BAC Information

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BAC

Clone NameB6Ng01-033L18
Chromosome5 (Build37)
Map Location 31,196,309 - 31,342,635
singlet/doubletdoublet
Overlap gene9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6
Upstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik
Downstream gene0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033L18.bB6Ng01-033L18.g
ACCDH862701DH862702
length1,021860
definitionDH862701|Mus musculus domesticus DNA, BAC clone: B6Ng01-033L18, 5' end.DH862702|Mus musculus domesticus DNA, BAC clone: B6Ng01-033L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,196,309 - 31,197,336)(31,341,772 - 31,342,635)
sequence
gaattcagcccactttgacttccagggctgcaatttctcagagaagaaca
tgtatgcccgagaccgtagagatggccagtccaaagagggaagcggccgt
gtcgcaatctacaaagcctcagggataatccacaggttgggaggaaactg
gcatagtcgagaaataacttctttaaaggaaaaaatacttattccagggt
gtttgaggggcttgaaccacgcaaatcttctcaaaagagagcctcagtta
gcaaggttggcattattctgggagttcttcacgttcggaggacttcctgg
gcacatggttagttgttacttgggaatcacagcattttctcttggtcttt
acttgtttcaaagtgatgactatcttagaccatcttggtgtccctcagtg
ttctgctgcaagacactgacaaagatctctgtgtcttagctacacacttg
aatgcaactacaacactggacgctcagtcaacagcatccctgctgcctgc
catgacaacgggcgcgccagcccccctccccctccggctttcccctccag
atacactgtggaactattcgagcaggtaggattgcatggagtaagtgggg
aaggggaaccccaatctaagatcctctgcagggttagctgttaaggtaat
aggcgagaacacaggtgtaatttctgaccccaatcacagactttactctg
gtacatctaagtaaatatgtggtctgagctgacctctctcatgggttcag
gtcactcctaggtttaatagtataccattagtgtagtcttgatgtgtctt
tttctaggcacataagagaaataaaactgtaggtttaaacaacacaaact
tcttctgggaaggtcatggtttcatgcatagcagcctctgttcttgaaca
gcaagttttaaatggacctgagataagatcagggcgcaggttcggggcac
ccactgtaggtcagcctcttgtcgctcttgtgctgggtgccacattgttg
ggcaaacgcagctagagagag
gaattctttgctctcctgtggtctctgctgtctaccatgtcagatgatat
ctagtcagtgctcaccttatttgctgggtgtggaccaagtgacaccaacc
cccactgtgtaccttgtgctcttttggaaactgttgcatgtctgttctca
tctcagcttcccaacagcctcactttccaggagacaggcgtggcgaggta
ggcagcgtgctgaggcctctctgctcatcagaggtagtgctggatgggct
gtgtagtttgctcttcagagtccacgttctccctgcctgaggcagatgcc
ttcatgtctggctccccttcctgatgcaccaggctctggattggcaaggg
catgtctaggggcttctccacacagaaagcaggggtggcatctctgagtg
tgctctgctcttctttgcagttagtcctctattttgtgatggacctcctg
aaagacatgccagggctgcctgggctcttcgttgcctgtctcttcagtgg
atctctcaggtactcctttctacagctgctctagattaaatgtggtctgc
tgcccagctgggacagtatgcccatctgtggtctgctgccccgctgggac
agtatgcccgtctgtcttgtatggcaaggcagtttagcctctcccaagac
ttactttcgtttgacaatatcagtcatctacttgatcaaatccatacttt
catcagaaaaggcttgccttcaaacctctggggtagtctggtagggggag
gatagtttcttaccttaatgccactgaaccctctgtagagtcctggctgt
tttggttctcacacgtagcaaactatcttctttctccctttctgcacaat
cttctgcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_31196309_31197336
seq2: B6Ng01-033L18.b_48_1068

seq1  GAATTCAGCCCACTTTGACTTCCAGGGCTGCAATTTCTCAGAGAAGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCACTTTGACTTCCAGGGCTGCAATTTCTCAGAGAAGAACA  50

seq1  TGTATGCCCGAGACCGTAGAGATGGCCAGTCCAAAGAGGGAAGCGGCCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCCCGAGACCGTAGAGATGGCCAGTCCAAAGAGGGAAGCGGCCGT  100

