BAC Information

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BAC

Clone NameB6Ng01-032O17
Chromosome5 (Build37)
Map Location 83,500,126 - 83,645,192
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433912, LOC100039434
Downstream geneSrd5a2l2, LOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032O17.bB6Ng01-032O17.g
ACCDH862118DH862119
length1,001568
definitionDH862118|Mus musculus domesticus DNA, BAC clone: B6Ng01-032O17, 5' end.DH862119|Mus musculus domesticus DNA, BAC clone: B6Ng01-032O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,644,185 - 83,645,192)(83,500,126 - 83,500,699)
sequence
gaattctttgacatgaattcaaaatcatgggagtttctgacactgtgacc
aaactttctgaaaaccatcacttctttatttatacatacagggggagact
gttagccacttgctttctttcagagtaattctgaaaattagagagaatag
ttataaaactctctttaacacttgtggagcaatgatcaaatgaaatatgc
gatgccactcactaaaaatgacttaatactcacaatctggtgtggtgaca
gaaagacagtctgctaatgaaatataccaatatgtcattccactagcatc
aattgttaaactatcatttttcataggagtagaatgtcttttcttataat
gtcataatttcaatctcaatattctcttcttctcatcctaatgaatatat
tattagattattatgcctggtgtggtgtgtgtgtttaactaaaaggtatt
tagttatataataataagtttggcttcttaaatatggaaaagtttttgct
tccaaaaaacaaggtctctatggcatcgagtgaactatggtattttaaac
acgttggagtaaatttatgaaaacatgtggatagatgtaattcttagcta
gatgttaggtgaatgtcaaaggttaacagcaccaaccataagtatggaga
gatgcctcagtagttatggaatatttgctacatttctgagaacagaattt
gagttcagaatgtgtttttggacagtgagagtcactcagactgcagagtt
tcacaccctactggcttcaattggcaatcacatacacccgagatatacaa
acacagacaaatgcatacacaatccgaaattcttaggcaaattgatggaa
ctagaaaatatcatcctgagttaagtaacccaatcttaaaagaacacaca
tgatatgcacatcgataagtggatattagcccagaagctggaatacccat
atataattacaagccactgaagctcagaagaggaaaccaagtgtggatac
t
caggacagggaagcaggagtgggtgggatggtaagcagggggagcggaga
taggatagggggctttctaaggggaaatgagaaaaagggataacatttta
aatgtaaataaagaaaatatctaataaaaaataaaaggaggcattcaaaa
caacaaagaaaaaagggtgctgtgatcatggtgtctcttcacagcaataa
aacagtaagaatttttaccaggggctgatcatgcttttgtttggaggatt
gtggacttagggattttggattaggaaagcagtagactgttttacgaagc
acctaactggacatactaatagatgcatgaaagacaatgatccagaggtg
attagaactgtgagggtccagcgaaagatgtttcccagaattttagtatg
ttgcttagaattcattcttgtgatattggtgaagaatgtgactgcttttt
ttttttttaacttgttcaatcagtttgcctgagttcaaggtgaagagatt
tatattaattgcattggcaaacaaagtctaaaaacagcatagtataaact
ctgttctgtagttcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_83644185_83645192
seq2: B6Ng01-032O17.b_47_1047 (reverse)

seq1  AGTATCCACACTTTGGTCTTCCTTCTTCTTGAGCTTCATGTGGCTTGTAA  50
      ||||||||||| ||||| |||| ||||| ||||||||| |||||||||||
seq2  AGTATCCACAC-TTGGT-TTCC-TCTTC-TGAGCTTCA-GTGGCTTGTAA  45

seq1  TTTATATCTTGGGTATTCCAAGCTTCTGGGCTAATATCCACTTATCGATG  100
       ||||||  |||||||||| ||||||||||||||||||||||||||||||
seq2  -TTATAT-ATGGGTATTCC-AGCTTCTGGGCTAATATCCACTTATCGATG  92

seq1  TGCATATCATGTGTGTTCTTTTATGATTGGGTTACCTTACTCAGGATGAT  150
      ||||||||||||||||||||||| ||||||||||| | ||||||||||||
seq2  TGCATATCATGTGTGTTCTTTTAAGATTGGGTTACTTAACTCAGGATGAT  142

seq1  ATTTTCTAGTTCCATCAATTTGCCTAAGAATTTCGGATTGTGTATGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAGTTCCATCAATTTGCCTAAGAATTTCGGATTGTGTATGCATT  192

seq1  TGTCTGTGTTTGTATATCTCGGGTGTATGTGATTGCCAATTGAAGCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTGTTTGTATATCTCGGGTGTATGTGATTGCCAATTGAAGCCAGT  242

seq1  AGGGTGTGAAACTCTGCAGTCTGAGTGACTCTCACTGTCC-AAAACACAT  299
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGGTGTGAAACTCTGCAGTCTGAGTGACTCTCACTGTCCAAAAACACAT  292

seq1  TCTGAACTCAAATTCTGTTCTCAGAAATGTAGCAAATATTCCATAACTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTCAAATTCTGTTCTCAGAAATGTAGCAAATATTCCATAACTAC  342

seq1  TGAGGCATCTCTCCATACTTATGGTTGGTGCTGTTAACCTTTGACATTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATCTCTCCATACTTATGGTTGGTGCTGTTAACCTTTGACATTCA  392

