BAC Information

Click to search

BAC

Clone NameB6Ng01-031E21
Chromosome5 (Build37)
Map Location 33,588,213 - 33,750,209
singlet/doubletdoublet
Overlap geneCtbp1, Maea, 4933407H18Rik
Upstream genePlb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2
Downstream geneLOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031E21.bB6Ng01-031E21.g
ACCDH860963DH860964
length1,104802
definitionDH860963|Mus musculus domesticus DNA, BAC clone: B6Ng01-031E21, 5' end.DH860964|Mus musculus domesticus DNA, BAC clone: B6Ng01-031E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,749,088 - 33,750,209)(33,588,213 - 33,589,018)
sequence
gaattccagagggaaaaaaatacaattgggatgtaggaaacagttgaaga
aatgagatagttttcctacatgctagagaaggtaaaggggcaactgtggt
tcaaagaggaagttagagaacattaacaataacaaagaaaaatggcagcc
atactttcagccaagcagcaagttcggggccttaataagtcacctagaag
ggcacagggaagggctggggtataatgctgtggcagagcatgtacccagt
atatgtaaggctgtgtcccatcctcagcgccacagaagagaaaaagggaa
aaagaaagtgtataggaagatgaaccaagcttacagcagaatacccagct
gagctgccatgcccatcacgggtccaggagggagtcttatggacactctc
cctgcagattctttaagaacattcttagcataggtgatctgtcaagaaaa
agaaaatcctacagctctgaaaggacgctaggagctctagactcatcatg
ggcttgctgtagcagaggttagcctggcatggcacagaagaagcgaccag
ctgctctttagggattcctgaggccctgaaggcaatgggcccaatctgct
ttactgcctactcttctatgtcaagttttactgctcctagatacagccat
ttatctgtgctactttcagagtggaactatgacagacctgatgcagccca
gacaggcaaaatatttcctctgtgtccctatatggaaacacttgttgtct
ctgctttagatcaccctgtgcatagggaagggcccctggctcttggattc
tcatgggtggggaacagaggacctgggcagggtccactctgagagggatg
tggagtcacagacagctagctaccttcagctctggagctctgggtcccag
gtttgtattgtgtatcacaagataccaggctgccccttctctgggcaact
gtaaaaaacagtggtccatgctaggagtggtggctcatacttctaatcta
gtaatcaagcagcagaggcaggtagattccttgagtcaagctatcctgtc
tacaagtagtcaggacagccagacgataccagagaaacctgtctcaaaaa
aaaa
gaattcctgatctttccaagacttttatcatgaatgagtgatcctgggga
acaggaggccatcatggccatctgtataagttactcagggctcaggtctg
tgtggtgggtgggagtagaggagcaaatgtggactcaacttagtgttggt
tcaggaaagactcaaggttcccagctggtcagtgcatgatggaccaggcc
accccctatctgggcatctgtagaggcctccagggcgtgggtccaaggtg
ggaagaggccaggcaggaagggggccacagggccagctggggagtgaaca
gtcctgctccgagggattagaggtctcctctgggccctgggctcaggccc
agcagaccagatggttttctttacacagagagagccaagagtcagaggag
ggactggcagctggccttcctccattcttgcgttttaatagttgtttttt
gctggaaaatccatttccagagtcactctgggctctgaaccagagcatca
ggaagaagagggtgtttcctggcctccttgggcccattctgggatcagtg
tgaggccagattgaggtggccacaagaagtggctggctactgctgtgccc
ctgcccaggctgccctagaatgtccaccctctcccaactacttacccaaa
cagaggggttgagagaagccatagaagaggatggagataggtcccaggtc
cctgaaacaggtccctttgtctacacatcctcgggtcctgcttgctcctt
gtcagcctgcccaaatgctgctctgggtctgagataagcctctactcctg
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_33749088_33750209
seq2: B6Ng01-031E21.b_45_1148 (reverse)

seq1  TTTTTTTTTAAGACAGGGTTTCTCTGTGTATCTGTCTGTGGCTGTCCTGG  50
      ||||||||| ||||| |||||||||| ||||| |||  ||||||||||| 
seq2  TTTTTTTTTGAGACA-GGTTTCTCTG-GTATC-GTC--TGGCTGTCCTG-  44

seq1  AACTTACTCTGTAGACCAGGATAGCCTAGAACTCACAGAGATCTACCTGC  100
       || |||| |||||| ||||||||| |   ||||| ||  ||||||||||
seq2  -AC-TACT-TGTAGA-CAGGATAGCTT--GACTCA-AGGAATCTACCTGC  87

