BAC Information

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BAC

Clone NameB6Ng01-032K09
Chromosome5 (Build37)
Map Location 149,688,103 - 149,865,919
singlet/doubletdoublet
Overlap geneKatnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1
Upstream geneSlc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3, 2210417A02Rik, LOC100041869
Downstream geneEG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089, Rxfp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032K09.bB6Ng01-032K09.g
ACCDH861914DH861915
length807440
definitionDH861914|Mus musculus domesticus DNA, BAC clone: B6Ng01-032K09, 5' end.DH861915|Mus musculus domesticus DNA, BAC clone: B6Ng01-032K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,688,103 - 149,688,909)(149,865,474 - 149,865,919)
sequence
gaattcactcggacaaccggatccttctacggcaaagcttttattgcttc
aacataaggaagaccccgaacccagaaaatggcgctgcttatatagcccg
cagcgtgacgtttcagcacctgatgtggtgtgacagcacctgattagttg
ctcgcctatcaccccattactacgccccgagatgggcagtgactgggcgt
gaattcactcttgcacttgcgcataaggcttgtttactagttaggcgcag
tggaagccagcgtcatcttataatggtgattgctcacggcacggctctcc
acatccagtcacatctggaagttccaggagaggttcaaaatggatgcaaa
agctggagagatggctcagttggaatagtgctggctctctaagcatgagg
accagggaggggttcaattcctaaaccccccaaaatgctgggtatactgg
catacgcttgtcatcctagctctggggaggtgaaaacagaaatcccttgg
gggcctgttggccagctagcctagcctacttggcaagcctaaggccattg
agagatcttgtctccaaaaccagggtgaggcgaggaatgatggtacacac
atttagtccagtatccagaaggcagaagcaggcagacctgtatgatttgg
gctctaacttggttaacatagccagctagagatacagtgagaccctgaaa
aaaagcaagcaaagcaacccacccttagtcaccaaccatataaaacaaac
tcaggtggccagcacctgaaaaacaacatccaagattgatctctggtctc
caagtgc
tttgtttcttagttgagaagtgtataggagccaggattttaaaaaaaaaa
aatgggggacatttgttttgaagtgaagagaggtgctgtgctcaccagaa
agaaagagctgttagattcatcaaagattgatggaagcctgtggccttta
gagccagcctggctatttttctctgcatacctaagaatgatcagccaact
tgaagagcaggaaaaagcatggcctgtgggtttgggcccaagcactctcc
gactgcttctaatccctcaggtaacagtagccctaaatgtctggtaaccc
tagagcaggtacatgtatgcactaagtggtgtgatcggaggcaagatagc
aatcacaaagattcattttattctaacagtaatccacaccgagtcacaga
aaacagcgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_149688103_149688909
seq2: B6Ng01-032K09.b_43_849

seq1  GAATTCACTCGGACAACCGGATCCTTCTACGGCAAAGCTTTTATTGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCGGACAACCGGATCCTTCTACGGCAAAGCTTTTATTGCTTC  50

seq1  AACATAAGGAAGACCCCGAACCCAGAAAATGGCGCTGCTTATATAGCCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGGAAGACCCCGAACCCAGAAAATGGCGCTGCTTATATAGCCCG  100

seq1  CAGCGTGACGTTTCAGCACCTGATGTGGTGTGACAGCACCTGATTAGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTGACGTTTCAGCACCTGATGTGGTGTGACAGCACCTGATTAGTTG  150

seq1  CTCGCCTATCACCCCATTACTACGCCCCGAGATGGGCAGTGACTGGGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCCTATCACCCCATTACTACGCCCCGAGATGGGCAGTGACTGGGCGT  200

seq1  GAATTCACTCTTGCACTTGCGCATAAGGCTTGTTTACTAGTTAGGCGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTGCACTTGCGCATAAGGCTTGTTTACTAGTTAGGCGCAG  250

seq1  TGGAAGCCAGCGTCATCTTATAATGGTGATTGCTCACGGCACGGCTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCAGCGTCATCTTATAATGGTGATTGCTCACGGCACGGCTCTCC  300

seq1  ACATCCAGTCACATCTGGAAGTTCCAGGAGAGGTTCAAAATGGATGCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAGTCACATCTGGAAGTTCCAGGAGAGGTTCAAAATGGATGCAAA  350

