BAC Information

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BAC

Clone NameB6Ng01-030P17
Chromosome5 (Build37)
Map Location 71,713,105 - 71,714,248
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg1, Gabra2, LOC635092
Downstream gene4930503B16Rik, Gabra4, Gabrb1, LOC666545, Commd8, Atp10d, Corin
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030P17.bB6Ng01-030P17.g
ACCDH860726DH860727
length1,1411,099
definitionDH860726|Mus musculus domesticus DNA, BAC clone: B6Ng01-030P17, 5' end.DH860727|Mus musculus domesticus DNA, BAC clone: B6Ng01-030P17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcttgcagccatttgttctggtttctgtgtgcagttgaaatac
tgaaatatcagatcacgaggcttcttccttctgccaccatgcctgacttt
tgctcatgtgtctcaccaccatggtgaactcattccattggaactgtaag
ctaaaataaaccttctctaagttgtacttggtcatggagtcaacattata
gtaactaatgcaagtataaataaattaatcccgatcacaatggcacagaa
accaatgcaaatgattaaccagagttatgcaaataaagttttatctatga
tttaggtatagtagcagaaagtcttaaggcataggtggtcctcattctac
catgtcaaggagttgagtgatatgaaagtcccataggagatgaatgttca
agggttctgatgaattttctgttattattattttagaagcagacttgggg
tgtgcataagaaaacacaacaaggagaataacaagacatcatctaagtga
gtttgttcaataagaaaactaaactctctgcttcaggaaatttctgcttt
aggaaatacagctcttgaatttgactgggtagagattttagtacaaatgg
taaaggaatctctttaacaagaagtaatgtcctctccaaggtcaaggttg
aacattagagtgctatcactttgagtgttggtctcttatctggaatgtgg
aactggagtatcatcttaagagttatgaagttctcctaagtgtgtagaaa
tgaaaggcagtgaaacgaactaatcagctaaattcagaagacaacagctg
tatctcacaggggtttgtttagggtgaagaaagttcaaatgggaaccaca
ctagcaaatagttccttgcctgtggggcaatacagttattgagaactggg
aaagcatttgacctcaattttctggcttttctgggaataggataagatta
aaacaatttataaagatagactcaaacttatgataaaatagaacattatg
catgcctgtataattaacctataatttaaaaagataagttagaaatatgt
cattgaatgttcagttagacaataatctagtgtcattttgtgccataaaa
gcctgactggatgtctctttcctaggcccaggatgcctgca
gaattcaccactcctgccttttatcattattattattattattattatta
ttattattattattattattattattttaatgtagatgcccaagccttaa
gggggagagatttaataatgagatttcatttagggctgagtgcatcaaag
tcagtctgtgcacgttgtccactgattcttgttacctaaccagtaaaatt
ctttattttatatttactctttattttattttattttttacaatttttat
tagatattttcttaatttgcaattcaaatactaccccaaaaatcccttat
accctccccacaccctgcgctccaacccatccactccttcctggccctgg
tattcacctgtattggggcatataatctttgcaagacaaagggcctctcc
tcccaatgatggccagttaagccatcttctgctacatatgcagctaaaga
tatgagctcagggggtactggttagttcatattgctgttcctcttatagg
gttacagaccccttcagctccttggtactttctctagctcctccattggg
ggctctgtgttccatccaatagatgactctgagcctccacttttgtattt
gccaggcactggcatagcctcacaagagacagctgtatctgggtcctatc
agcaaaatcttgctggcatgtgcaatagtgtctgcgtttggtagctggtt
ataggatagatcacagggtggggtagcctgtgggtggtccatcctttcgt
cttagctccaaactttgtctctgtaactccttctatgggcattttgttcc
ctattctaagaaggaagaaatatccacactttgggtattcttcttcttga
gtttcatgtgttttgcaaattgtatcttgggtattctaagtttctgggct
aatatccacttatcagtgagtgcatatcaagtgacttcttttgtgattgg
gttacttcactcaaggtgataccctctagatccatccagttgcccagaat
tcataattattgttttatggcgagatgaattccatggaagattgactaat
tttggtccatcccctgtgtagggacatcgtggtcttatcagctctcgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_71713105_71714248
seq2: B6Ng01-030P17.b_46_1186

seq1  GAATTCCTCTTGCAGCCATTTGTTCTGGTTTCTGTGTGCAGTTGAAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTGCAGCCATTTGTTCTGGTTTCTGTGTGCAGTTGAAATAC  50

seq1  TGAAATATCAGATCACGAGGCTTCTTCCTTCTGCCACCATGCCTGACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATCAGATCACGAGGCTTCTTCCTTCTGCCACCATGCCTGACTTT  100

seq1  TGCTCATGTGTCTCACCACCATGGTGAACTCATTCCATTGGAACTGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGTGTCTCACCACCATGGTGAACTCATTCCATTGGAACTGTAAG  150