seq1  CTCTGCTGCCTGATTACTAGGATTAGAGGTATGAGCCACCACTGCCTAGC  150
      ||||||||| ||||||||| ||||||| ||||||||||||||| ||||||
seq2  CTCTGCTGCTTGATTACTA-GATTAGAAGTATGAGCCACCACT-CCTAGC  135

seq1  ATGGGACACTGTTTTTTACAGTTGGCCCAGAGAAGGGGCAGCCTGGTATC  200
      ||||  ||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGGACCACTGTTTTTTACAGTT-GCCCAGAGAAGGGGCAGCCTGGTATC  184

seq1  TTGTGATACACAATACAAACCTTGGGACCCAGAGCTCCAGAGCCTGAAGG  250
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  TTGTGATACACAATACAAACC-TGGGACCCAGAGCTCCAGAG-CTGAAGG  232

seq1  TAGCTAGCTGTCTGTGACTCCACATCCCTCTCAGAGTGGACCCTGCCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGCTGTCTGTGACTCCACATCCCTCTCAGAGTGGACCCTGCCCAG  282

seq1  GTCCTCTGTTCCCCACCCATGAGAATCCAAGAGCCAGGGGCCCTTCCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGTTCCCCACCCATGAGAATCCAAGAGCCAGGGGCCCTTCCCTA  332

seq1  TGCACAGGGTGATCTAAAGCAGAGACAACAAGTGTTTCCATATAGGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGGGTGATCTAAAGCAGAGACAACAAGTGTTTCCATATAGGGACA  382

seq1  CAGAGGAAATATTTTGCCTGTCTGGGCTGCATCAGGTCTGTCATAGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAAATATTTTGCCTGTCTGGGCTGCATCAGGTCTGTCATAGTTCC  432

seq1  ACTCTGAAAGTAGCACAGATAAATGGCTGTATCTAGGAGCAGTAAAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAAAGTAGCACAGATAAATGGCTGTATCTAGGAGCAGTAAAACTT  482

seq1  GACATAGAAGAGTAGGCAGTAAAGCAGATTGGGCCCATTGCCTTCAGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAGAAGAGTAGGCAGTAAAGCAGATTGGGCCCATTGCCTTCAGGGC  532

seq1  CTCAGGAATCCCTAAAGAGCAGCTGGTCGCTTCTTCTGTGCCATGCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAATCCCTAAAGAGCAGCTGGTCGCTTCTTCTGTGCCATGCCAGG  582

seq1  CTAACCTCTGCTACAGCAAGCCCATGATGAGTCTAGAGCTCCTAGCGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTCTGCTACAGCAAGCCCATGATGAGTCTAGAGCTCCTAGCGTCC  632

seq1  TTTCAGAGCTGTAGGATTTTCTTTTTCTTGACAGATCACCTATGCTAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGCTGTAGGATTTTCTTTTTCTTGACAGATCACCTATGCTAAGA  682

seq1  ATGTTCTTAAAGAATCTGCAGGGAGAGTGTCCATAAGACTCCCTCCTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTAAAGAATCTGCAGGGAGAGTGTCCATAAGACTCCCTCCTGGA  732

seq1  CCCGTGATGGGCATGGCAGCTCAGCTGGGTATTCTGCTGTAAGCTTGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTGATGGGCATGGCAGCTCAGCTGGGTATTCTGCTGTAAGCTTGGTT  782

seq1  CATCTTCCTATACACTTTCTTTTTCCCTTTTTCTCTTCTGTGGCGCTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCTATACACTTTCTTTTTCCCTTTTTCTCTTCTGTGGCGCTGAG  832

seq1  GATGGGACACAGCCTTACATATACTGGGTACATGCTCTGCCACAGCATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGACACAGCCTTACATATACTGGGTACATGCTCTGCCACAGCATTA  882

seq1  TACCCCAGCCCTTCCCTGTGCCCTTCTAGGTGACTTATTAAGGCCCCGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCAGCCCTTCCCTGTGCCCTTCTAGGTGACTTATTAAGGCCCCGAA  932

seq1  CTTGCTGCTTGGCTGAAAGTATGGCTGCCATTTTTCTTTGTTATTGTTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGCTTGGCTGAAAGTATGGCTGCCATTTTTCTTTGTTATTGTTAA  982

seq1  TGTTCTCTAACTTCCTCTTTGAACCACAGTTGCCCCTTTACCTTCTCTAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTAACTTCCTCTTTGAACCACAGTTGCCCCTTTACCTTCTCTAG  1032

