BAC Information

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BAC

Clone NameB6Ng01-033J03
Chromosome5 (Build37)
Map Location 96,636,450 - 96,801,966
singlet/doubletdoublet
Overlap geneMrpl1
Upstream geneLOC100041296, LOC100041264, EG624049, EG666159, LOC666164, EG666169, D5Ertd577e, LOC100041354, LOC100040503, LOC666187, EG622731, LOC100041380, EG666203, EG666209, LOC665943, LOC433921, Cxcl13, EG666231, Cnot6l, LOC100040559
Downstream geneFras1, Anxa3, EG666266, LOC670358, Bmp2k, Paqr3, LOC100040598, EG433923, EG666293
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033J03.bB6Ng01-033J03.g
ACCDH862582DH862583
length884898
definitionDH862582|Mus musculus domesticus DNA, BAC clone: B6Ng01-033J03, 5' end.DH862583|Mus musculus domesticus DNA, BAC clone: B6Ng01-033J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,801,081 - 96,801,966)(96,636,450 - 96,637,351)
sequence
gaattccttgctttttagaataagaggatgaaatgaaactgaagggtccc
tgtaactatcaccacttaggcaccgaaacatttgattaacctgggtgtgg
ctgttgagtattcaaaggacttaggaatcgcccagcaattcctcgatgcc
tcccagagccgttgtggggacagagcggttttatctctgtatttgaagca
catatggggactctgtaaacattagttgaaagaatgaactgaatcaagcc
agtaatcatcaccgccagagttcagccacagcttggatggaacctgagtc
ctccctcctcccacttccccctcttcctctagaaactattttctcagacc
aatggaaagtactgtccaaattcaggtggatacaccctaacaattcctaa
cccctcctaaacactttttctgtagccaccactgactaggagtaacttaa
gacagctggtttccctagaataaactatttgacttcatttttaagaaagc
atagaactgtggcacccaaaggggtctcaaaccatcttttggacttgcta
aaggaaaacaatcttttaaaaagaaaaaggtgaagggagagacgggagca
ttaccacgaggtattgtcatatactacatttgtggttcttaacaaattgt
tcataaaatgtcccctccccttcaccagaagccctccaccagctcccatg
gtcttctctctaccccaggagcaaatagtccaagggtctcactccaagag
cactagaatcctggttcacaggaatttctatatccttaatactgtttttt
tcatatgcccacatcccgtaacttttgtcaccatatcccacagtaatctc
ttgatcagccccatccttggctcttcaaatcacc
gaattcagaggcaggaagtttgactccagaatattccccacttaaccaaa
atggctttctttaacaaggagggattcttatgtatcaaacattcagagat
ttggtatatgttatcttttccttactgtgaccaaaataactagcagaaat
gtcttaaaacaagaaggatttagtttgacttatagttttacaagattcag
ctcatcatagctggggaaacacatagcagagtggcttgtgccatgaccaa
aagcaagcagcaagaagccagcactcagctgccagctgcctttctctcat
gtcccctttgttctgtcagagctcacagggctcacagcccacaggacagt
gctacccacattcaggatgggtttcccccactaattaattctctctagaa
ataatatcattaccgaaatacccagaggtattcctcaatctcctacataa
ttctaaatccagtcacgatgataatgaagtcatgatcattataatggagt
gcctatttcagagtatcttttaatttatagtttttctaaagtcttaagct
aatgaatatcatctatctatctgcaaatatctgaactctggatcttactg
gttgaatgccatcagattctggtgaccaaagcaggcaataaggtacattg
aacttatacaggacattgttttaataataatactgttgtaagctattaca
ttttgtgagttctgactggatggttgtgttctcatggtaggcattttcag
tgaggaccaactgactccagctgtgggagatgaatctagagccagcaaca
ggagaatttgtgtatattcttagacggagttaactttagtatcatgaggt
gactgccagttttccagctccctctatcaatgcatctaagcacaaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_96801081_96801966
seq2: B6Ng01-033J03.b_42_925 (reverse)

