BAC Information

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BAC

Clone NameB6Ng01-032N17
Chromosome5 (Build37)
Map Location 140,949,804 - 141,074,771
singlet/doubletdoublet
Overlap geneEG231836, Chst12, Grifin
Upstream geneZfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1, Ftsj2, Nudt1, Snx8, Eif3s9, LOC100041291
Downstream geneLfng, Ttyh3, Iqce, AA881470, 6530401C20Rik, Gna12, Card11, LOC623466
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032N17.bB6Ng01-032N17.g
ACCDH862072DH862073
length1,042863
definitionDH862072|Mus musculus domesticus DNA, BAC clone: B6Ng01-032N17, 5' end.DH862073|Mus musculus domesticus DNA, BAC clone: B6Ng01-032N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,949,804 - 140,950,851)(141,074,200 - 141,074,771)
sequence
gaattcttagtgatgctaaagagatgagaaatctctaagactttaggaaa
catggatgtaagctgaaattgctttcccttcttggactaactaaaaggat
aacgctgaggggtttgagatctgtattaagtgggtaacatatcagttgga
caaaaaaaaaatgaagccttttcaaggagaagtgagaccattacatatac
ccatctctgtattccatgtactcatctatatatcacccatccaactactc
acccgtatgccttctctccatccacctacccatacctatccatccatcta
ttcactctcatatacatccgtcatctatttatccactcacaatccattta
tccacccacctatctcccatccatccatctgcccaaatacatattcatcc
acccacccatctcctcatttattcatccctctgcccacttatccatccat
ccatccatccatccatccatccatccatccatccatctgtccatgcaatc
atccacccatatatgtatccatccatccatgcatccacctatccatccat
ccatccacacatccatccatccatccatccatccatccatccatccatcc
atccacacatccatccatccatccatccatccatccatccatctgtccat
gcaatcatccacccatatatgcatccatccatccatccatccacctatcc
atccatgcatccacctatccatccatgcatccacctatccatccatccat
ccatccatccatccatccatccatccacacatccacttctcctcacaaaa
gttcatccatttatcaatctatacaccaacacttacctatctatccatcc
acccctctattcatcctctcaaccagacacccacccttcccaccctccat
ccattcttcacacatgccatggcccatggccaatttgctgggtgagcatg
gattcatgcctgcatgactggtattgctctagtcgagccatccctcttct
cacctggagtacatccccatgatgcaaaggaggacaggtcgc
gaattcatgtgtagaggacagtcatctatatcaggtatctttctctatcc
ctcagccccttactttttgaggcagggtctctcactaaacctagagctta
ccggttgggctgcagcggctgatctgtgagctccagggacccacctgtac
gccctccccagcctcaggattgcaggtgagtcgcatgccacgggacctgg
ctaggggtccgggttaaagctcttatgctttcacagcaggtactttgtcc
atgccaactcattcgctcctattaacttaactcagatatcaggtctccag
atgtaccctaggctagcctaaaattcgaagcaatccttttgcctcagatt
tcccgagtgatgggttagcctcatcatgggtatgaacgcactgttcttgg
cttaatgtggtgaattaaaaagaaaaattgttgtttttagatctctttac
ttgtatacatgtatgtgcatgccatgtatgtatgtggagatcagaggaca
acttgcaggagttggcttttcctcccgccatggtggtcccagcgatcaaa
ctcaggtctttaagcttggcagcaagcactttaacctgttgaatcatctt
gttgacccatcatagggactagacacttggggcaggcagaggggtcctgt
cctgtctggagaggttgtatgcttagacatgggtgaaggtagcacccaat
gcaatagaaaccaggatgagctggagcctaaagtccagggccgtgatgcc
acctgggaggagaggacagagccacagcaggcttgcgagcccagggaagg
cacagcagatgaagtaaatgcgggatatggcaagtccttgttaagtcagt
gtgctcacctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_140949804_140950851
seq2: B6Ng01-032N17.b_46_1087

seq1  GAATTCTTAGTGATGCTAAAGAGATGAGAAATCTCTAAGACTTTAGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTGATGCTAAAGAGATGAGAAATCTCTAAGACTTTAGGAAA  50

seq1  CATGGATGTAAGCTGAAATTGCTTTCCCTTCTTGGACTAACTAAAAGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATGTAAGCTGAAATTGCTTTCCCTTCTTGGACTAACTAAAAGGAT  100

seq1  AACGCTGAGGGGTTTGAGATCTGTATTAAGTGGGTAACATATCAGTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTGAGGGGTTTGAGATCTGTATTAAGTGGGTAACATATCAGTTGGA  150

seq1  CAAAAAAAAAATGAAGCCTTTTCAAGGAGAAGTGAGACCATTACATATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAATGAAGCCTTTTCAAGGAGAAGTGAGACCATTACATATAC  200

seq1  CCATCTCTGTATTCCATGTACTCATCTATATATCACCCATCCAACTACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTGTATTCCATGTACTCATCTATATATCACCCATCCAACTACTC  250

seq1  ACCCGTATGCCTTCTCTCCATCCACCTACCCATACCTATCCATCCATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGTATGCCTTCTCTCCATCCACCTACCCATACCTATCCATCCATCTA  300

seq1  TTCACTCTCATATACATCCGTCATCTATTTATCCACTCACAATCCATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTCATATACATCCGTCATCTATTTATCCACTCACAATCCATTTA  350

seq1  TCCACCCACCTATCTCCCATCCATCCATCTGCCCAAATACATATTCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCACCTATCTCCCATCCATCCATCTGCCCAAATACATATTCATCC  400

