BAC Information

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BAC

Clone NameB6Ng01-031B05
Chromosome5 (Build37)
Map Location 86,722,112 - 86,844,567
singlet/doubletdoublet
Overlap geneTmprss11d, Tmprss11a
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c
Downstream gene9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031B05.bB6Ng01-031B05.g
ACCDH860791DH860792
length1,0001,071
definitionDH860791|Mus musculus domesticus DNA, BAC clone: B6Ng01-031B05, 5' end.DH860792|Mus musculus domesticus DNA, BAC clone: B6Ng01-031B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,722,112 - 86,723,111)(86,843,483 - 86,844,567)
sequence
gaattctttgtttagctctgagccccattttttaatgggattatttgatt
ttctggagtccagcttcttgagttatttatatatatattggatattagtc
ccctatttgatttaggataggtaaagatcctttcccaatctgttggtggc
ctttttgtcttattgacagtgtcttttgccttgccgaagctttgcaattt
tatgaggtcccatttgtcgattctcgattttgcagcacaagccattgctg
ttctattcaggaattttccccctgtacccatatctcaagggttttcctta
ctttctcctctatgtttcagtgtctctggttttatgtggaattccttaat
ctacttagatttgaccttagtacaaggagataggaatggatcaattcata
ttcttctacataataaccgccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggtttttgacaagggagcaaattttttttc
ttaatttttgaagcaattgtgaatagaacctttcctttgatgtctgtctt
gacatatccattgacacactgatttttatatgttgattatatatctttct
gctttacttgaactgtttaattaagtgtaagtgctttctgacacagtatt
ttaagtatagtgttatgcaattagtgttcttctcccttttctgtttgtat
ctcatttatttcttctgcttgtattgcctgtatttgtaggaagccacata
tgccattacaaggtggcgctggctactgctggccaccacacataagtttg
ggtaaacaaccaatgtgtacatatgcagtgaagtgtttcaccaagtcact
gcctgtcccgggcatgataatgaggctttgcaaggtactgagagagaata
accaatcagatgagagacatgcaaatgaggtatgatgatgaggctcagtg
aggtactgagagagataccaatcagatgaggaacatgcaaatgaggtaga

gaattccagaacgtttgtggtgttcttagtttcctctgcttctgcctgtc
ataaggacctagcttaggctagatccctacatttttctgagacaaagcca
tttttcacacaacagaatcatatacagataagatctttgtaaatgtacag
gactgagtgaacattatttaagaggtattttatcaagccaagaaacaata
ccaactaagcatgtaaatttttagaaacaatctgaaatcaataaacacaa
cactcattaaaaaaaaaaaaacagaatgctgtctttaaaaataaagacta
gtttgaagggctcagcagttaatagcactgataagtagcaccgctaatag
cacccaggtccttccaaaggacctaggttctgttcccagtactcacacgg
cagctcccaatcatatgtaactccagttccaaggaatccagtcctttaac
ctccacagacactgcaaggatatggtgtacaagcatacaggaatgcaaaa
cttcaatacacataaatcaaaattaataaaaaaataagttatttcttaaa
gtaaagattcaaaggttttccagaaaacaattggcaatcctagttattta
ttaaaatgaatggtacaatccatttgtttgtttgtttgtttttttgtttg
tttgctgaaacagggtctcactgtgtaatcctgtctgtagaacaaactgg
tatcaaacttttagagatacacgactctgtttttatgggtattaatggca
cgtgctatattttagttgatttttttttctaggactgctcatgctagcct
tactctatgtaaacaacttttgaatgaagaagattagcaaagaatctcct
ctcctcaatccatctaagacttattgaaagtctgagaatgctttgttttg
tctctttttttcccattaaggggaatcccaaatgagctccgtgaagccag
agtacaatcatagcatgacatctgcaagaagcgaacacgtgtatggcatg
aataaacgtgggatgttctgtgctgattctggaaggaaatacgatgctgg
caggtaggtggaaagaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86722112_86723111
seq2: B6Ng01-031B05.b_46_1043