seq1  GTCGCAATCTACAAAGCCTCAGGGATAATCCACAGGTTGGGAGGAAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCAATCTACAAAGCCTCAGGGATAATCCACAGGTTGGGAGGAAACTG  150

seq1  GCATAGTCGAGAAATAACTTCTTTAAAGGAAAAAATACTTATTCCAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTCGAGAAATAACTTCTTTAAAGGAAAAAATACTTATTCCAGGGT  200

seq1  GTTTGAGGGGCTTGAACCACGCAAATCTTCTCAAAAGAGAGCCTCAGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGGGGCTTGAACCACGCAAATCTTCTCAAAAGAGAGCCTCAGTTA  250

seq1  GCAAGGTTGGCATTATTCTGGGAGTTCTTCACGTTCGGAGGACTTCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTTGGCATTATTCTGGGAGTTCTTCACGTTCGGAGGACTTCCTGG  300

seq1  GCACATGGTTAGTTGTTACTTGGGAATCACAGCATTTTCTCTTGGTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGTTAGTTGTTACTTGGGAATCACAGCATTTTCTCTTGGTCTTT  350

seq1  ACTTGTTTCAAAGTGATGACTATCTTAGACCATCTTGGTGTCCCTCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTCAAAGTGATGACTATCTTAGACCATCTTGGTGTCCCTCAGTG  400

seq1  TTCTGCTGCAAGACACTGACAAAGATCTCTGTGTCTTAGCTACACACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGCAAGACACTGACAAAGATCTCTGTGTCTTAGCTACACACTTG  450

seq1  AATGCAACTACAACACTGGACGCTCAGTCAACAGCATCCCTGCTGCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAACTACAACACTGGACGCTCAGTCAACAGCATCCCTGCTGCCTGC  500

seq1  CATGACAACGGGCGCGCCAGCCCCCCTCCCCCTCCGGCTTTCCCCTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAACGGGCGCGCCAGCCCCCCTCCCCCTCCGGCTTTCCCCTCCAG  550

seq1  ATACACTGTGGAACTATTCGAGCAGGTAGGATTGCATGGAGTAAGTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTGTGGAACTATTCGAGCAGGTAGGATTGCATGGAGTAAGTGGGG  600

seq1  AAGGGGAACCCCAATCTAAGATCCTCTGCAGGGTTAGCTGTTAAGGTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAACCCCAATCTAAGATCCTCTGCAGGGTTAGCTGTTAAGGTAAT  650

seq1  AGGCGAGAACACAGGTGTAATTTCTGACCCCAATCACAGACTTTACTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAGAACACAGGTGTAATTTCTGACCCCAATCACAGACTTTACTCTG  700

seq1  GTACATCTAAGTAAATATGTGGTCTGAGCTGACCTCTCTCATGGGTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCTAAGTAAATATGTGGTCTGAGCTGACCTCTCTCATGGGTTCAG  750

seq1  GTCACTCCTAGGTTTAATAGTATACCATTAGTGTAGTCTTGATGTGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCCTAGGTTTAATAGTATACCATTAGTGTAGTCTTGATGTGTCTT  800

seq1  TTTCTAGGCACATAAGAGAAATAAAACTGTAGGTTTTAAACAACACAAAC  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTCTAGGCACATAAGAGAAATAAAACTGTAGG-TTTAAACAACACAAAC  849

seq1  -TCTTCTGGGAAGGTCATGGTTCCATGCACAGCAGCCCCTG-CCCTGAAC  898
       ||||||||||||||||||||| |||||| ||||||| |||  | |||||
seq2  TTCTTCTGGGAAGGTCATGGTTTCATGCATAGCAGCCTCTGTTCTTGAAC  899

seq1  AGCAAGTTGTAAATGGACCTGAGATAAAGAACCAGGGCGCAGGGTTCGGG  948
      |||||||| ||||||||||||||||||   | ||||||||| ||||||||
seq2  AGCAAGTTTTAAATGGACCTGAGATAA--GATCAGGGCGCA-GGTTCGGG  946

seq1  GCACCCACTGTTAGGTCCAGCCTCTTGTCGCCTCTTGTGCTGGGTGCCAC  998
      |||||||||| ||||| ||||||||||||| |||||||||||||||||||
seq2  GCACCCACTG-TAGGT-CAGCCTCTTGTCG-CTCTTGTGCTGGGTGCCAC  993

