BAC Information

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BAC

Clone NameB6Ng01-033K14
Chromosome5 (Build37)
Map Location 55,930,771 - 56,074,917
singlet/doubletdoublet
Overlap geneEG666405
Upstream geneEG666377, LOC666380
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033K14.bB6Ng01-033K14.g
ACCDH862646DH862647
length890956
definitionDH862646|Mus musculus domesticus DNA, BAC clone: B6Ng01-033K14, 5' end.DH862647|Mus musculus domesticus DNA, BAC clone: B6Ng01-033K14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,074,029 - 56,074,917)(55,930,771 - 55,931,729)
sequence
gaattcatataatgagaacaaatttaactaataggtggtgggagaagatt
aacaatataatgcaattaaagtcaagcatgggatatgatttgcatttaaa
tgttatcttttagattaatgccatatattaaagtctaggaacatatggaa
tatttcacatatgtatataaatgagctcattctttctcttaatatattta
attttacccacttatttaaaattgaaatgcaatatatctgaatttaaaat
ttttacaaaacaaatttcttcctacaaattatccattgaataatttttac
ccctcatttttgtatttattgtccaatctctgtccttaacattttctaaa
actaacccaatgcattgtactctatggaataataatagtaatacataaga
ccaaatttacattaactttttaaaacaagttttaaaggcccaagggagac
atatcatctaaaattagtaaaattctattgaacttataaaaattagtatt
caatggtacagaatactaagaaagttttgaaaagtattcaggatgttttg
aatttattctctattccaagatgatttgcttgccttagtctccaaagtag
tttagattgtgagcctacaccagcagaccaattggtaactttggaatttt
gattgagagagagagtgaaagaaattactactccagaccaggtaggtctt
caagggacagaggtgaagttcgattgtgattttcataactctgatcagct
tagactactataaataaatctataggaaaggactctttaggagtgctaag
agaaagcagtcagaatgcaaatggaagggagagaatggaaatcaacagaa
gatgatcttcaaatagaagtttcttctacggacctatgag
gaattcatatatattcatatatataaatttatatatatgtatatcaagac
aatgtgaaataaaatataacattcagatgctatattaaacaattaagcat
tattttacaggatttaatatcacaaccacaaactctacttctcatcaatc
tttctttctctcattttcctctatctttttccatatatcattctcattaa
ttttattcacttaaaactgtcctacttgagcacaggcttctatttgctac
attgttcaagtatcttattcctcccactcaataatgcccttactttaaat
gtatacattagtatgaaatagtatcttatgatttttggttctgagtcttg
tctctgtaatcttgcagtcttccctttcattattctacaaatactcacat
acatgtatgaacacatttgtatacaaatatcagactttgatacttctttc
tcagattaagaattatcttacttatcaatttcatatgttcaaatatacaa
taatatatgattctaatacaaaaaactctattgtttgtacaacatgaata
ccaaacgtgaactataggaactcctgaaaataatgaaatagactctttgt
atactttgtataatttagagaagaaaatctcttaaattaaatttagacat
agaactgcctacgccaataagtgaaatgctatcatttttattggtctttt
ctatttttaaacttttttgaaaatttattaatcatgccgggcagtggggg
gcacatgcctttaaatcccagcacttggggaggcaaaggcagggatattt
ctaagttcaagaccagcctgggtctacagagtgaattccaggacagccag
gctacacagagaatcctgtctcgaaaaacaaacaaaacatattaatcatt
ttatatgcttccattcaaatgcttctaccttccagtgtccctccttctgc
aaattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_56074029_56074917
seq2: B6Ng01-033K14.b_45_934 (reverse)

seq1  CTCATAGGTCCGTAGAAGAAACTTCTATTTGAAGATCATCTTCTGCTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCATAGGTCCGTAGAAGAAACTTCTATTTGAAGATCATCTTCTGTTGAT  50

seq1  TTCCATTCTCTCCCTTCCATTTGCATTCTGACTGCTTTCTCTTAGCACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTCTCTCCCTTCCATTTGCATTCTGACTGCTTTCTCTTAGCACTC  100

