BAC Information

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BAC

Clone NameB6Ng01-032E05
Chromosome5 (Build37)
Map Location 78,355,304 - 78,443,793
singlet/doubletdoublet
Overlap genenone
Upstream genePpat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
Downstream geneLOC100039398, Mthfr-ps1, EG384187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032E05.bB6Ng01-032E05.g
ACCDH861651DH861652
length9001,112
definitionDH861651|Mus musculus domesticus DNA, BAC clone: B6Ng01-032E05, 5' end.DH861652|Mus musculus domesticus DNA, BAC clone: B6Ng01-032E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,442,895 - 78,443,793)(78,355,304 - 78,356,435)
sequence
gaattcatgggaatcctttaaaactgaaatgggtagcctcaattcaaaga
aagaaaatatggccctatctgtcctaaatcttaaggatcaagatgacata
cacttcagtcacaaataaaattttaattctctgtagctaaagcttaacaa
gaagtgtgggggtctagtgatttactgtcatatatatatatatatatata
tatatatatatatatatatatatatatatatatacacacacacataatac
acacacacatatataaacataaattctcctagtctttaagcctgactcgt
ttgaaatcaagcacagtagtaaatctttgatgatatcgcaaatgcagatt
gctgtctagcctttccaatcactgtaaaatcaacccagcactgagtcccc
acaggctcagattcacacaattaagtaattaattcttctcccacatgcac
aattgtcagtgttcaaaagtcttcatagtgcagtgttcacaaattatctt
ttaaaattcagggagctaaaaactgaaggcacaaagaaaaaatgccaaca
gccgtaaagagtagaatctattctacctgaccagctatgtgtcaaagaat
taatgcctattccaacagataagcatgaactagtgcataaaaatctggct
gttgaaaattataaagattgttaagcaataatcaaaaaagctctgccaga
tcctgaccaatacagatgcggatgctcacagccaaccactggactaagca
cagggaccccatagaggagttagggaaaagactgaaagagccgaagggat
cttatctggcatcaacggggaggggaggcccttggtcctatgaaggttta
tgtcccagtgtaggggtatgctaagggcattgaggtaagagtgggtaggg

gaattctatctctgaacacataggtcagtgcaggtctcagatatcaccag
gtaagtttctgtggagtaggtagtggctagtacagaagctcaggattggt
tacaacagagagcaaatgcccacggagtgctaatccttaagtgagacatc
tgtacatctcccgttccaccctttataaagaaaacagacattaagttaag
agagaagagggggcatggccctgggaggagttagagagcaagtagggact
agcatgatcaaaatacattgtatgcatatatgacaatctcaaagagttaa
taaaaatattacatttttaaaatatagatttatttcaaaataatataggc
aaaacatgtgtaatttgggagcacagtgacacgtgactttgggaaaaatg
tttctttaagaaagtgaacaacatcagaaaacaatttaaaactttatata
aaatgagggagtaaagcattgcctaaatgaactgttctcctatttggtta
gctgtctgtagaattaggcagggacctggtggatggctaatgtgtaggca
gaagatgtctcatcctcaggcacactgaaatgccagaaagtgggttttat
agtttcagttcattccatggctgtgggtgcctcaaagtgctcttcaaatt
gtgttccacagttttcagaagcatctttgaatgcagcagctctttgaaat
taagtgatttcgacaccgaagcttctgtaaagcaggctgagaatttctta
agccataaattggaaacaggcttctctctggcaaaccccctttagaattc
tagtgcaagctctgaaaggacatggtggatagctcctctgtgaagattct
cacagccctggggccagagcacagagaagataatgtcctccaggctctag
atcgccgagtctggctttcttgggtactcaatgctctctaacatctcgga
gatttgttatgtctcctaataagaaggtctttcagcttggctcaccccta
acctctcttcagcatccattctctaacctacttcaatatttttgatgtaa
aaggtgaggacccaggagactagcacaaccaggaggctctatgagctcca
caacttaaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_78442895_78443793
seq2: B6Ng01-032E05.b_47_945 (reverse)

seq1  CCTACCCACTCCTACCTCACTGCCC-TAGCATACCCCTACACTGGGACAT  49
      ||||||||||| ||||||| ||||| ||||||||||||||||||||||||
seq2  CCTACCCACTCTTACCTCAATGCCCTTAGCATACCCCTACACTGGGACAT  50

seq1  CAAGCCTTCATAGGACCAAGGGCCTCCCCT-CCCGTTGATGCCAGATAAG  98
       || |||||||||||||||||||||||||| |||||||||||||||||||
seq2  -AAACCTTCATAGGACCAAGGGCCTCCCCTCCCCGTTGATGCCAGATAAG  99