seq1  ACTGTTGGGCAAACAGCAGCTAGAGTAGAG  1028
      | |||||||||||| |||||||||| ||||
seq2  ATTGTTGGGCAAAC-GCAGCTAGAG-AGAG  1021

seq1: chr5_31341772_31342635
seq2: B6Ng01-033L18.g_70_929 (reverse)

seq1  AATGCAGAGGATATGGTGCTGAAAGGGAGGAAAGAGATGAGTTGTGCTAC  50
      ||||||||  | || |||| ||||||||| ||  |||| |||| ||||||
seq2  AATGCAGA--AGATTGTGCAGAAAGGGAGAAAGAAGAT-AGTT-TGCTAC  46

seq1  GTGTGAGAACCAAAACAGGCAGGACTCTACAGAGGGCTCAGTGGCATAAA  100
      |||||||||||||||||| ||||||||||||||||| |||||||||| ||
seq2  GTGTGAGAACCAAAACAGCCAGGACTCTACAGAGGGTTCAGTGGCATTAA  96

seq1  GGTAAGAAACTATCCTCCCCCTACCAGACTACCCCAGAGGTTTGAAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAAACTATCCTCCCCCTACCAGACTACCCCAGAGGTTTGAAGGCA  146

seq1  AGCCTTTTCTGATGAAAGTATGGATTTGATCAAGTAGATGACTGATATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTCTGATGAAAGTATGGATTTGATCAAGTAGATGACTGATATTG  196

seq1  TCAAACGAAAGTAAGTCTTGGGAGAGGCTAAACTGCCTTGCCATACAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACGAAAGTAAGTCTTGGGAGAGGCTAAACTGCCTTGCCATACAAGA  246

seq1  CAGACGGGCATACTGTCCCAGCGGGGCAGCAGACCACAGATGGGCATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGGGCATACTGTCCCAGCGGGGCAGCAGACCACAGATGGGCATACT  296

seq1  GTCCCAGCTGGGCAGCAGACCACATTTAATCTAGAGCAGCTGTAGAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGCTGGGCAGCAGACCACATTTAATCTAGAGCAGCTGTAGAAAGG  346

seq1  AGTACCTGAGAGATCCACTGAAGAGACAGGCAACGAAGAGCCCAGGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTGAGAGATCCACTGAAGAGACAGGCAACGAAGAGCCCAGGCAGC  396

seq1  CCTGGCATGTCTTTCAGGAGGTCCATCACAAAATAGAGGACTAACTGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATGTCTTTCAGGAGGTCCATCACAAAATAGAGGACTAACTGCAA  446

seq1  AGAAGAGCAGAGCACACTCAGAGATGCCACCCCTGCTTTCTGTGTGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCAGAGCACACTCAGAGATGCCACCCCTGCTTTCTGTGTGGAGA  496

seq1  AGCCCCTAGACATGCCCTTGCCAATCCAGAGCCTGGTGCATCAGGAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTAGACATGCCCTTGCCAATCCAGAGCCTGGTGCATCAGGAAGGG  546

seq1  GAGCCAGACATGAAGGCATCTGCCTCAGGCAGGGAGAACGTGGACTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGACATGAAGGCATCTGCCTCAGGCAGGGAGAACGTGGACTCTGA  596

seq1  AGAGCAAACTACACAGCCCATCCAGCACTACCTCTGATGAGCAGAGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAACTACACAGCCCATCCAGCACTACCTCTGATGAGCAGAGAGGC  646

seq1  CTCAGCACGCTGCCTACCTCGCCACGCCTGTCTCCTGGAAAGTGAGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCACGCTGCCTACCTCGCCACGCCTGTCTCCTGGAAAGTGAGGCTG  696

seq1  TTGGGAAGCTGAGATGAGAACAGACATGCAACAGTTTCCAAAAGAGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAGCTGAGATGAGAACAGACATGCAACAGTTTCCAAAAGAGCACA  746

seq1  AGGTACACAGTGGGGGTTGGTGTCACTTGGTCCACACCCAGCAAATAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACACAGTGGGGGTTGGTGTCACTTGGTCCACACCCAGCAAATAAGG  796

seq1  TGAGCACTGACTAGATATCATCTGACATGGTAGACAGCAGAGACCACAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACTGACTAGATATCATCTGACATGGTAGACAGCAGAGACCACAGG  846

seq1  AGAGCAAAGAATTC  864
      ||||||||||||||
seq2  AGAGCAAAGAATTC  860