BAC Information

Click to search

BAC

Clone NameB6Ng01-031L16
Chromosome5 (Build37)
Map Location 17,826,460 - 17,827,534
singlet/doubletsinglet
Overlap geneGnai1
Upstream geneLOC668142, LOC100041749, LOC100041832, Speer4f, EG630927, Sema3c, Cd36, Gnat3
Downstream geneLOC100041818, LOC668167, 4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031L16.bB6Ng01-031L16.g
ACCDH861261DH861262
length1,2431,059
definitionDH861261|Mus musculus domesticus DNA, BAC clone: B6Ng01-031L16, 5' end.DH861262|Mus musculus domesticus DNA, BAC clone: B6Ng01-031L16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactaaggaataccaaatggctgagaagcacctaaaaaactg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tctacctcacaccagtcagaatggctaagataaaaaactcaggtgacagc
agacgctggcgaggatgtagagaaagagaaacactcctccattgttggtg
ggattgtaagctggtacaaccaccctgggaatcagtttggtagttcctca
gaaaattggatgtagtattaccagaagatcgagcaataccactcctgggc
atatacccagaagatgctctaacttgtagtaaggacataagctccactat
gttcatagcagtcttatttataataaccagaagctggaaagaacccagat
gtccttcaacagaggaatggatatagaaaatgtggtacatttacacaatg
gattactactcagcaattaaaaacaatgattttatgaaattcttagataa
atggatgaatctggaggatattatccttagtgaggtaactcaatcacaaa
agaagacacataatatgcacttactgataagtggatattagcccagaagc
tcagaatacctaagatacaatttgcaaaacacatgaagaaaagaaagaag
accaaagtgccaggcatggtggcacaagcctttaatcccagcagaggcag
gcagatttctgagtttgaggccagcctggtctctggtctacaaagtgagt
tctaggacagccagggttatacagagaaaccctgtctcaaaaaacaaaca
aacaaacaaacaaacagacaaagtgtggatacttccatctttctagaggc
agaacaaaatacccatggaggagttacagagactaagttcagagcagaga
gtgaggatgaccatccagagactgtctcacctgggattcatcccataaca
cacctaactagaaagtactgcagaacacagagctgctgacgaagctataa
tctgtctctgaagctctgcagtgctgacaaatacagagtggatgatgctc
aagctcatgacaggagcacaggtctcatgaaggcctaagaagtacattga
ctgaggggtggcagccctgaggaaccaatgactacattgactccgagtcc
tggctaacgcaataagaaaactgatcagctactaggatgaagtcaatcgt
tcatagaggaagccttgtctcttgaaggtcatgtgtcgacctg
gaattcttaatgtaacaatgagacagagggaaaggaaagacgggagcatg
gggctatgtatgctgcaaatactttggttacttcccacgtctaggagtct
ctagctgctttgtgatgcatctctacatacctagtaaatttatttttgtg
tcttagtttaaaccaagggcagttggaacagcatgttgtagccatggaga
tgtaagcgatgagaactttggagtttcctcttttgttaggaaagggcatt
tgttttatttcttctactttctacttccactcattgcaaagctcacatga
agatggagtcggcttacaattcagatgatagccacattatgaagaaggca
gagcaaaagagtaatgtccatgtctctttctaaatatccttcaaaagtca
tatcttaacaactaggattgcaagagttaatttgcattatagctttcatg
tagaaggaaatatcatctgaatttagtttataatcagatcgtcacctgct
gtttagtagaagaaaactaaaaacaatatttaaaaattgaaattaattac
cagagccttggtaaagcccagttatttgaacagtcaattaatgtaatatt
gcagcaaaaaccattgtgtatatgttgcctgcgccttaccatatcactag
taaggaagatggaaggtagctttgaaggagaaaaaagtgacttgagtttt
tgtttattttgttgttgttgttgtttttgttttcatcagggatatcctgc
cctgcacctagcatttgatctgcagggcctgctctggtcttgggaggtta
tctaaggtctctggtgctgtggcacaaggttgctcagagcctgcctgcct
gtcttagctccctctaagtatggtcttcaagctctgcactgttcagcctt
gatgtagctgtcccttctgctgccatgatgcaccatgcagcggctcagtg
ctgcactcacttatcatagtttctgaaatgaggctgccctgatgaaactg
acctgaagctccgtgtctgaccacgcattactgtttttgacagttgatca
gttgggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17826460_17827534
seq2: B6Ng01-031L16.g_67_1125 (reverse)

seq1  ATTCCAAACTGATCAAACTGAGTCCAAAAACAGTAAATGGCGTGGTCAG-  49
      ||||| |||||||| |||||    ||||||||||||   |||||||||| 
seq2  ATTCCCAACTGATC-AACTG---TCAAAAACAGTAA--TGCGTGGTCAGA  44

