BAC Information

Click to search

BAC

Clone NameB6Ng01-031D14
Chromosome5 (Build37)
Map Location 124,656,041 - 124,834,496
singlet/doubletdoublet
Overlap genePitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1
Upstream genePsmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4
Downstream geneSetd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031D14.bB6Ng01-031D14.g
ACCDH860901DH860902
length1,1161,032
definitionDH860901|Mus musculus domesticus DNA, BAC clone: B6Ng01-031D14, 5' end.DH860902|Mus musculus domesticus DNA, BAC clone: B6Ng01-031D14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,656,041 - 124,657,190)(124,833,450 - 124,834,496)
sequence
gaattcctgcctgtgggagctcagcccaaactgggatcacctggtgtgct
ggcctgggcaatggtgctggcagtggggacttgggaatgggggcaaataa
aattgttccacaaagaggtctgggcagggctaaaacagaaaaaaaaaaaa
aaaaaagacaccaaacgaggtccacgatagcctccagcaggagcactgcc
caaggctggacaatcctcttcccagctgttgcaccagaggagtgaaagct
gcaggaacaggaacaggggccaccattcttagcataatctactccccata
tcatgtggctgtccctaggacccacttattaggtcactcgccattttctt
tctactgtggtcactcagagctgaagaaaacgtcagtagtttacctgcta
ttacagctcccaacatacagctcactttcccttcccttccctaagcagaa
cctccttccacccctccttcgccctagaggaacaagtgtgctcaggcggg
gagttgggagggactgggtctctttgagagaacacactcaaacacactgg
cccggcagcagcggtggcatggctggggaggtgttccagcagacttattt
atagccgagcccccatccacatgctcccccaatgctgcctgcctgcctgc
ttgccactggggcttttcaatctgtgtctatatttatcacttgaagccgt
tgggataatggcaaggccagaaatagccttgaagacattcacgtgaagct
gatgggcaggtccctagctcccaggccgacctcaccccaacatctgccac
ttggcagtagggaatgggaaacagctggatagggctgggcagacagatgg
gaacacataatccctcttcccctgctggccttggcctctgtggtgaggca
gggacacgtccagactgatatatcacagctgccaggctgagggagccgag
tgacacgctttttgacgtcagtgtgctatcggagcagacatcagctagaa
agggaggctatggtgcaagctgggctcactgaagcaggccacctctacct
ggggcagctcttgaccctcagactgacttgagagcttgcaggagaactgg
gtccgcttctgcgtac
gaattcttactcttgataaaggtaatgtcacactgtatgtgcatgtaact
tagattagtggagccttccttatgcttttgtacactaaagaaaccccaac
tcgcgtggatgactttggagaaatctggttctctttccactttgcttttg
agacactctgtttctatggctgtactgactactctaagccagttggcctt
tgagtttctgggtgagtttcctgtgtctgtctcctctcctaatatagaat
ttatttttctttttaatttttaatgtaattattcattatatatacagtgt
tctgcctgcatgtattcttgcaagtcagaaggcaccagacctcattatag
atgtctatgcgtcacaatgtggttgctggaaattgaacacaggacctttg
gaaatgtggctagtgctcttaacctctggtccatctctccagcccccact
atagaatttcttgaattaaagacaggagcccctggatctagcttttttac
atggtggatttagtgaccacattcatcaggcttagatggcaaacactttg
ataagttgaatcattgcaccaactctgtgattttgtatttttgtgacact
gtcacattcttggctagactagccctattggtctcatagcaatattttgc
cttagaaactctagtgctgggattacagctagttctagaatgtaacccag
aaccttctatatactagtaaaatggtattccactgagttgttgaactcag
aggtctgctggcctctgtctcctgagtgctgggactaaaggtgtcagctt
gaaacctccttctacttttgtttatttgctcattattttaacatctgttt
ctatgctgggagtgttaaagtagcaaaagtccatgtttatcttatcccga
tttcatgatctctcacagatacgtgctcataaatatgcgttatctctttt
aaggaaatatatccaagccgggcgtgatgggggcacgctttaatcccagg
actcgggaggagagacatggcgggtttctaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_124656041_124657190
seq2: B6Ng01-031D14.b_49_1164

seq1  GAATTCCTGCCTGTGGGAGCTCAGCCCAAACTGGGATCACCTGGTGTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCTGTGGGAGCTCAGCCCAAACTGGGATCACCTGGTGTGCT  50

seq1  GGCCTGGGCAATGGTGCTGGCAGTGGGGACTTGGGAATGGGGGCAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGCAATGGTGCTGGCAGTGGGGACTTGGGAATGGGGGCAAATAA  100

seq1  AATTGTTCCACAAAGAGGTCTGGGCAGGGCTAAAACAGAAAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTCCACAAAGAGGTCTGGGCAGGGCTAAAACAGAAAAAAAAAAAA  150

seq1  AAAAAAGACACCAAACGAGGTCCACGATAGCCTCCAGCAGGAGCACTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGACACCAAACGAGGTCCACGATAGCCTCCAGCAGGAGCACTGCC  200