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGATTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGATTATTTGATT  50

seq1  TTCTGGAGTCCAGCTTCTTGAGTTATTTATATATATATTGGATATTAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCAGCTTCTTGAGTTATTTATATATATATTGGATATTAGTC  100

seq1  CCCTATTTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGC  150

seq1  CTTTTTGTCTTATTGACAGTGTCTTTTGCCTTGCCGAAGCTTTGCAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTCTTATTGACAGTGTCTTTTGCCTTGCCGAAGCTTTGCAATTT  200

seq1  TATGAGGTCCCATTTGTCGATTCTCGATTTTGCAGCACAAGCCATTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGTCCCATTTGTCGATTCTCGATTTTGCAGCACAAGCCATTGCTG  250

seq1  TTCTATTCAGGAATTTTCCCCCTGTACCCATATCTCAAGGGTTTTCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCAGGAATTTTCCCCCTGTACCCATATCTCAAGGGTTTTCCTTA  300

seq1  CTTTCTCCTCTATGTTTCAGTGTCTCTGGTTTTATGTGGAATTCCTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCTCTATGTTTCAGTGTCTCTGGTTTTATGTGGAATTCCTTAAT  350

seq1  CTACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCATA  400

seq1  TTCTTCTACATAATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTACATAATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATG  450

seq1  CTGTCTTTTTTCCACTGGATGGTTTTTGACAAGGGAGCAAATTTTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTTTTCCACTGGATGGTTTTTGACAAGGGAGCAAATTTTTTTTC  500

seq1  TTAATTTTTGAAGCAATTGTGAATAGAACCTTTCCTTTGATGTCTGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTGAAGCAATTGTGAATAGAACCTTTCCTTTGATGTCTGTCTT  550

seq1  GACATATCCATTGACACACTGATTTTTATATGTTGATTATATATCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATCCATTGACACACTGATTTTTATATGTTGATTATATATCTTTCT  600

seq1  GCTTTACTTGAACTGTTTAATTAAGTGTAAGTGCTTTCTGACACAGTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACTTGAACTGTTTAATTAAGTGTAAGTGCTTTCTGACACAGTATT  650

seq1  TTAAGTATAGTGTTATGCAATTAGTGTTCTTCTCCCTTTTCTGTTTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATAGTGTTATGCAATTAGTGTTCTTCTCCCTTTTCTGTTTGTAT  700

seq1  CTCATTTATTTCTTCTGCTTGTATTGCCTGTATTTGTAGGAAGCCACATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTATTTCTTCTGCTTGTATTGCCTGTATTTGTAGGAAGCCACATA  750

seq1  TGCCATTACAAGGTGGCGCTGGCTACTGCTGGCCACCACACATAAGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTACAAGGTGGCGCTGGCTACTGCTGGCCACCACACATAAGTTTG  800

seq1  GGTAAACAACCAATGTGTACATATGCAGTGAAGTGTTTCACCAAGTCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACAACCAATGTGTACATATGCAGTGAAGTGTTTCACCAAGTCACT  850

seq1  GCCTGTCCCGGGCATGATAATGAGGCTTTGCAAGGTACTGAGAGAGAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCCCGGGCATGATAATGAGGCTTTGCAAGGTACTGAGAGAGAATA  900

seq1  ACCAATCAGATGAGAGACATGCAAATGAGGTATGATGATGAGGCTCAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCAGATGAGAGACATGCAAATGAGGTATGATGATGAGGCTCAGTG  950

seq1  AGGTACTGAGAGAGAATAACCAATCAGATGAGGAACATGCAAATGAGGTA  1000
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  AGGTACTGAGAGAGA--TACCAATCAGATGAGGAACATGCAAATGAGGTA  998

seq1: chr5_86843483_86844567
seq2: B6Ng01-031B05.g_65_1135 (reverse)

seq1  TATTTTCTCTCCAACCTACCCTGCAGGCATCGTAATTTCCTTCCAGAAAT  50
      |||||||| ||| ||||| |||||  ||||||| ||||||||||||||  
seq2  TATTTTCTTTCC-ACCTA-CCTGCCAGCATCGT-ATTTCCTTCCAGAA--  45

seq1  CCAGCACAGAACATCCCACGTTTTATTTCATTGCCATACACGTG-TCGCT  99
       ||||||||||||||||||||||   |||| ||||||||||||| |||||
seq2  TCAGCACAGAACATCCCACGTTT--ATTCA-TGCCATACACGTGTTCGCT  92

seq1  TCTTGCAGATGTCATTGCTTATGATTTGTACTCTGGCTTCACGGAGCTCA  149
      |||||||||||||| ||| ||||| |||||||||||||||||||||||||
seq2  TCTTGCAGATGTCA-TGC-TATGA-TTGTACTCTGGCTTCACGGAGCTCA  139

