BAC Information

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BAC

Clone NameB6Ng01-031K24
Chromosome5 (Build37)
Map Location 103,653,112 - 103,784,678
singlet/doubletdoublet
Overlap gene4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049
Upstream geneLOC625780, Arhgap24, Mapk10, LOC666563
Downstream genePtpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031K24.bB6Ng01-031K24.g
ACCDH861231DH861232
length1,091877
definitionDH861231|Mus musculus domesticus DNA, BAC clone: B6Ng01-031K24, 5' end.DH861232|Mus musculus domesticus DNA, BAC clone: B6Ng01-031K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,653,112 - 103,654,210)(103,783,829 - 103,784,678)
sequence
gaattctcaaacaataattttttaaaaatcaattattctgaccagacaca
caaagtcattgtgaccctcattaggaacttcctcgagaaaaaccaactac
ttgattagcagctattccaagacatgctctaccacaagaaatagagaagt
atattcagagaaggaactagtctacaggaaaacagtgcgactaccattag
aattatgcagagctcttaggctgtaactgaaatgatttcatccacccagc
tactgagcagcatcggcattccaacactgtcttagagattacagggtttg
aagcttgatcccatagaaaagtctcaatcttatctcaagacagcctttta
cagatgcattcatgagtgtgtccaatgcagaatgaaagctataacgtctg
gtctagttcagaaaaagacaccatagccacgagcctatgctgaaaacatg
gtccttcggcctgtattcattcgggggaagctgcacagctaatcgcattg
taaatccttaccaatgaggtactggacaggcagtagccctctaaactgag
tttctgcgtcccagttgcatcagggtctagatatcatgataactgtgctc
tgacaccgcgtggaaagtcataaaaggatacttgagtgaggagtagaact
tgaacaattggagatttaaagtggaaatttctggtttctttggaggctga
gttaggttataatgatggtttgttggggcagacaggtgaaaggaatgctt
ggctacagcagacacaggtgaaaggatgttttgttatggcaaacacgtga
cagcgcgcatgatgtctagaaagagtataatatgaccccacagacaatgg
gagctcaagcattggtttgatttggtctgcctctctggtctttgctggag
gcaggcgtgtattggttcacctttcattgtgcccgtctgcggcactgtca
cagatctgaaggggcactagcctggctggagaggccaagagtacagctct
ctgagggaagccgaagcaaggtgggctgcctgtctcttctggccacctct
gcctggagtcggtgcccggaagtggctgggtcagctgctgg
gaattccttggaactgaacgtttctcctggaatttgttaactctagcttt
tgtttgctcacgagtgccagcctttgtgtgtgtgtgttgcttaggatacc
cctgatgcatatcgggtgcctctgccttctcccacttcctgtcgtgtctc
catctcttcctccttccttctccttgttttgggggttttatggttgatcc
agggttgtgcccatgtctgggaagtgccagtgagcactctttgtcctgtt
tttttgggaaggagtggtatatcggctcctccaggacaagaatcgtgtct
ctgctctgttcatccctcacgtgagagggagagctcagagtgcccagtgg
aacagacgatagaatagacatacttaaagaaatgaaaagaatgaattgaa
tgagcaattgttgactacttagtaaatagacttttaagactggaagaatt
ccaaagactagtatatttggatagctcagtaggcttgtgaattcaccaat
aagttcataggaagagcctcaggatattccatcgtctcttctctacctag
tttaattctgtgccttgtgatatgatgggaagatacctgtaaggcatccg
ggactctcacatcctaggcaagaacgtgtagttaggatgatgaaactatc
aagagaacattaaagctaaatgttccaaagactggaacattttgacactt
cttgttacattgttgagggccataaagtatggaagacacttggttatgca
gagaacaaaaaaatgtgattgggtgggggtcttaggagagggcagtggtc
agagcgcgtttgtaattatgaaaaacagctctaggaaataggcttagctg
tccgttcgagtgggtgccttacttagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_103653112_103654210
seq2: B6Ng01-031K24.b_45_1135

seq1  GAATTCTCAAACAATAATTTTTTAAAAATCAATTATTCTGACCAGACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAACAATAATTTTTTAAAAATCAATTATTCTGACCAGACACA  50

seq1  CAAAGTCATTGTGACCCTCATTAGGAACTTCCTCGAGAAAAACCAACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCATTGTGACCCTCATTAGGAACTTCCTCGAGAAAAACCAACTAC  100

seq1  TTGATTAGCAGCTATTCCAAGACATGCTCTACCACAAGAAATAGAGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAGCAGCTATTCCAAGACATGCTCTACCACAAGAAATAGAGAAGT  150