seq1  CACAGAGCCTCAGGGTTCAGTTTTTCCATTCAGGGCAGCCCTCACTTTCA  99
      ||| |||| |||||  |||||||   || ||||||||| ||||| |||||
seq2  CACGGAGCTTCAGG--TCAGTTT---CA-TCAGGGCAG-CCTCA-TTTCA  86

seq1  GAAACTATGATAAGTGAGTTGGCAGCCACTGAGCCGCTGCATGGTGCATC  149
      |||||||||||||||||||  |||| ||||||||||||||||||||||||
seq2  GAAACTATGATAAGTGAGT--GCAG-CACTGAGCCGCTGCATGGTGCATC  133

seq1  ATGGCAGCAGAAGGGACAGCTACATCAAGGCTGAACAGTGCAAGAGCTTG  199
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGGCAGCAGAAGGGACAGCTACATCAAGGCTGAACAGTGC-AGAGCTTG  182

seq1  AAGACCATACTTAGAGGGAGCTAAGACAGGCAGGCAGGCTCTGAGCAACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCATACTTAGAGGGAGCTAAGACAGGCAGGCAGGCTCTGAGCAACC  232

seq1  TTGTGCCACAGCACCAGAGACCTTAGATAACCT-CCAAGACCAGAGCAGG  298
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTGTGCCACAGCACCAGAGACCTTAGATAACCTCCCAAGACCAGAGCAGG  282

seq1  CCCTGCAGATCAAATGCTAGGTGCAGGGCAGGATATCCCTGATGAAAACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAGATCAAATGCTAGGTGCAGGGCAGGATATCCCTGATGAAAACA  332

seq1  AAAACAACAACAACAACAAAATAAACAAAAACTCAAGTCACTTTTTTCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAACAACAACAAAATAAACAAAAACTCAAGTCACTTTTTTCTC  382

seq1  CTTCAAAGCTACCTTCCATCTTCCTTACTAGTGATATGGTAAGGCGCAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGCTACCTTCCATCTTCCTTACTAGTGATATGGTAAGGCGCAGG  432

seq1  CAACATATACACAATGGTTTTTGCTGCAATATTACATTAATTGACTGTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATATACACAATGGTTTTTGCTGCAATATTACATTAATTGACTGTTC  482

seq1  AAATAACTGGGCTTTACCAAGGCTCTGGTAATTAATTTCAATTTTTAAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTGGGCTTTACCAAGGCTCTGGTAATTAATTTCAATTTTTAAAT  532

seq1  ATTGTTTTTAGTTTTCTTCTACTAAACAGCAGGTGACGATCTGATTATAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTAGTTTTCTTCTACTAAACAGCAGGTGACGATCTGATTATAA  582

seq1  ACTAAATTCAGATGATATTTCCTTCTACATGAAAGCTATAATGCAAATTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATTCAGATGATATTTCCTTCTACATGAAAGCTATAATGCAAATTA  632

seq1  ACTCTTGCAATCCTAGTTGTTAAGATATGACTTTTGAAGGATATTTAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGCAATCCTAGTTGTTAAGATATGACTTTTGAAGGATATTTAGAA  682

seq1  AGAGACATGGACATTACTCTTTTGCTCTGCCTTCTTCATAATGTGGCTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATGGACATTACTCTTTTGCTCTGCCTTCTTCATAATGTGGCTAT  732

seq1  CATCTGAATTGTAAGCCGACTCCATCTTCATGTGAGCTTTGCAATGAGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAATTGTAAGCCGACTCCATCTTCATGTGAGCTTTGCAATGAGTG  782

seq1  GAAGTAGAAAGTAGAAGAAATAAAACAAATGCCCTTTCCTAACAAAAGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAAAGTAGAAGAAATAAAACAAATGCCCTTTCCTAACAAAAGAG  832

seq1  GAAACTCCAAAGTTCTCATCGCTTACATCTCCATGGCTACAACATGCTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCCAAAGTTCTCATCGCTTACATCTCCATGGCTACAACATGCTGT  882

seq1  TCCAACTGCCCTTGGTTTAAACTAAGACACAAAAATAAATTTACTAGGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTGCCCTTGGTTTAAACTAAGACACAAAAATAAATTTACTAGGTA  932

seq1  TGTAGAGATGCATCACAAAGCAGCTAGAGACTCCTAGACGTGGGAAGTAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGATGCATCACAAAGCAGCTAGAGACTCCTAGACGTGGGAAGTAA  982

seq1  CCAAAGTATTTGCAGCATACATAGCCCCATGCTCCCGTCTTTCCTTTCCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTATTTGCAGCATACATAGCCCCATGCTCCCGTCTTTCCTTTCCC  1032

seq1  TCTGTCTCATTGTTACATTAAGAATTC  1075
      |||||||||||||||||||||||||||
seq2  TCTGTCTCATTGTTACATTAAGAATTC  1059