTAATCCTAATCTCAGATTAGACTGCTGTGCTGTTCAGCTTC  247
      |||||||||||| || ||||||||||||||||||||||||||||||||||
seq2  GTTTAATTCTAACCCAAATCTCAGATTAGACTGCTGTGCTGTTCAGCTTC  247

seq1  TTGCT-AACTTGACATATCTAAGTAGACTCATCCTAACTAGATGAGGATG  296
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAACTTGACATATCTAAGTAGACTCATCCTAACTAGATGAGGATG  297

seq1  GAACAACTGGATAAATGTCTTCAGAAGTGTGGGCTCTAGGCAGGCCTGTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACTGGATAAATGTCTTCAGAAGTGTGGGCTCTAGGCAGGCCTGTA  347

seq1  GGGCACTTTCTTAATAGGTGATTGATAGGGGAAGGCCCAGCTCACTGAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTTTCTTAATAGGTGATTGATAGGGGAAGGCCCAGCTCACTGAAG  397

seq1  GTAGTATCAACTATGGGCTAGTGATTCTTAGTTCTATAAAAAATCATGTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATCAACTATGGGCTAGTGATTCTTAGTTCTATAAAAAATCATGTT  447

seq1  GAACACGTCACAAGGAGAGAGCCAATAAGCAGTATCCCTTGATGGCCTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACGTCACAAGGAGAGAGCCAATAAGCAGTATCCCTTGATGGCCTCT  497

seq1  GTATTAGCTCCTGCTCCCAGATTCCAGCCCTCTTGAGTTCTTATGCCTAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGCTCCTGCTCCCAGATTCCAGCCCTCTTGAGTTCTTATGCCTAC  547

seq1  TTCTTTTCTGAGGGACA  563
      |||||||||||||||||
seq2  TTCTTTTCTGAGGGACA  564