seq1  CAAGGCTGGACAATCCTCTTCCCAGCTGTTGCACCAGAGGAGTGAAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGGACAATCCTCTTCCCAGCTGTTGCACCAGAGGAGTGAAAGCT  250

seq1  GCAGGAACAGGAACAGGGGCCACCATTCTTAGCATAATCTACTCCCCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAACAGGAACAGGGGCCACCATTCTTAGCATAATCTACTCCCCATA  300

seq1  TCATGTGGCTGTCCCTAGGACCCACTTATTAGGTCACTCGCCATTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGCTGTCCCTAGGACCCACTTATTAGGTCACTCGCCATTTTCTT  350

seq1  TCTACTGTGGTCACTCAGAGCTGAAGAAAACGTCAGTAGTTTACCTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGTGGTCACTCAGAGCTGAAGAAAACGTCAGTAGTTTACCTGCTA  400

seq1  TTACAGCTCCCAACATACAGCTCACTTTCCCTTCCCTTCCCTAAGCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCTCCCAACATACAGCTCACTTTCCCTTCCCTTCCCTAAGCAGAA  450

seq1  CCTCCTTCCACCCCTCCTTCGCCCTAGAGGAACAAGTGTGCTCAGGCGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCCACCCCTCCTTCGCCCTAGAGGAACAAGTGTGCTCAGGCGGG  500

seq1  GAGTTGGGAGGGACTGGGTCTCTTTGAGAGAACACACTCAAACACACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGGAGGGACTGGGTCTCTTTGAGAGAACACACTCAAACACACTGG  550

seq1  CCCGGCAGCAGCGGTGGCATGGCTGGGGAGGTGTTCCAGCAGACTTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGCAGCAGCGGTGGCATGGCTGGGGAGGTGTTCCAGCAGACTTATTT  600

seq1  ATAGCCGAGCCCCCATCCACATGCTCCCCCAATGCTGCCTGCCTGCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCGAGCCCCCATCCACATGCTCCCCCAATGCTGCCTGCCTGCCTGC  650

seq1  TTGCCACTGGGGCTTTTCAATCTGTGTCTATATTTATCACTTGAAGCCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACTGGGGCTTTTCAATCTGTGTCTATATTTATCACTTGAAGCCGT  700

seq1  TGGGATAATGGCAAGGCCAGAAATAGCCTTGAAGACATTCACGTGAAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAATGGCAAGGCCAGAAATAGCCTTGAAGACATTCACGTGAAGCT  750

seq1  GATGGGCAGGTCCCTAGCTCCCAGGCCGACCTCACCCCAACATCTGCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCAGGTCCCTAGCTCCCAGGCCGACCTCACCCCAACATCTGCCAC  800

seq1  TTGGCAGTAGGGAATGGGAAACAGCTGGATAGGGCTGGGCAGACAGATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGTAGGGAATGGGAAACAGCTGGATAGGGCTGGGCAGACAGATGG  850

seq1  GAACAACATAATCCCTCTTCCCCTGCTGGCCTTGGCCCTCTGTGGTGAGG  900
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAC-ACATAATCCCTCTTCCCCTGCTGGCCTTGG-CCTCTGTGGTGAGG  898

seq1  CAGGGGACACGTCCAGACTGATATATCACAGCTGCCAGGCTGAGGGGAGG  950
      || |||||||||||||||||||||||||||||||||||||||||||   |
seq2  CA-GGGACACGTCCAGACTGATATATCACAGCTGCCAGGCTGAGGG--AG  945

seq1  CCGAAGGTGACACGCTTTTTTGACGTCAGTGTGCTAATCGGAGCAGACCA  1000
      ||||  ||||||||| ||||||||||||||||||| ||||||||||| ||
seq2  CCGA--GTGACACGC-TTTTTGACGTCAGTGTGCT-ATCGGAGCAGA-CA  990

seq1  TCCAGCCTAGAAAAGGAGAGGCCTATGGTGGCAGGCTGGGCTCACTGAAA  1050
      | ||| ||||||| |||   | ||||||| ||| ||||||||||||| ||
seq2  T-CAG-CTAGAAAGGGA---GGCTATGGT-GCAAGCTGGGCTCACTG-AA  1033

seq1  GCAGGCCACCTCTACCCTGGGGAGCAGCCCTCCTGTTTGACCCTCAGACT  1100
      |||||||||||||| ||||||  ||||| |      ||||||||||||||
seq2  GCAGGCCACCTCTA-CCTGGG--GCAGCTC------TTGACCCTCAGACT  1074

seq1  GAACTTGGTATGAGCTTGCAGGAGGAAACTGGGTCCGGCTTCCTGCGTAC  1150
      | |||||    |||||||||||||  |||||||||| |||| ||||||||
seq2  G-ACTTG---AGAGCTTGCAGGAG--AACTGGGTCC-GCTT-CTGCGTAC  1116

seq1: chr5_124833450_124834496
seq2: B6Ng01-031D14.g_64_1095 (reverse)

