BAC Information

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BAC

Clone NameB6Ng01-033I01
Chromosome5 (Build37)
Map Location 135,329,518 - 135,491,817
singlet/doubletdoublet
Overlap geneWbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11
Upstream geneLOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln
Downstream geneStx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033I01.bB6Ng01-033I01.g
ACCDH862533DH862534
length213614
definitionDH862533|Mus musculus domesticus DNA, BAC clone: B6Ng01-033I01, 5' end.DH862534|Mus musculus domesticus DNA, BAC clone: B6Ng01-033I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,329,518 - 135,329,729)(135,491,204 - 135,491,817)
sequence
gaattcatccaagtcagcaaaaggttgatcgaggacattcagtgaataga
ggcatttgctatcaaacctgatgatccgagttcaaagttcaatccctggg
aaccacagagaatgagtggactccacaagctgtccaccagccttcatatg
ccatggcaaccatacacagagagagagagagagagagagagggagagaga
gagagagagagag
gaattcctttttcttcggccttcacctctccaatgctgggattccatgcc
agtgccgctaccaccaccacccacactgggtcatgccccttgattccaga
ggtgtcactagatagagtgagcagaaagcacatgcggagtcaggtgaaca
gatattttttacaaaggaaccctgggaattgcccaccaccctggggaggg
tttccatttcacacgttgagggagtaggggcagctcatgggatctttgct
cttgggggctgctgccaccttcaggccaaaggtggtactgcttcgcttgt
ctagctgccttcccttcagaaggtggcggcaaagacaccctggcagtgac
accccccgctgccagtgaaagagggagacagagaagtataaggggctgaa
tgtgcctggagaaggaggaggaagctttacccccaacgtggtttttgagt
tggggataaaccccagagtctcacacatgcaccctattaccaagtcaccc
ctcagtagggggaattctaggcagatgctctactgctgagctacacccac
aaggtgtttattgtgtgcatggatgcctttggaggtatcggatcctctgg
ggctggaagtacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_135329518_135329729
seq2: B6Ng01-033I01.b_36_248

seq1  GAATTCATCCAAGTCAGCAAAAGGTTGAT-GAGGACATTCAGTGAATAGA  49
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAATTCATCCAAGTCAGCAAAAGGTTGATCGAGGACATTCAGTGAATAGA  50

seq1  GGCATTTGCTATCAAACCTGATGATCCGAGTTCAAAGTTCAATCCCTGGG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTGCTATCAAACCTGATGATCCGAGTTCAAAGTTCAATCCCTGGG  100

seq1  AACCACAGAGAATGAGTGGACTCCACAAGCTGTCCACCAGCCTTCATATG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGAGAATGAGTGGACTCCACAAGCTGTCCACCAGCCTTCATATG  150

seq1  CCATGGCAACCATACACAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCAACCATACACAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGA  200

seq1  GAGAGAGAGAGAG  212
      |||||||||||||
seq2  GAGAGAGAGAGAG  213

seq1: chr5_135491204_135491817
seq2: B6Ng01-033I01.g_67_680 (reverse)

seq1  GTGTACTTCCAGCCCCAGAGGATCCGATACCTCCAAAGGCATCCATGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTTCCAGCCCCAGAGGATCCGATACCTCCAAAGGCATCCATGCAC  50

seq1  ACAATAAACACCTTGTGGGTGTAGCTCAGCAGTAGAGCATCTGCCTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAACACCTTGTGGGTGTAGCTCAGCAGTAGAGCATCTGCCTAGAA  100

seq1  TTCCCCCTACTGAGGGGTGACTTGGTAATAGGGTGCATGTGTGAGACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCTACTGAGGGGTGACTTGGTAATAGGGTGCATGTGTGAGACTCT  150

seq1  GGGGTTTATCCCCAACTCAAAAACCACGTTGGGGGTAAAGCTTCCTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTATCCCCAACTCAAAAACCACGTTGGGGGTAAAGCTTCCTCCTC  200

seq1  CTTCTCCAGGCACATTCAGCCCCTTATACTTCTCTGTCTCCCTCTTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCAGGCACATTCAGCCCCTTATACTTCTCTGTCTCCCTCTTTCAC  250

seq1  TGGCAGCGGGGGGTGTCACTGCCAGGGTGTCTTTGCCGCCACCTTCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCGGGGGGTGTCACTGCCAGGGTGTCTTTGCCGCCACCTTCTGAA  300

seq1  GGGAAGGCAGCTAGACAAGCGAAGCAGTACCACCTTTGGCCTGAAGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCAGCTAGACAAGCGAAGCAGTACCACCTTTGGCCTGAAGGTGG  350

seq1  CAGCAGCCCCCAAGAGCAAAGATCCCATGAGCTGCCCCTACTCCCTCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCCCCAAGAGCAAAGATCCCATGAGCTGCCCCTACTCCCTCAAC  400

seq1  GTGTGAAATGGAAACCCTCCCCAGGGTGGTGGGCAATTCCCAGGGTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAATGGAAACCCTCCCCAGGGTGGTGGGCAATTCCCAGGGTTCCT  450

seq1  TTGTAAAAAATATCTGTTCACCTGACTCCGCATGTGCTTTCTGCTCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAAATATCTGTTCACCTGACTCCGCATGTGCTTTCTGCTCACTC  500

seq1  TATCTAGTGACACCTCTGGAATCAAGGGGCATGACCCAGTGTGGGTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGTGACACCTCTGGAATCAAGGGGCATGACCCAGTGTGGGTGGTG  550

seq1  GTGGTAGCGGCACTGGCATGGAATCCCAGCATTGGAGAGGTGAAGGCCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGCGGCACTGGCATGGAATCCCAGCATTGGAGAGGTGAAGGCCGA  600

seq1  AGAAAAAGGAATTC  614
      ||||||||||||||
seq2  AGAAAAAGGAATTC  614