seq1  ACCCACCCATCTCCTCATTTATTCATCCCTCTGCCCACTTATCCATCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCATCTCCTCATTTATTCATCCCTCTGCCCACTTATCCATCCAT  450

seq1  CCATCCATCCATCCATCCATCCATCCATCCATCCATCTGTCCATGCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATCCATCCATCCATCCATCCATCCATCCATCTGTCCATGCAATC  500

seq1  ATCCACCCATATATGTATCCATCCATCCATGCATCCACCTATCCATCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCCATATATGTATCCATCCATCCATGCATCCACCTATCCATCCAT  550

seq1  CCATCCACACATCCATCCATCCATCCATCCATCCATCCATCCATCCATCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCACACATCCATCCATCCATCCATCCATCCATCCATCCATCCATCC  600

seq1  ATCCACACATCCATCCATCCATCCATCCATCCATCCATCCATCTGTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACACATCCATCCATCCATCCATCCATCCATCCATCCATCTGTCCAT  650

seq1  GCAATCATCCACCCATATATGCATCCATCCATCCATCCATCCACCTATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCATCCACCCATATATGCATCCATCCATCCATCCATCCACCTATCC  700

seq1  ATCCATGCATCCACCTATCCATCCATGCATCCACCTATCCATCCATCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGCATCCACCTATCCATCCATGCATCCACCTATCCATCCATCCAT  750

seq1  CCATCCATCCATCCATCCATCCATCCACACATCCACTTCTCCTCACAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCATCCATCCATCCATCCATCCACACATCCACTTCTCCTCACAAAA  800

seq1  GTTCATCCATTTATCAATCTATACACCAACACTTACCTATCTATCCATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCCATTTATCAATCTATACACCAACACTTACCTATCTATCCATCC  850

seq1  ACCCCTCTATTCATCCTCTCAACCAGACACCCACCCTTCCCACCCTCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCTATTCATCCTCTCAACCAGACACCCACCCTTCCCACCCTCCAT  900

seq1  CCATCCTTCACACATGCCATGGCCCCATGGCCCAATTTGCTGGGTGAGCA  950
      |||| ||||||||||||||||| ||||||| |||||||||||||||||||
seq2  CCATTCTTCACACATGCCATGG-CCCATGG-CCAATTTGCTGGGTGAGCA  948

seq1  TGGAGTTCATGCCTGCATGACTGGTAATGCTCCTAGTCGAGCCATCCCTC  1000
      |||| ||||||||||||||||||||| |||| ||||||||||||||||||
seq2  TGGA-TTCATGCCTGCATGACTGGTATTGCT-CTAGTCGAGCCATCCCTC  996

seq1  TTCCCACCTGCAGTCACAATCCCCCATGATGCAGAGGAGGACA-GTCGC  1048
      ||| |||||| ||| |||   |||||||||||| ||||||||| |||||
seq2  TTCTCACCTGGAGT-ACA--TCCCCATGATGCAAAGGAGGACAGGTCGC  1042

seq1: chr5_141074200_141074771
seq2: B6Ng01-032N17.g_359_931 (reverse)

seq1  CTCAGGTGAGCACACTGAC-TAACAAGGACTTGCCATATCCCGCATTTAC  49
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTCAGGTGAGCACACTGACTTAACAAGGACTTGCCATATCCCGCATTTAC  50

seq1  TTCATCTGCTGTGCCTTCCCTGGGCTCGCAAGCCTGCTGTGGCTCTGTCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTGCTGTGCCTTCCCTGGGCTCGCAAGCCTGCTGTGGCTCTGTCC  100

seq1  TCTCCTCCCAGGTGGCATCACGGCCCTGGACTTTAGGCTCCAGCTCATCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCCAGGTGGCATCACGGCCCTGGACTTTAGGCTCCAGCTCATCC  150

seq1  TGGTTTCTATTGCATTGGGTGCTACCTTCACCCATGTCTAAGCATACAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTATTGCATTGGGTGCTACCTTCACCCATGTCTAAGCATACAAC  200

seq1  CTCTCCAGACAGGACAGGACCCCTCTGCCTGCCCCAAGTGTCTAGTCCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGACAGGACAGGACCCCTCTGCCTGCCCCAAGTGTCTAGTCCCT  250

seq1  ATGATGGGTCAACAAGATGATTCAACAGGTTAAAGTGCTTGCTGCCAAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGTCAACAAGATGATTCAACAGGTTAAAGTGCTTGCTGCCAAGC  300

seq1  TTAAAGACCTGAGTTTGATCGCTGGGACCACCATGGCGGGAGGAAAAGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGACCTGAGTTTGATCGCTGGGACCACCATGGCGGGAGGAAAAGCC  350

seq1  AACTCCTGCAAGTTGTCCTCTGATCTCCACATACATACATGGCATGCACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGCAAGTTGTCCTCTGATCTCCACATACATACATGGCATGCACA  400

seq1  TACATGTATACAAGTAAAGAGATCTAAAAACAACAATTTTTCTTTTTAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTATACAAGTAAAGAGATCTAAAAACAACAATTTTTCTTTTTAAT  450

seq1  TCACCACATTAAGCCAAGAACAGTGCGTTCATACCCATGATGAGGCTAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACATTAAGCCAAGAACAGTGCGTTCATACCCATGATGAGGCTAAC  500

seq1  CCATCACTCGGGAAATCTGAGGCAAAAGGATTGCTTCGAATTTTAGGCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTCGGGAAATCTGAGGCAAAAGGATTGCTTCGAATTTTAGGCTA  550

seq1  GCCTAGGGTACATCTGGAGACCT  572
      |||||||||||||||||||||||
seq2  GCCTAGGGTACATCTGGAGACCT  573