seq1  CTAAAGAGTCCTTTCCTATAGATTTATTTATAGTAGTCTAAGCTGATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGTCCTTTCCTATAGATTTATTTATAGTAGTCTAAGCTGATCAG  150

seq1  AGTTATGAAAATCACAATCGAACTTCACCTCTGT-CCTTGAAGACCTACC  199
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGTTATGAAAATCACAATCGAACTTCACCTCTGTCCCTTGAAGACCTACC  200

seq1  TGGTCTGGAGTAGTAATTTCTTTCACTCTCTCTCTCAATCAAAATTCCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGGAGTAGTAATTTCTTTCACTCTCTCTCTCAATCAAAATTCCAA  250

seq1  AGTTACCAATTGGTCTGCTGGTGTAGGCTCACAATCTAAACTACTTTGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCAATTGGTCTGCTGGTGTAGGCTCACAATCTAAACTACTTTGGA  300

seq1  GACTAAGGCAAGCAAATCATCTTGGAATAGAGAATAAATTCAAAACATCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGGCAAGCAAATCATCTTGGAATAGAGAATAAATTCAAAACATCC  350

seq1  TGAATACTTTTCAAAACTTTCTTAGTATTCTGTACCATTGAATACTAATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACTTTTCAAAACTTTCTTAGTATTCTGTACCATTGAATACTAATT  400

seq1  TTTATAAGTTCAATAGAATTTTACTAATTTTAGATGATATGTCTCCCTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAGTTCAATAGAATTTTACTAATTTTAGATGATATGTCTCCCTTG  450

seq1  GGCCTTTAAAACTTGTTTTAAAAAGTTAATGTAAATTTGGTCTTATGTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTAAAACTTGTTTTAAAAAGTTAATGTAAATTTGGTCTTATGTAT  500

seq1  TACTATTATTATTCCATAGAGTACAATGCATTGGGTTAGTTTTAGAAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTATTATTCCATAGAGTACAATGCATTGGGTTAGTTTTAGAAAAT  550

seq1  GTTAAGGACAGAGATTGGACAATAAATACAAAAATGAGGGGTAAAAATTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGACAGAGATTGGACAATAAATACAAAAATGAGGGGTAAAAATTA  600

seq1  TTCAATGGATAATTTGTAGGAAGAAATTTGTTTTGTAAAAATTTTAAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGGATAATTTGTAGGAAGAAATTTGTTTTGTAAAAATTTTAAATT  650

seq1  CAGATATATTGCATTTCAATTTTAAATAAGTGGGTAAAATTAAATATATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATATTGCATTTCAATTTTAAATAAGTGGGTAAAATTAAATATATT  700

seq1  AAGAGAAAGAATGAGCTCATTTATATACATATGTGAAATATTCCATATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGAATGAGCTCATTTATATACATATGTGAAATATTCCATATGT  750

seq1  TCCTAGACTTTAATATATGGCATTAATCTAAAAGATAACATTTAAATGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGACTTTAATATATGGCATTAATCTAAAAGATAACATTTAAATGCA  800

seq1  AATCATATCCCATGCTTGACTTTAATTGCATTATATTGTTAATCTTCTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATCCCATGCTTGACTTTAATTGCATTATATTGTTAATCTTCTCC  850

seq1  CACCACCTATTAGTTAAATTTGTTCTCATTATATGAATTC  889
      ||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCTATTAGTTAAATTTGTTCTCATTATATGAATTC  890

seq1: chr5_55930771_55931729
seq2: B6Ng01-033K14.g_69_1024

seq1  GAATTCATATATATTCATATATATAAATTTATATATATGTATATCAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATATATTCATATATATAAATTTATATATATGTATATCAAGAC  50

seq1  AATGTGAAATAAAATATAACATTCAGATGCTATATTAAACAATTAAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAAATAAAATATAACATTCAGATGCTATATTAAACAATTAAGCAT  100

seq1  TATTTTACAGGATTTAATATCACAACCACAAACTCTACTTCTCATCAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTACAGGATTTAATATCACAACCACAAACTCTACTTCTCATCAATC  150