seq1  GGTGAATTTGAAGAGACAAGGATGGGGCTGATCAAAGAAGATACTGTGGG  50
      |||| |||||||||| ||||||||||||||||| ||||   |||||||||
seq2  GGTG-ATTTGAAGAGCCAAGGATGGGGCTGATC-AAGAGATTACTGTGGG  48

seq1  ATATGGTGACAAAAGTTACGGGATGTGGGCATATGAAAAAAACAGTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTGACAAAAGTTACGGGATGTGGGCATATGAAAAAAACAGTATTA  98

seq1  AGGATATAGAATTCCCTGTGAACCAGGATTCTAGTGCTCTTGGAGTGAGA  150
      ||||||||||| | ||||||||||||||||||||||||||||||||||| 
seq2  AGGATATAGAAATTCCTGTGAACCAGGATTCTAGTGCTCTTGGAGTGAG-  147

seq1  ACCCTTGGACTATTTGCTCCTGGGGTAGAGAGAAGACCATGGGAGCTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGGACTATTTGCTCCTGGGGTAGAGAGAAGACCATGGGAGCTGGT  197

seq1  GGAGGGCTTCTGGTGAAGGGGAGGGGACATTTTATGAACAATTTGTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCTTCTGGTGAAGGGGAGGGGACATTTTATGAACAATTTGTTAAG  247

seq1  AACCACAAATGTAGTATATGACAATACCTCGTGGTAATGCTCCCGTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAATGTAGTATATGACAATACCTCGTGGTAATGCTCCCGTCTCT  297

seq1  CCCTTCACCTTTTTCTTTTT-AAAGATTGTTTTCCTTTAGCAAGTCCAAA  349
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCCTTCACCTTTTTCTTTTTAAAAGATTGTTTTCCTTTAGCAAGTCCAAA  347

seq1  AGATGGTTTGAGACCCCTTTGGGTGCCACAGTTCTATGCTTTCTTAAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTTGAGACCCCTTTGGGTGCCACAGTTCTATGCTTTCTTAAAAA  397

seq1  TGAAGTCAAATAGTTTATTCTAGGGAAACCAGCTGTCTTAAGTTACTCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCAAATAGTTTATTCTAGGGAAACCAGCTGTCTTAAGTTACTCCT  447

seq1  AGTCAGTGGTGGCTACAGAAAAAGTGTTTAGGAGGGGTTAGGAATTGTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTGGTGGCTACAGAAAAAGTGTTTAGGAGGGGTTAGGAATTGTTA  497

seq1  GGGTGTATCCACCTGAATTTGGACAGTACTTTCCATTGGTCTGAGAAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTATCCACCTGAATTTGGACAGTACTTTCCATTGGTCTGAGAAAAT  547

seq1  AGTTTCTAGAGGAAGAGGGGGAAGTGGGAGGAGGGAGGACTCAGGTTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTAGAGGAAGAGGGGGAAGTGGGAGGAGGGAGGACTCAGGTTCCA  597

seq1  TCCAAGCTGTGGCTGAACTCTGGCGGTGATGATTACTGGCTTGATTCAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCTGTGGCTGAACTCTGGCGGTGATGATTACTGGCTTGATTCAGT  647

seq1  TCATTCTTTCAACTAATGTTTACAGAGTCCCCATATGTGCTTCAAATACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTTCAACTAATGTTTACAGAGTCCCCATATGTGCTTCAAATACA  697

seq1  GAGATAAAACCGCTCTGTCCCCACAACGGCTCTGGGAGGCATCGAGGAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAAACCGCTCTGTCCCCACAACGGCTCTGGGAGGCATCGAGGAAT  747

seq1  TGCTGGGCGATTCCTAAGTCCTTTGAATACTCAACAGCCACACCCAGGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGCGATTCCTAAGTCCTTTGAATACTCAACAGCCACACCCAGGTT  797

seq1  AATCAAATGTTTCGGTGCCTAAGTGGTGATAGTTACAGGGACCCTTCAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAATGTTTCGGTGCCTAAGTGGTGATAGTTACAGGGACCCTTCAGT  847

seq1  TTCATTTCATCCTCTTATTCTAAAAAGCAAGGAATTC  886
      |||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCATCCTCTTATTCTAAAAAGCAAGGAATTC  884

