BAC Information

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BAC

Clone NameB6Ng01-034N16
Chromosome5 (Build37)
Map Location 145,313,357 - 145,449,458
singlet/doubletdoublet
Overlap geneNptx2
Upstream gene2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik
Downstream geneEG621967, Tmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034N16.bB6Ng01-034N16.g
ACCDH863484DH863485
length1,006773
definitionDH863484|Mus musculus domesticus DNA, BAC clone: B6Ng01-034N16, 5' end.DH863485|Mus musculus domesticus DNA, BAC clone: B6Ng01-034N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,313,357 - 145,314,321)(145,448,707 - 145,449,458)
sequence
gaattctgtaaggctcttgtggtggtggtggcttacattaaatgatgttt
acttgctaagtgttttagggtttgattcctgcactcccccctacgagact
aggataacgtaggaatggaagttcgcagccgacctgggctacatgttatt
gggttcgggatatactgagagactgatagaagtgaaaagttctcttcatt
ttttttgttttgtgtgtatgtatatctgctgttctatatgtaagtatgcc
atgtgtggacgctttacatatcattctatcctccgtaaccctctccttct
cggctgtgaactctttctccccctgatggatgttgaacctgggtgctttg
gaagagcagcaagcatgcttagctgctgagttatttctctcgctcggagg
cctcgtttcctagccttaatgatggagataggctgtatatgggatgcaca
ccttcaatgccagcacttagcagacagaggcagaaggatggctggtctga
gtaggaattacaggacagaagcacacaatgagaccatctcaaaaaaaaaa
aaaaaaaaagaaaagaaaagaaaaggtagagacaagttctctatggtgtc
tactgtatgtcttacaaaatattccgttccttcacacctctgggagcatc
ctggagagctgtacttgccagtgcctctgtcgggattctcaccctcgggt
cttctgtgtcacaggcttttctgtggtcccttaccggccctttggacttt
cttctagtcactgtctcctagaggaagtctcctcctactgtctttagact
ggttttccaccagattgtaagcttctgggagtcaggactatcccaggact
gctggatttgggcacttttgaccaggagctggagtgctggcctgcctgaa
tgatgggtctggtacttggccaggcaccctgctgcatcaatttctttctt
ccacccaggcaacatgcattcagtcacagatgcatccaagtgtcctttct
ctccgt
gaattccactctgagggagcccttgtttcaactggctgatggtcaggggg
aaggcacacgtgtttctctttgtacaagtagactcttgccaggactcatc
ctgaccggtatctaaaagtgatcctatttttctgtaaatctgcccacatg
ccctctgtattcgtggtcaaattctggcaggtgcctttgccccctttgga
tggattgctcgctattaaaatgagggagcggctttgttctaggtaagaga
gcaaagcaaggtccctggagagtctcaggctcttccaagtggctagtggc
ttggattagcacctgatagttaatgtctgcctgcctggtttttcctcatt
tctactagtgctttacacggctgattcagaccatcagggtatgagtaagg
accagccccggacaggctggactctcctgagattccaggcttctagctgt
atgcaaaatatatttttttttcttttccaggatgaagagatgactgaggt
ggtaaagagccagcaagtagaagaacagtctcagattttggatttctggc
actcaagtaaaagataggcatagctgtgaatatctcactcctggggatgt
ggagggcagcataatgtcctgggctggctggccagtctgcctaaaggaat
gggtcactttccgttcagtgagagaccctgtcttacaaaagaataaggga
cagagcaacacagcaaggcacttgattctgatccctgggcctgcacatgc
atggagtgttgcacaggcgcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_145313357_145314321
seq2: B6Ng01-034N16.b_94_1050

seq1  TACTTGCTAGGTGTTTTAGGGTTTGATTCCTGCACAACACCCTAAGACAC  50
      ||||||||| |||||||||||||||||||||||||  | ||||| || ||
seq2  TACTTGCTAAGTGTTTTAGGGTTTGATTCCTGCACTCCCCCCTACGAGAC  50

seq1  TAGGCTAAGGCAGGATTGTGAGTTCAAAGCCGGCCTGGGCTACAGGTTAT  100
      |||| ||| | |||| ||  |||||  ||||| ||||||||||| |||||
seq2  TAGGATAACGTAGGAATGGAAGTTCGCAGCCGACCTGGGCTACATGTTAT  100

seq1  ATAGCAAGGCCTTTACTCAGAAACAGATAGGAATGAAGAGTTCTCTTAAT  150
         |   ||  | |||| ||| || ||||| | |||| ||||||||| ||
seq2  TGGGTTCGGGATATACTGAGAGACTGATAGAAGTGAAAAGTTCTCTTCAT  150

seq1  TTTTTTTGTTTTATGTGTATGTATATATGCATAGGCATATGTATGTATGC  200
      |||||||||||| ||||||||||||| |||      ||||||| ||||||
seq2  TTTTTTTGTTTTGTGTGTATGTATATCTGCTGTTCTATATGTAAGTATGC  200

seq1  CATGTGTGGAGGCCAGAGAGAGCATTAGATCCCCTGGAACTGGAGGTGCA  250
      |||||||||| ||   | | | ||||  |||| | | |||          
seq2  CATGTGTGGACGCTTTACATATCATTCTATCCTCCGTAACCCTCTCCTTC  250

seq1  GTGGCTGTGAACT-GTCATGTGACTGATGGACATTGAACCTGGGTGCTTT  299
        |||||||||||  |  |    ||||||||  |||||||||||||||||
seq2  TCGGCTGTGAACTCTTTCTCCCCCTGATGGATGTTGAACCTGGGTGCTTT  300