seq1  ATATTCAGAGAAGGAACTAGTCTACAGGAAAACAGTGCGACTACCATTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAGAGAAGGAACTAGTCTACAGGAAAACAGTGCGACTACCATTAG  200

seq1  AATTATGCAGAGCTCTTAGGCTGTAACTGAAATGATTTCATCCACCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGCAGAGCTCTTAGGCTGTAACTGAAATGATTTCATCCACCCAGC  250

seq1  TACTGAGCAGCATCGGCATTCCAACACTGTCTTAGAGATTACAGGGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGCAGCATCGGCATTCCAACACTGTCTTAGAGATTACAGGGTTTG  300

seq1  AAGCTTGATCCCATAGAAAAGTCTCAATCTTATCTCAAGACAGCCTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGATCCCATAGAAAAGTCTCAATCTTATCTCAAGACAGCCTTTTA  350

seq1  CAGATGCATTCATGAGTGTGTCCAATGCAGAATGAAAGCTATAACGTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCATTCATGAGTGTGTCCAATGCAGAATGAAAGCTATAACGTCTG  400

seq1  GTCTAGTTCAGAAAAAGACACCATAGCCACGAGCCTATGCTGAAAACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTTCAGAAAAAGACACCATAGCCACGAGCCTATGCTGAAAACATG  450

seq1  GTCCTTCGGCCTGTATTCATTCGGGGGAAGCTGCACAGCTAATCGCATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCGGCCTGTATTCATTCGGGGGAAGCTGCACAGCTAATCGCATTG  500

seq1  TAAATCCTTACCAATGAGGTACTGGACAGGCAGTAGCCCTCTAAACTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCTTACCAATGAGGTACTGGACAGGCAGTAGCCCTCTAAACTGAG  550

seq1  TTTCTGCGTCCCAGTTGCATCAGGGTCTAGATATCATGATAACTGTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCGTCCCAGTTGCATCAGGGTCTAGATATCATGATAACTGTGCTC  600

seq1  TGACACCGCGTGGAAAGTCATAAAAGGATACTTGAGTGAGGAGTAGAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCGCGTGGAAAGTCATAAAAGGATACTTGAGTGAGGAGTAGAACT  650

seq1  TGAACAATTGGAGATTTAAAGTGGAAATTTCTGGTTTCTTTGGAGGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAATTGGAGATTTAAAGTGGAAATTTCTGGTTTCTTTGGAGGCTGA  700

seq1  GTTAGGTTATAATGATGGTTTGTTGGGGCAGACAGGTG-AAGGAATGCTT  749
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTTAGGTTATAATGATGGTTTGTTGGGGCAGACAGGTGAAAGGAATGCTT  750

seq1  GGCTACAGCAGACACAGGTGAAAGGATGTTTTGTTATGGCAAACACGTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAGCAGACACAGGTGAAAGGATGTTTTGTTATGGCAAACACGTGA  800

seq1  CAGCGCGCATGATGTCTAGAAAGAGTATAAATATGACCCCACAGACAATG  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAGCGCGCATGATGTCTAGAAAGAGTAT-AATATGACCCCACAGACAATG  849

seq1  GGAGCTCAAGCATTGGTTTGATTTGGTCTGCCTCTCTGGTCTTTGCTGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCAAGCATTGGTTTGATTTGGTCTGCCTCTCTGGTCTTTGCTGGA  899

seq1  GGCAGGCGTGTATTGGTTCACCTTTCATTGTGCCCGTCTGCGGGCACTGT  949
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGCAGGCGTGTATTGGTTCACCTTTCATTGTGCCCGTCTGC-GGCACTGT  948

seq1  CCACAGGATCTGAAGGGGCACTAGCCTGGCTGGAGAGGCCAAAGAGTTAC  999
       |||| |||||||||||||||||||||||||||||||||| ||||| |||
seq2  -CACA-GATCTGAAGGGGCACTAGCCTGGCTGGAGAGGCC-AAGAG-TAC  994

seq1  AGCTCTCTGAGGGGAAGCCGAAGCAAGGTGGGCTGCCTGGTCTCTTCCGT  1049
      |||||||||| ||||||||||||||||||||||||||| |||||||| | 
seq2  AGCTCTCTGA-GGGAAGCCGAAGCAAGGTGGGCTGCCT-GTCTCTTCTG-  1041