seq1  CCTAACATCTAGCTAAGAATTACATCTATCCACATGTTTTCATAAATTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACATCTAGCTAAGAATTACATCTATCCACATGTTTTCATAAATTTA  442

seq1  CTCCAACGTGTTTAAAATACCATAGTTCACTCGATGCCATAGAGACCTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACGTGTTTAAAATACCATAGTTCACTCGATGCCATAGAGACCTTG  492

seq1  TTTTTTGGAAGCAAAAACTTTTCCATATTTAAGAAGCCAAACTTATTATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGAAGCAAAAACTTTTCCATATTTAAGAAGCCAAACTTATTATT  542

seq1  ATATAACTAAATACCTTTTAGTTAAACACACACACCACACCAGGCATAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTAAATACCTTTTAGTTAAACACACACACCACACCAGGCATAAT  592

seq1  AATCTAATAATATATTCATTAGGATGAGAAGAAGAGAATATTGAGATTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAATAATATATTCATTAGGATGAGAAGAAGAGAATATTGAGATTGA  642

seq1  AATTATGACATTATAAGAAAAGACATTCTACTCCTATGAAAAATGATAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGACATTATAAGAAAAGACATTCTACTCCTATGAAAAATGATAGT  692

seq1  TTAACAATTGATGCTAGTGGAATGACATATTGGTATATTTCATTAGCAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAATTGATGCTAGTGGAATGACATATTGGTATATTTCATTAGCAGA  742

seq1  CTGTCTTTCTGTCACCACACCAGATTGTGAGTATTAAGTCATTTTTAGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTCTGTCACCACACCAGATTGTGAGTATTAAGTCATTTTTAGTG  792

seq1  AGTGGCATCGCATATTTCATTTGATCATTGCTCCACAAGTGTTAAAGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCATCGCATATTTCATTTGATCATTGCTCCACAAGTGTTAAAGAGA  842

seq1  GTTTTATAACTATTCTCTCTAATTTTCAGAATTACTCTGAAAGAAAGCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATAACTATTCTCTCTAATTTTCAGAATTACTCTGAAAGAAAGCAA  892

seq1  GTGGCTAACAGTCTCCCCCTGTATGTATAAATAAAGAAGTGATGGTTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAACAGTCTCCCCCTGTATGTATAAATAAAGAAGTGATGGTTTTC  942

seq1  AGAAAGTTTGGTCACAGTGTCAGAAACTCCCATGATTTTGAATTCATGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTTGGTCACAGTGTCAGAAACTCCCATGATTTTGAATTCATGTC  992

seq1  AAAGAATTC  1008
      |||||||||
seq2  AAAGAATTC  1001

seq1: chr5_83500126_83500699
seq2: B6Ng01-032O17.g_70_643

seq1  GAATTCCAGGACAGGGAAGCAGGAGTGGGTGGGATGGTAAGCAGGGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGGGAAGCAGGAGTGGGTGGGATGGTAAGCAGGGGGAG  50

seq1  CGGAGATAGGATAGGGGGCTTTCTAAGGGGAAATGAGAAAAAGGGATAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGATAGGATAGGGGGCTTTCTAAGGGGAAATGAGAAAAAGGGATAAC  100

seq1  ATTTTAAATGTAAATAAAGAAAATATCTAATAAAAAATAAAAGGAGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATGTAAATAAAGAAAATATCTAATAAAAAATAAAAGGAGGCAT  150

seq1  TCAAAACAACAAAGAAAAAAGGGTGCTGTGATCATGGTGTCTCTTCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAACAAAGAAAAAAGGGTGCTGTGATCATGGTGTCTCTTCACAG  200

seq1  CAATAAAACAGTAAGAATTTTTACCAGGGGCTGATCATGCTTTTGTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAACAGTAAGAATTTTTACCAGGGGCTGATCATGCTTTTGTTTGG  250

seq1  AGGATTGTGGACTTAGGGATTTTGGATTAGGAAAGCAGTAGACTGTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGTGGACTTAGGGATTTTGGATTAGGAAAGCAGTAGACTGTTTTA  300

seq1  CGAAGCACCTAACTGGACATACTAATAGATGCATGAAAGACAATGATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCACCTAACTGGACATACTAATAGATGCATGAAAGACAATGATCCA  350

seq1  GAGGTGATTAGAACTGTGAGGGTCCAGCGAAAGATGTTTCCCAGAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGATTAGAACTGTGAGGGTCCAGCGAAAGATGTTTCCCAGAATTTT  400

seq1  AGTATGTTGCTTAGAATTCATTCTTGTGATATTGGTGAAGAATGTGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTTGCTTAGAATTCATTCTTGTGATATTGGTGAAGAATGTGACTG  450

seq1  CTTTTTTTTTTTTTAACTTGTTCAATCAGTTTGCCTGAGTTCAAGGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTAACTTGTTCAATCAGTTTGCCTGAGTTCAAGGTGAA  500

seq1  GAGATTTATATTAGTTGCATTGGCAAACAAAGTCTAAAAACAGCATAGTA  550
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGATTTATATTAATTGCATTGGCAAACAAAGTCTAAAAACAGCATAGTA  550

seq1  TAAACTCTGTTCTGTAGTTCACTT  574
      ||||||||||||||||||||||||
seq2  TAAACTCTGTTCTGTAGTTCACTT  574