seq1  CTAAAATAAACCTTCTCTAAGTTGTACTTGGTCATGGAGTCAACATTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATAAACCTTCTCTAAGTTGTACTTGGTCATGGAGTCAACATTATA  200

seq1  GTAACTAATGCAAGTATAAATAAATTAATCCCGATCACAATGGCACAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTAATGCAAGTATAAATAAATTAATCCCGATCACAATGGCACAGAA  250

seq1  ACCAATGCAAATGATTAACCAGAGTTATGCAAATAAAGTTTTATCTATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGCAAATGATTAACCAGAGTTATGCAAATAAAGTTTTATCTATGA  300

seq1  TTTAGGTATAGTAGCAGAAAGTCTTAAGGCATAGGTGGTCCTCATTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTATAGTAGCAGAAAGTCTTAAGGCATAGGTGGTCCTCATTCTAC  350

seq1  CATGTCAAGGAGTTGAGTGATATGAAAGTCCCATAGGAGATGAATGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAAGGAGTTGAGTGATATGAAAGTCCCATAGGAGATGAATGTTCA  400

seq1  AGGGTTCTGATGAATTTTCTGTTATTATTATTTTAGAAGCAGACTTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCTGATGAATTTTCTGTTATTATTATTTTAGAAGCAGACTTGGGG  450

seq1  TGTGCATAAGAAAACACAACAAGGAGAATAACAAGACATCATCTAAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATAAGAAAACACAACAAGGAGAATAACAAGACATCATCTAAGTGA  500

seq1  GTTTGTTCAATAAGAAAACTAAACTCTCTGCTTCAGGAAATTTCTGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTCAATAAGAAAACTAAACTCTCTGCTTCAGGAAATTTCTGCTTT  550

seq1  AGGAAATACAGCTCTTGAATTTGACTGGGTAGAGATTTTAGTACAAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATACAGCTCTTGAATTTGACTGGGTAGAGATTTTAGTACAAATGG  600

seq1  TAAAGGAATCTCTTTAACAAGAAGTAATGTCCTCTCCAAGGTCAAGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAATCTCTTTAACAAGAAGTAATGTCCTCTCCAAGGTCAAGGTTG  650

seq1  AACATTAGAGTGCTATCACTTTGAGTGTTGGTCTCTTATCTGGAATGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAGAGTGCTATCACTTTGAGTGTTGGTCTCTTATCTGGAATGTGG  700

seq1  AACTGGAGTATCATCTTAAGAGTTATGAAGTTCTCCTAAGTGTGTAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGTATCATCTTAAGAGTTATGAAGTTCTCCTAAGTGTGTAGAAA  750

seq1  TG-AAGGCAGTGAAACGAACTAATCAGCTAAATTCAGAAGACAACAGCTG  799
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCAGTGAAACGAACTAATCAGCTAAATTCAGAAGACAACAGCTG  800

seq1  TATCTCACAGGGGTTTGTTTAGGGTGAAGAAAGTTCAAATGGGAACCACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCACAGGGGTTTGTTTAGGGTGAAGAAAGTTCAAATGGGAACCACA  850

seq1  CTAGCAAATAGTTCCTTGCCTGTGGGGCAATACAGTTATTGAGAACTGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAATAGTTCCTTGCCTGTGGGGCAATACAGTTATTGAGAACTGGG  900

seq1  AAAGCATTTGACCTCAATTTTTCTGGCTTTTCTGGGAATAGGATAAGATT  949
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAGCATTTGACCTCAA-TTTTCTGGCTTTTCTGGGAATAGGATAAGATT  949

seq1  AAAACAATTTATAAAGATAGACTCAAACCTATGATAAAATAGAACATTAT  999
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAAACAATTTATAAAGATAGACTCAAACTTATGATAAAATAGAACATTAT  999

seq1  GCATGCCTGTATTAATTAAACTATAATTTTAAATAAGGATAGTTAG-AAT  1048
      ||||||||||| ||||||| |||||||||  || |||   |||||| |||
seq2  GCATGCCTGTA-TAATTAACCTATAATTT--AAAAAGATAAGTTAGAAAT  1046

seq1  ATGTCATTGAATTGTTCAGTTAAACCAATAATCTAGTGTCTATTTGTGGC  1098
      ||||||||||| |||||||||| | |||||||||||||||  ||||| ||
seq2  ATGTCATTGAA-TGTTCAGTTAGA-CAATAATCTAGTGTCATTTTGT-GC  1093

seq1  TATAAAAGCCTGACT-GATGTCTCTTTCCATGCCACAGGATG-CTGCA  1144
       |||||||||||||| |||||||||||||  | | ||||||| |||||
seq2  CATAAAAGCCTGACTGGATGTCTCTTTCCTAGGCCCAGGATGCCTGCA  1141