seq1  TTTTGGGATTCCCCTTAATGGGAAAAAAAAGAGACAAAAACAAAGCATTC  199
       ||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  -TTTGGGATTCCCCTTAATGGG-AAAAAAAGAGAC-AAAACAAAGCATTC  186

seq1  TCAGACTTTTCAATAAGTCTTAGATGGATTGAGGAGAGGAGATTCTTTGC  249
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAC-TTTCAATAAGTCTTAGATGGATTGAGGAGAGGAGATTCTTTGC  235

seq1  TAATCTTCTTCATTCAAAAGTTGTTTACATAGAGTAAGGCTAGCATGAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTCTTCATTCAAAAGTTGTTTACATAGAGTAAGGCTAGCATGAGC  285

seq1  AGTCCTAGAAAAAAAAATCAACTAAAATATAGCACGTGCCATTAATACCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAGAAAAAAAAATCAACTAAAATATAGCACGTGCCATTAATACCC  335

seq1  ATAAAAACAGAGTCGTGTATCTCTAAAAGTTTGATACCAGTTTGTTCTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACAGAGTCGTGTATCTCTAAAAGTTTGATACCAGTTTGTTCTAC  385

seq1  AGACAGGATTACACAGTGAGACCCTGTTTCAGCAAACAAACAAAAAAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGATTACACAGTGAGACCCTGTTTCAGCAAACAAACAAAAAAACA  435

seq1  AACAAACAAACAAATGGATTGTACCATTCATTTTAATAAATAACTAGGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAATGGATTGTACCATTCATTTTAATAAATAACTAGGAT  485

seq1  TGCCAATTGTTTTCTGGAAAACCTTTGAATCTTTACTTTAAGAAATAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATTGTTTTCTGGAAAACCTTTGAATCTTTACTTTAAGAAATAACT  535

seq1  TATTTTTTTATTAATTTTGATTTATGTGTATTGAAGTTTTGCATTCCTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTATTAATTTTGATTTATGTGTATTGAAGTTTTGCATTCCTGT  585

seq1  ATGCTTGTACACCATATCCTTGCAGTGTCTGTGGAGGTTAAAGGACTGGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGTACACCATATCCTTGCAGTGTCTGTGGAGGTTAAAGGACTGGA  635

seq1  TTCCTTGGAACTGGAGTTACATATGATTGGGAGCTGCCGTGTGAGTACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGGAACTGGAGTTACATATGATTGGGAGCTGCCGTGTGAGTACTG  685

seq1  GGAACAGAACCTAGGTCCTTTGGAAGGACCTGGGTGCTATTAGCGGTGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGAACCTAGGTCCTTTGGAAGGACCTGGGTGCTATTAGCGGTGCT  735

seq1  ACTTATCAGTGCTATTAACTGCTGAGCCCTTCAAACTAGTCTTTATTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATCAGTGCTATTAACTGCTGAGCCCTTCAAACTAGTCTTTATTTTT  785

seq1  AAAGACAGCATTCTGTTTTTTTTTTTTTAATGAGTGTTGTGTTTATTGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAGCATTCTGTTTTTTTTTTTTTAATGAGTGTTGTGTTTATTGAT  835

seq1  TTCAGATTGTTTCTAAAAATTTACATGCTTAGTTGGTATTGTTTCTTGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTGTTTCTAAAAATTTACATGCTTAGTTGGTATTGTTTCTTGGC  885

seq1  TTGATAAAATACCTCTTAAATAATGTTCACTCAGTCCTGTACATTTACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAAATACCTCTTAAATAATGTTCACTCAGTCCTGTACATTTACAA  935

seq1  AGATCTTATCTGTATATGATTCTGTTGTGTGAAAAATGGCTTTGTCTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTATCTGTATATGATTCTGTTGTGTGAAAAATGGCTTTGTCTCAG  985

seq1  AAAAATGTAGGGATCTAGCCTAAGCTAGGTCCTTATGACAGGCAGAAGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTAGGGATCTAGCCTAAGCTAGGTCCTTATGACAGGCAGAAGCA  1035

seq1  GAGGAAACTAAGAACACCACAAACGTTCTGGAATTC  1085
      ||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACTAAGAACACCACAAACGTTCTGGAATTC  1071