seq1  TTTCTTTCTCTCATTTTCCTCTATCTTTTTCCATATATCATTCTCATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTCTCATTTTCCTCTATCTTTTTCCATATATCATTCTCATTAA  200

seq1  TTTTATTCACTTAAAACTGTCCTACTTGAGCACAGGCTTCTATTTGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCACTTAAAACTGTCCTACTTGAGCACAGGCTTCTATTTGCTAC  250

seq1  ATTGTTCAAGTATCTTATTCCTCCCACTCAATAATGCCCTTACTTTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCAAGTATCTTATTCCTCCCACTCAATAATGCCCTTACTTTAAAT  300

seq1  GTATACATTAGTATGAAATAGTATCTTATGATTTTTGGTTCTGAGTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATTAGTATGAAATAGTATCTTATGATTTTTGGTTCTGAGTCTTG  350

seq1  TCTCTGTAATCTTGCAGTCTTCCCTTTCATTATTCTACAAATACTCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTAATCTTGCAGTCTTCCCTTTCATTATTCTACAAATACTCACAT  400

seq1  ACATGTATGAACACATTTGTATACAAATATCAGACTTTGATACTTCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATGAACACATTTGTATACAAATATCAGACTTTGATACTTCTTTC  450

seq1  TCAGATTAAGAATTATCTTACTTATCAATTTCATATGTTCAAATATACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTAAGAATTATCTTACTTATCAATTTCATATGTTCAAATATACAA  500

seq1  TAATATATGATTCTAATACAAAAAACTCTATTGTTTGTACAACATGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATATGATTCTAATACAAAAAACTCTATTGTTTGTACAACATGAATA  550

seq1  CCAAACGTGAACTATAGGAACTCCTGAAAATAATGAAATAGACTCTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACGTGAACTATAGGAACTCCTGAAAATAATGAAATAGACTCTTTGT  600

seq1  ATACTTTGTATAATTTAGAGAAGAAAATCTCTTAAATTAAATTTAGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTGTATAATTTAGAGAAGAAAATCTCTTAAATTAAATTTAGACAT  650

seq1  AGAACTGCCTACGCCAATAAGTGAAATGCTATCATTTTTATTGGTC-TTT  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGAACTGCCTACGCCAATAAGTGAAATGCTATCATTTTTATTGGTCTTTT  700

seq1  CTATTTTTAAAC-TTTTTGAAAATTTATTAATCATGCCGGGCAGT-GGTG  747
      |||||||||||| |||||||||||||||||||||||||||||||| || |
seq2  CTATTTTTAAACTTTTTTGAAAATTTATTAATCATGCCGGGCAGTGGGGG  750

seq1  GCACATGCCTTTAAATCCCAGCACTT-GGGAGGCAAAGGCAGGGATATTT  796
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCACATGCCTTTAAATCCCAGCACTTGGGGAGGCAAAGGCAGGGATATTT  800

seq1  CTAAGTTCAAGACCAGCCT-GGTCTACAGAGTGAATTCCAGGACAGCCAA  845
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  CTAAGTTCAAGACCAGCCTGGGTCTACAGAGTGAATTCCAGGACAGCC-A  849

seq1  GGCTACACAGAGAAATCCTGTCTCGAAAAAACAAACAAAAACATTATTAA  895
      |||||||||||| |||||||||||| |||||||||| |||||| ||||||
seq2  GGCTACACAGAG-AATCCTGTCTCG-AAAAACAAAC-AAAACA-TATTAA  895

seq1  TCATTTTATATGCTTCCATTCCAAATGCTATCTACCTTCCAGTGTCCCCT  945
      |||||||||||||||||||| |||||||| ||||||||||||||| ||||
seq2  TCATTTTATATGCTTCCATT-CAAATGCT-TCTACCTTCCAGTGT-CCCT  942

seq1  CCTCCTGCAAACTG  959
      ||| ||||||| ||
seq2  CCTTCTGCAAATTG  956