seq1  AGCTGGAGAGATGGCTCAGTTGGAATAGTGCTGGCTCTCTAAGCATGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGAGAGATGGCTCAGTTGGAATAGTGCTGGCTCTCTAAGCATGAGG  400

seq1  ACCAGGGAGGGGTTCAATTCCTAAACCCCCCAAAATGCTGGGTATACTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGAGGGGTTCAATTCCTAAACCCCCCAAAATGCTGGGTATACTGG  450

seq1  CATACGCTTGTCATCCTAGCTCTGGGGAGGTGAAAACAGAAATCCCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGCTTGTCATCCTAGCTCTGGGGAGGTGAAAACAGAAATCCCTTGG  500

seq1  GGGCCTGTTGGCCAGCTAGCCTAGCCTACTTGGCAAGCCTAAGGCCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGTTGGCCAGCTAGCCTAGCCTACTTGGCAAGCCTAAGGCCATTG  550

seq1  AGAGATCTTGTCTCCAAAACCAGGGTGAGGCGAGGAATGATGGTACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTTGTCTCCAAAACCAGGGTGAGGCGAGGAATGATGGTACACAC  600

seq1  ATTTAGTCCAGTATCCAGAAGGCAGAAGCAGGCAGACCTGTATGATTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTCCAGTATCCAGAAGGCAGAAGCAGGCAGACCTGTATGATTTGG  650

seq1  GCTCTAACTTGGTTAACATAGCCAGCTAGAGATACAGTGAGACCCTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAACTTGGTTAACATAGCCAGCTAGAGATACAGTGAGACCCTGAAA  700

seq1  AAAAGCAAAGCAAAGCAACCCACCCTTAGTCACCAACCATAT-AAACAAA  749
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAAGC-AAGCAAAGCAACCCACCCTTAGTCACCAACCATATAAAACAAA  749

seq1  CTCAGGTGGCCAGCACCTGAGAAACAACATCCAAGATTGATCTCTGGTCT  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTCAGGTGGCCAGCACCTGAAAAACAACATCCAAGATTGATCTCTGGTCT  799

seq1  CCAAGTGC  807
      ||||||||
seq2  CCAAGTGC  807

seq1: chr5_149865474_149865919
seq2: B6Ng01-032K09.g_68_513 (reverse)

seq1  CACACACACACACACACACACACACACACAGACGCTGTTTTCTGTGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACAGACGCTGTTTTCTGTGACTC  50

seq1  GGTGTGGATTACTGTTAGAATCAAATGAATCTTTGTGATTGCTATCTTGC  100
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGTGTGGATTACTGTTAGAATAAAATGAATCTTTGTGATTGCTATCTTGC  100

seq1  CTCCGATCACACCACTTAGTGCATACATGTACCTGCTCTAGGGTTACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGATCACACCACTTAGTGCATACATGTACCTGCTCTAGGGTTACCAG  150

seq1  ACATTTAGGGCTACTGTTACCTGAGGGATTAGAAGCAGTCGGAGAGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAGGGCTACTGTTACCTGAGGGATTAGAAGCAGTCGGAGAGTGCT  200

seq1  TGGGCCCAAACCCACAGGCCATGCTTTTTCCTGCTCTTCAAGTTGGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCAAACCCACAGGCCATGCTTTTTCCTGCTCTTCAAGTTGGCTGA  250

seq1  TCATTCTTAGGTATGCAGAGAAAAATAGCCAGGCTGGCTCTAAAGGCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTAGGTATGCAGAGAAAAATAGCCAGGCTGGCTCTAAAGGCCAC  300

seq1  AGGCTTCCATCAATCTTTGATGAATCTAACAGCTCTTTCTTTCTGGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCCATCAATCTTTGATGAATCTAACAGCTCTTTCTTTCTGGTGAG  350

seq1  CACAGCACCTCTCTTCACTTCAAAACAAATGTCCCCCATTTTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACCTCTCTTCACTTCAAAACAAATGTCCCCCATTTTTTTTTTTT  400

seq1  AAAATCCTGGCTCCTATACACTTCTCAACTAAGAAACAAAGAATTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTGGCTCCTATACACTTCTCAACTAAGAAACAAAGAATTC  446