seq1  GTCCCTTCGGCTCCTTCAGTCTTTTCCCTAACTCCTCTATTGGGGTCCCT  148
       |||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  ATCCCTTCGGCTCTTTCAGTCTTTTCCCTAACTCCTCTA-TGGGGTCCCT  148

seq1  GTGCTTAGTCCAGTGGTTGGCTGTGAGCATCCGCATCTGTATTGGTCAGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAGTCCAGTGGTTGGCTGTGAGCATCCGCATCTGTATTGGTCAGG  198

seq1  ATCTGGCAGAGCTTTTTTGATTATTGCTTAACAATCTTTATAATTTTCAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCAGAGCTTTTTTGATTATTGCTTAACAATCTTTATAATTTTCAA  248

seq1  CAGCCAGATTTTTATGCACTAGTTCATGCTTATCTGTTGGAATAGGCATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGATTTTTATGCACTAGTTCATGCTTATCTGTTGGAATAGGCATT  298

seq1  AATTCTTTGACACATAGCTGGTCAGGTAGAATAGATTCTACTCTTTACGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTGACACATAGCTGGTCAGGTAGAATAGATTCTACTCTTTACGG  348

seq1  CTGTTGGCATTTTTTCTTTGTGCCTTCAGTTTTTAGCTCCCTGAATTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGCATTTTTTCTTTGTGCCTTCAGTTTTTAGCTCCCTGAATTTTA  398

seq1  AAAGATAATTTGTGAACACTGCACTATGAAGACTTTTGAACACTGACAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAATTTGTGAACACTGCACTATGAAGACTTTTGAACACTGACAAT  448

seq1  TGTGCATGTGGGAGAAGAATTAATTACTTAATTGTGTGAATCTGAGCCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGTGGGAGAAGAATTAATTACTTAATTGTGTGAATCTGAGCCTG  498

seq1  TGGGGACTCAGTGCTGGGTTGATTTTACAGTGATTGGAAAGGCTAGACAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACTCAGTGCTGGGTTGATTTTACAGTGATTGGAAAGGCTAGACAG  548

seq1  CAATCTGCATTTGCGATATCATCAAAGATTTACTACTGTGCTTGATTTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGCATTTGCGATATCATCAAAGATTTACTACTGTGCTTGATTTCA  598

seq1  AACGAGTCAGGCTTAAAGACTAGGAGAATTTATGTTTATATATGTGTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGTCAGGCTTAAAGACTAGGAGAATTTATGTTTATATATGTGTGTG  648

seq1  TGTATTATGTGTGTGTGTATATATATATATATATATATATATATATATAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATGTGTGTGTGTATATATATATATATATATATATATATATATAT  698

seq1  ATATATATATATATATATATATGACAGTAAATCACTAGACCCCCACACTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATGACAGTAAATCACTAGACCCCCACACTT  748

seq1  CTTGTTAAGCTTTAGCTACAGAGAATTAAAATTTTATTTGTGACTGAAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAAGCTTTAGCTACAGAGAATTAAAATTTTATTTGTGACTGAAGT  798

seq1  GTATGTCATCTTGATCCTTAAGATTTAGGACAGATAGGGCCATATTTTCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCATCTTGATCCTTAAGATTTAGGACAGATAGGGCCATATTTTCT  848

seq1  TTCTTTGAATTGAGGCTACCCATTTCAGTTTTAAAGGATTCCCATGAATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGAATTGAGGCTACCCATTTCAGTTTTAAAGGATTCCCATGAATT  898

seq1  C  899
      |
seq2  C  899

seq1: chr5_78355304_78356435
seq2: B6Ng01-032E05.g_68_1179

seq1  GAATTCTATCTCTGAACACATAGGTCAGTGCAGGTCTCAGATATCACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCTCTGAACACATAGGTCAGTGCAGGTCTCAGATATCACCAG  50

seq1  GTAAGTTTCTGTGGAGTAGGTAGTGGCTAGTACAGAAGCTCAGGATTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTTCTGTGGAGTAGGTAGTGGCTAGTACAGAAGCTCAGGATTGGT  100

seq1  TACAACAGAGAGCAAATGCCCACGGAGTGCTAATCCTTAAGTGAGACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGAGAGCAAATGCCCACGGAGTGCTAATCCTTAAGTGAGACATC  150

seq1  TGTACATCTCCCGTTCCACCCTTTATAAAGAAAACAGACATTAAGTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATCTCCCGTTCCACCCTTTATAAAGAAAACAGACATTAAGTTAAG  200