seq1  CTCAGAAACCCGCC-TGTCTCTGCCTCCCGAGTGCTTGGGATTAAAGGCG  49
      || ||||||||||| ||||||| |||||||||| | |||||||||| |||
seq2  CTTAGAAACCCGCCATGTCTCT-CCTCCCGAGT-CCTGGGATTAAA-GCG  47

seq1  TG-CCCCACCACGCCCGGCTTGGAATAATAT-TTTCCTTAAAAGAGATTA  97
      || ||||| ||||||||||||||    |||| |||||||||||||||| |
seq2  TGCCCCCATCACGCCCGGCTTGG----ATATATTTCCTTAAAAGAGATAA  93

seq1  CGCATAATTTATGAGCACGTATCTGTGAGAGATCATGAAATTCGGGATAA  147
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  CGCAT-ATTTATGAGCACGTATCTGTGAGAGATCATGAAA-TCGGGATAA  141

seq1  GATAAACATGGAACTTTTTGCTTACTTTTAACAACTCCCAAGCATAGAAA  197
      ||||||||||||   |||||| ||| |||||| |||||| ||||||||||
seq2  GATAAACATGGA--CTTTTGC-TAC-TTTAAC-ACTCCC-AGCATAGAAA  185

seq1  CAGATGTTAAAAATAAATGAGCAAATAAACAAAAGTAGAAAGGAGGTTTC  247
      ||||||||||||   ||||||||||||||||||||||| |||||||||||
seq2  CAGATGTTAAAA--TAATGAGCAAATAAACAAAAGTAG-AAGGAGGTTTC  232

seq1  AAGCTGACACCTTTAGTCCCAGCACTCAGGAGACAGAGGCCAGCAGACCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGACACCTTTAGTCCCAGCACTCAGGAGACAGAGGCCAGCAGACCT  282

seq1  CTGAGTTCAACAACTCAGTGGAATACCATTTTACTAGTATATAGAAGGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCAACAACTCAGTGGAATACCATTTTACTAGTATATAGAAGGTT  332

seq1  CTGGGTTACATTCTAGAACTAGCTGTAATCCCAGCACTAGAGTTTCTAAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTACATTCTAGAACTAGCTGTAATCCCAGCACTAGAGTTTCTAAG  382

seq1  GCAAAATATTGCTATGAGACCAATAGGGCTAGTCTAGCCAAGAATGTGAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATATTGCTATGAGACCAATAGGGCTAGTCTAGCCAAGAATGTGAC  432

seq1  AGTGTCACAAAAATACAAAATCACAGAGTTGGTGCAATGATTCAACTTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCACAAAAATACAAAATCACAGAGTTGGTGCAATGATTCAACTTAT  482

seq1  CAAAGTGTTTGCCATCTAAGCCTGATGAATGTGGTCACTAAATCCACCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGTTTGCCATCTAAGCCTGATGAATGTGGTCACTAAATCCACCAT  532

seq1  GTAAAAAAGCTAGATCCAGGGGCTCCTGTCTTTAATTCAAGAAATTCTAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAAGCTAGATCCAGGGGCTCCTGTCTTTAATTCAAGAAATTCTAT  582

seq1  AGTGGGGGCTGGAGAGATGGACCAGAGGTTAAGAGCACTAGCCACATTTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGGGCTGGAGAGATGGACCAGAGGTTAAGAGCACTAGCCACATTTC  632

seq1  CAAAGGTCCTGTGTTCAATTTCCAGCAACCACATTGTGACGCATAGACAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTCCTGTGTTCAATTTCCAGCAACCACATTGTGACGCATAGACAT  682

seq1  CTATAATGAGGTCTGGTGCCTTCTGACTTGCAAGAATACATGCAGGCAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATGAGGTCTGGTGCCTTCTGACTTGCAAGAATACATGCAGGCAGA  732

seq1  ACACTGTATATATAATGAATAATTACATTAAAAATTAAAAAGAAAAATAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTATATATAATGAATAATTACATTAAAAATTAAAAAGAAAAATAA  782

seq1  ATTCTATATTAGGAGAGGAGACAGACACAGGAAACTCACCCAGAAACTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATATTAGGAGAGGAGACAGACACAGGAAACTCACCCAGAAACTCA  832

seq1  AAGGCCAACTGGCTTAGAGTAGTCAGTACAGCCATAGAAACAGAGTGTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAACTGGCTTAGAGTAGTCAGTACAGCCATAGAAACAGAGTGTCT  882

seq1  CAAAAGCAAAGTGGAAAGAGAACCAGATTTCTCCAAAGTCATCCACGCGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAAAGTGGAAAGAGAACCAGATTTCTCCAAAGTCATCCACGCGA  932

seq1  GTTGGGGTTTCTTTAGTGTACAAAAGCATAAGGAAGGCTCCACTAATCTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGTTTCTTTAGTGTACAAAAGCATAAGGAAGGCTCCACTAATCTA  982

seq1  AGTTACATGCACATACAGTGTGACATTACCTTTATCAAGAGTAAGAATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACATGCACATACAGTGTGACATTACCTTTATCAAGAGTAAGAATTC  1032