seq1: chr5_96636450_96637351
seq2: B6Ng01-033J03.g_69_966

seq1  GAATTCAGAGGCAGGAAGTTTGACTCCAGAATATTCCCCACTTAACCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCAGGAAGTTTGACTCCAGAATATTCCCCACTTAACCAAA  50

seq1  ATGGCTTTCTTTAACAAGGAGGGATTCTTATGTATCAAACATTCAGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTCTTTAACAAGGAGGGATTCTTATGTATCAAACATTCAGAGAT  100

seq1  TTGGTATATGTTATCTTTTCCTTACTGTGACCAAAATAACTAGCAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATATGTTATCTTTTCCTTACTGTGACCAAAATAACTAGCAGAAAT  150

seq1  GTCTTAAAACAAGAAGGATTTAGTTTGACTTATAGTTTTACAAGATTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAAACAAGAAGGATTTAGTTTGACTTATAGTTTTACAAGATTCAG  200

seq1  CTCATCATAGCTGGGGAAACACATAGCAGAGTGGCTTGTGCCATGACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCATAGCTGGGGAAACACATAGCAGAGTGGCTTGTGCCATGACCAA  250

seq1  AAGCAAGCAGCAAGAAGCCAGCACTCAGCTGCCAGCTGCCTTTCTCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCAGCAAGAAGCCAGCACTCAGCTGCCAGCTGCCTTTCTCTCAT  300

seq1  GTCCCCTTTGTTCTGTCAGAGCTCACAGGGCTCACAGCCCACAGGACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTTTGTTCTGTCAGAGCTCACAGGGCTCACAGCCCACAGGACAGT  350

seq1  GCTACCCACATTCAGGATGGGTTTCCCCCACTAATTAATTCTCTCTAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCACATTCAGGATGGGTTTCCCCCACTAATTAATTCTCTCTAGAA  400

seq1  ATAATATCATTACCGAAATACCCAGAGGTATTCCTCAATCTCCTACATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCATTACCGAAATACCCAGAGGTATTCCTCAATCTCCTACATAA  450

seq1  TTCTAAATCCAGTCACGATGATAATGAAGTCATGATCATTATAATGGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATCCAGTCACGATGATAATGAAGTCATGATCATTATAATGGAGT  500

seq1  GCCTATTTCAGAGTATCTTTTAATTTATAGTTTTTCTAAAGTCTTAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTTCAGAGTATCTTTTAATTTATAGTTTTTCTAAAGTCTTAAGCT  550

seq1  AATGAATATCATCTATCTATCTGCAAATATCTGAACTCTGGATCTTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATATCATCTATCTATCTGCAAATATCTGAACTCTGGATCTTACTG  600

seq1  GTTGAATGCCATCAGATTCTGGTGACCAAAGCAGGCAATAAGGTACATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATGCCATCAGATTCTGGTGACCAAAGCAGGCAATAAGGTACATTG  650

seq1  AACTTATACAGGACATTGTTTTAATAATAATACTGTTGTAAGCTTATTAC  700
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACTTATACAGGACATTGTTTTAATAATAATACTGTTGTAAGC-TATTAC  699

seq1  ATTTTGTGAGTTCTGACTGGATGGTTGTGTTCTCATGGTAGGCATTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGAGTTCTGACTGGATGGTTGTGTTCTCATGGTAGGCATTTTCA  749

seq1  GGTGAGGACCAACTGACTCCAGCTGT-GGAGATGAATCTAAGAGCCAGCA  799
       ||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  -GTGAGGACCAACTGACTCCAGCTGTGGGAGATGAATCT-AGAGCCAGCA  797

seq1  ACAGGAGAATTTGTGTATATTCTTAGACGGAGTTAACTTTAAGTATCATG  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACAGGAGAATTTGTGTATATTCTTAGACGGAGTTAACTTT-AGTATCATG  846

seq1  AGGTGACTGCCAGTTTTCCAGCTCCCTCTTATCTATGCATCTAAGCACAA  899
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  AGGTGACTGCCAGTTTTCCAGCTCCCTC-TATCAATGCATCTAAGCACAA  895

seq1  GGT  902
       ||
seq2  AGT  898