seq1  GCCACCTCTGCCTTGGAGTCGGTAGCCGGAAGTGGCTGTGGTCAG--GCT  1097
      |||||||||||| ||||||||||  ||||||||||||| ||||||  |||
seq2  GCCACCTCTGCC-TGGAGTCGGTGCCCGGAAGTGGCTG-GGTCAGCTGCT  1089

seq1  GG  1099
      ||
seq2  GG  1091

seq1: chr5_103783829_103784678
seq2: B6Ng01-031K24.g_69_920 (reverse)

seq1  GACAGCTAAGCCTTATTCCTAG-GCTGCTCTTTCATACTAACAAACGCGC  49
      |||||||||||||  ||||||| |||| | ||||||| | ||||||||||
seq2  GACAGCTAAGCCTATTTCCTAGAGCTG-TTTTTCATAATTACAAACGCGC  49

seq1  TCTGACCACTGCCCTCTCCT-AGA-CACCACCC-ATCACATTTTTTTGTT  96
      |||||||||||||||||||| ||| | |||||| ||||||||||||||||
seq2  TCTGACCACTGCCCTCTCCTAAGACCCCCACCCAATCACATTTTTTTGTT  99

seq1  CTCTGCATAACCAAGTGTCTTCCATACTTTATGGCCCCTCAACAATGTAA  146
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCTGCATAACCAAGTGTCTTCCATACTTTATGG-CCCTCAACAATGTAA  148

seq1  CAAGAAGTGTTCAAATGTTCCAGTCTTTGGAACATTTAGCTTTAATGTTC  196
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTGTCAAAATGTTCCAGTCTTTGGAACATTTAGCTTTAATGTTC  198

seq1  TCTTGATAGTTTCATCATCCTAACTACACGTTCTTGCCTAGGATGTGAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATAGTTTCATCATCCTAACTACACGTTCTTGCCTAGGATGTGAGA  248

seq1  GTCCCGGATGCCTTACAGGTATCTTCCCATCATATCACAAGGCACAGAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGGATGCCTTACAGGTATCTTCCCATCATATCACAAGGCACAGAAT  298

seq1  TAAACTAGGTAGAGAAGAGACGATGGAATATCCTGAGGCTCTTCCTATGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTAGGTAGAGAAGAGACGATGGAATATCCTGAGGCTCTTCCTATGA  348

seq1  ACTTATTGGTGAATTCACAAGCCTACTGAGCTATCCAAATATACTAGTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTGGTGAATTCACAAGCCTACTGAGCTATCCAAATATACTAGTCT  398

seq1  TTGGAATTCTTCCAGTCTTAAAAGTCTATTTACTAAGTAGTCAACAATTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTCTTCCAGTCTTAAAAGTCTATTTACTAAGTAGTCAACAATTG  448

seq1  CTCATTCAATTCATTCTTTTCATTTCTTTAAGTATGTCTATTCTATCGTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCAATTCATTCTTTTCATTTCTTTAAGTATGTCTATTCTATCGTC  498

seq1  TGTTCCACTGGGCACTCTGAGCTCTCCCTCTCACGTGAGGGATGAACAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCACTGGGCACTCTGAGCTCTCCCTCTCACGTGAGGGATGAACAGA  548

seq1  GCAGAGACACGATTCTTGTCCTGGAGGAGCCGATATACCACTCCTTCCCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACACGATTCTTGTCCTGGAGGAGCCGATATACCACTCCTTCCCA  598

seq1  AAAAAACAGGACAAAGAGTGCTCACTGGCACTTCCCAGACATGGGCACAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAGGACAAAGAGTGCTCACTGGCACTTCCCAGACATGGGCACAA  648

seq1  CCCTGGATCAACCATAAAACCCCCAAAACAAGGAGAAGGAAGGAGGAAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATCAACCATAAAACCCCCAAAACAAGGAGAAGGAAGGAGGAAGA  698

seq1  GATGGAGACACGACAGGAAGTGGGAGAAGGCAGAGGCACCCGATATGCAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGACACGACAGGAAGTGGGAGAAGGCAGAGGCACCCGATATGCAT  748

seq1  CAGGGGTATCCTAAGCAACACACACACACAAAGGCTGGCACTCGTGAGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTATCCTAAGCAACACACACACACAAAGGCTGGCACTCGTGAGCA  798

seq1  AACAAAAGCTAGAGTTAACAAATTCCAGGAGAAACGTTCAGTTCCAAGGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAGCTAGAGTTAACAAATTCCAGGAGAAACGTTCAGTTCCAAGGA  848

seq1  ATTC  850
      ||||
seq2  ATTC  852