seq1  CATGTAGGAAAACTATCTCATTTCTTCAACTGTTTCCTACATCCCAATTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGGAAAACTATCTCATTTCTTCAACTGTTTCCTACATCCCAATTG  1082

seq1  TATTTTTTTCCCTCTGGAATTC  1122
      ||||||||||||||||||||||
seq2  TATTTTTTTCCCTCTGGAATTC  1104

seq1: chr5_33588213_33589018
seq2: B6Ng01-031E21.g_65_866

seq1  GAATTCCTGATCTTTCCAAGACTTTTATCATGAATGAGTGATCCTGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTTTCCAAGACTTTTATCATGAATGAGTGATCCTGGGGA  50

seq1  ACAGGAGGCCATCATGGCCATCTGTATAAGTTACTCAGGGCTCAGGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGGCCATCATGGCCATCTGTATAAGTTACTCAGGGCTCAGGTCTG  100

seq1  TGTGGTGGGTGGGAGTAGAGGAGCAAATGTGGACTCAACTTAGTGTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGGTGGGAGTAGAGGAGCAAATGTGGACTCAACTTAGTGTTGGT  150

seq1  TCAGGAAAGACTCAAGGTTCCCAGCTGGTCAGTGCATGATGGACCAGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAAGACTCAAGGTTCCCAGCTGGTCAGTGCATGATGGACCAGGCC  200

seq1  ACCCCCTATCTGGGCATCTGTAGAGGCCTCCAGGGCGTGGGTCCAAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTATCTGGGCATCTGTAGAGGCCTCCAGGGCGTGGGTCCAAGGTG  250

seq1  GGAAGAGGCCAGGCAGGAAGGGGGCCACAGGGCCAGCTGGGGAGTGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGCCAGGCAGGAAGGGGGCCACAGGGCCAGCTGGGGAGTGAACA  300

seq1  GTCCTGCTCCGAGGGATTAGAGGTCTCCTCTGGGCCCTGGGCTCAGGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTCCGAGGGATTAGAGGTCTCCTCTGGGCCCTGGGCTCAGGCCC  350

seq1  AGCAGACCAGATGGTTTTCTTTACACAGAGAGAGCCAAGAGTCAGAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACCAGATGGTTTTCTTTACACAGAGAGAGCCAAGAGTCAGAGGAG  400

seq1  GGACTGGCAGCTGGCCTTCCTCCATTCTTGCGTTTTAATAGTTGTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGCAGCTGGCCTTCCTCCATTCTTGCGTTTTAATAGTTGTTTTTT  450

seq1  GCTGGAAAATCCATTTCCAGAGTCACTCTGGGCTCTGAACCAGAGCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAAATCCATTTCCAGAGTCACTCTGGGCTCTGAACCAGAGCATCA  500

seq1  GGAAGAAGAGGGTGTTTCCTGGCCTCCTTGGGCCCATTCTGGGATCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGAGGGTGTTTCCTGGCCTCCTTGGGCCCATTCTGGGATCAGTG  550

seq1  TGAGGCCAGATTGAGGTGGCCACAAGAAGTGGCTGGCTACTGCTGTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCAGATTGAGGTGGCCACAAGAAGTGGCTGGCTACTGCTGTGCCC  600

seq1  CTGCCCAGGCTGCCCTAGAATGTCCACCCTCTCCCAACTACTTACCCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAGGCTGCCCTAGAATGTCCACCCTCTCCCAACTACTTACCCAAA  650

seq1  CAGAGGGGTTGAGAGAAGCCATAGAAGAGGATGGAGATAGGTCCCAGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGGTTGAGAGAAGCCATAGAAGAGGATGGAGATAGGTCCCAGGTC  700

seq1  CCTGAAACAGGTCCCTTTGTCTACACATCCTCGGGTCCTGCTTTGCTCCT  750
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTGAAACAGGTCCCTTTGTCTACACATCCTCGGGTCCTGC-TTGCTCCT  749

seq1  TGTCCAGCCTGCCCAAATGCTGCTCTGGGCCTGAAGATAAGCCTCTCACT  800
      ||| ||||||||||||||||||||||||| ||| |||||||||||| |||
seq2  TGT-CAGCCTGCCCAAATGCTGCTCTGGGTCTG-AGATAAGCCTCT-ACT  796

seq1  CCTGCT  806
      ||||||
seq2  CCTGCT  802