seq1  AGAGAAGAGGGGGCATGGCCCTGGGAGGAGTTAGAGAGCAAGTAGGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAGGGGGCATGGCCCTGGGAGGAGTTAGAGAGCAAGTAGGGACT  250

seq1  AGCATGATCAAAATACATTGTATGCATATATGACAATCTCAAAGAGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGATCAAAATACATTGTATGCATATATGACAATCTCAAAGAGTTAA  300

seq1  TAAAAATATTACATTTTTAAAATATAGATTTATTTCAAAATAATATAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATTACATTTTTAAAATATAGATTTATTTCAAAATAATATAGGC  350

seq1  AAAACATGTGTAATTTGGGAGCACAGTGACACGTGACTTTGGGAAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGTGTAATTTGGGAGCACAGTGACACGTGACTTTGGGAAAAATG  400

seq1  TTTCTTTAAGAAAGTGAACAACATCAGAAAACAATTTAAAACTTTATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAAGAAAGTGAACAACATCAGAAAACAATTTAAAACTTTATATA  450

seq1  AAATGAGGGAGTAAAGCATTGCCTAAATGAACTGTTCTCCTATTTGGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGGAGTAAAGCATTGCCTAAATGAACTGTTCTCCTATTTGGTTA  500

seq1  GCTGTCTGTAGAATTAGGCAGGGACCTGGTGGATGGCTAATGTGTAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTGTAGAATTAGGCAGGGACCTGGTGGATGGCTAATGTGTAGGCA  550

seq1  GAAGATGTCTCATCCTCAGGCACACTGAAATGCCAGAAAGTGGGTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTCTCATCCTCAGGCACACTGAAATGCCAGAAAGTGGGTTTTAT  600

seq1  AGTTTCAGTTCATTCCATGGCTGTGGGTGCCTCAAAGTGCTCTTCAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGTTCATTCCATGGCTGTGGGTGCCTCAAAGTGCTCTTCAAATT  650

seq1  GTGTTCCACAGTTTTCAGAAGCATCTTTGAATGCAGCAGCTCTTTGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCACAGTTTTCAGAAGCATCTTTGAATGCAGCAGCTCTTTGAAAT  700

seq1  TAAGTGATTTCGACACCGAAGCTTCTGTAAAGCAGGCTGAGAATTTCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGATTTCGACACCGAAGCTTCTGTAAAGCAGGCTGAGAATTTCTTA  750

seq1  AGCCATAAATTGGAAACAGGCTTCTCTCTGGCAAAACCCCCTTTAAGAAT  800
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  AGCCATAAATTGGAAACAGGCTTCTCTCTGGC-AAACCCCCTTT-AGAAT  798

seq1  TCTAGTGCAAGCTCTGAAAGGACATGGTGGATAGCTCCTCTGTGAAGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGCAAGCTCTGAAAGGACATGGTGGATAGCTCCTCTGTGAAGATT  848

seq1  CTCACAGCCCTGGGGCCAGAGCACAGAGAAGATAATGTCCTCCAGGCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCCCTGGGGCCAGAGCACAGAGAAGATAATGTCCTCCAGGCTCT  898

seq1  AGATCGCCGAGTCTGGCTTTCTTGGGTACTCAATGCTTCTCTAACATCTC  950
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGATCGCCGAGTCTGGCTTTCTTGGGTACTCAATGC-TCTCTAACATCTC  947

seq1  GGAGATTTGTTATGTCTCCTAATAAAGAGG-CTTTCAGCTAGGCTTCACC  999
      |||||||||||||||||||||||||  ||| ||||||||| ||| |||||
seq2  GGAGATTTGTTATGTCTCCTAATAAGAAGGTCTTTCAGCTTGGC-TCACC  996

seq1  CCTAACCTCTCTTCAGCATACACATTCCTCAACCCAACTTCAAAATATTT  1049
      ||||||||||||||||||| ||   | ||| | || |||||  |||||||
seq2  CCTAACCTCTCTTCAGCATCCA---TTCTCTAACCTACTTC--AATATTT  1041

seq1  CTGATGTAAAAGGGTGGAGGACACCAGGAGATCACAGCCAACAACCAGGA  1099
       ||||||||||||   |||||| ||||||||    |||  ||||||||||
seq2  TTGATGTAAAAGG--TGAGGAC-CCAGGAGA--CTAGC--ACAACCAGGA  1084

seq1  AGGGCTCATAGGAGCTCACACAAACTAAAATGG  1132
        ||||| || |||||| ||| |||| ||||||
seq2  --GGCTC-TATGAGCTC-CAC-AACTTAAATGG  1112