seq1  GGAAGAGCAGCAAGCATGCTTAGCTGCTGAGTTATTTCTCTCGCTCGGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCAGCAAGCATGCTTAGCTGCTGAGTTATTTCTCTCGCTCGGAG  350

seq1  GCCTCGTTTCCTAGCCTTAATGATGGAGATAGGCTGTATATGGGATGCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGTTTCCTAGCCTTAATGATGGAGATAGGCTGTATATGGGATGCAC  400

seq1  ACCTTCAATGCCAGCACTTAGCAGACAGAGGCAGAAGGATGGCTGGTCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAATGCCAGCACTTAGCAGACAGAGGCAGAAGGATGGCTGGTCTG  450

seq1  AGTAGGAATTACAGGACAGAAGCACACAATGAGACCATCTCAAAAAAAAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAATTACAGGACAGAAGCACACAATGAGACCATCTCAAAAAAAAA  500

seq1  AAAAAAAAAAGAAAAGAAAAGAAAAGGTAGAGACAAGTTCTCTATGGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGAAAAGAAAAGAAAAGGTAGAGACAAGTTCTCTATGGTGT  550

seq1  CTACTGTATGTCTTACAAAATATTCCGTTCCTTCACACCTCTGGGAGCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTATGTCTTACAAAATATTCCGTTCCTTCACACCTCTGGGAGCAT  600

seq1  CCTGGAGAGCTGTACTTGCCAGTGCCTCTGTCGGGATTCTCACCCTCGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGAGCTGTACTTGCCAGTGCCTCTGTCGGGATTCTCACCCTCGGG  650

seq1  TCTTCTGTGTCACAGGC-TTTCTGTGGTCCCTTACCGGCCCTTTGGAC-T  697
      ||||||||||||||||| |||||||||||||||||||||||||||||| |
seq2  TCTTCTGTGTCACAGGCTTTTCTGTGGTCCCTTACCGGCCCTTTGGACTT  700

seq1  TCCTCTAGTCACTGTCTCCTAGAGGAAGTCCCCTCCTACTGTCTTTAGAC  747
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTTCTAGTCACTGTCTCCTAGAGGAAGTCTCCTCCTACTGTCTTTAGAC  750

seq1  TGGTTTCCCACCAGAGTGTAAGCTCCTGGGAGTCAAGGACTATCCCAGGA  797
      |||||| |||||||| |||||||| ||||||||| |||||||||||||||
seq2  TGGTTTTCCACCAGATTGTAAGCTTCTGGGAGTC-AGGACTATCCCAGGA  799

seq1  CTGCTGGATTTGGGCAC-TTTGACCAGGAGCTGGAGTGCCTGGCCTGCCT  846
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  CTGCTGGATTTGGGCACTTTTGACCAGGAGCTGGAGTG-CTGGCCTGCCT  848

seq1  GAGTGATGGGTCCTGGTACTTGGCCAGGCCACCCTGCTGCAACCAACTCC  896
      || |||||||| |||||||||||||||| ||||||||||| | ||| | |
seq2  GAATGATGGGT-CTGGTACTTGGCCAGG-CACCCTGCTGC-ATCAATTTC  895

seq1  TTTTCCTTCCACCCAGGCAACAGTGCATTCAAGTCACCAGATGCATTCAA  946
      |||  ||||||||||||||||| ||||||| ||||| |||||||| || |
seq2  TTT--CTTCCACCCAGGCAACA-TGCATTC-AGTCA-CAGATGCA-TCCA  939

seq1  AGTGTCCCTTCCTCTCCGT  965
      ||||| |||| ||||||||
seq2  AGTGT-CCTTTCTCTCCGT  957

seq1: chr5_145448707_145449458
seq2: B6Ng01-034N16.g_90_840 (reverse)

seq1  TGTGTGCCTGTGC-ACACTCCATGCATGTGCAGG-CCAAGGATCAGAATC  48
      |||| |||||||| |||||||||||||||||||| ||| |||||||||||
seq2  TGTGCGCCTGTGCAACACTCCATGCATGTGCAGGCCCAGGGATCAGAATC  50

seq1  AAGTGCCTTGCTCTGTTGCTCTTTCCCTTATTCTTTTTTAAGACAGGGTC  98
      |||||||||||| ||||||||| |||||||||||||| ||||||||||||
seq2  AAGTGCCTTGCTGTGTTGCTCTGTCCCTTATTCTTTTGTAAGACAGGGTC  100

seq1  TCTCACTGAACCGAAAGTGACCCATTCCACTAGGCAGACTGGCCAGCCAG  148
      ||||||||||| ||||||||||||||||  ||||||||||||||||||||
seq2  TCTCACTGAACGGAAAGTGACCCATTCCTTTAGGCAGACTGGCCAGCCAG  150

seq1  CCCAGGACATTATGCTGCCC-CCACATCCCCAGGACTGAGATATTCACAG  197
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  CCCAGGACATTATGCTGCCCTCCACATCCCCAGGAGTGAGATATTCACAG  200

seq1  CTATGCCTATCTTTTACTTGAGTGCCAGAAATCCAAAATCTGAGACTGTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCTATCTTTTACTTGAGTGCCAGAAATCCAAAATCTGAGACTGTT  250

seq1  CTTCTACTTGCTGGCTCTTTACCACCTCAGTCATCTCTTCAACCTGGAAA  297
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTCTACTTGCTGGCTCTTTACCACCTCAGTCATCTCTTCATCCTGGAAA  300

seq1  AGAAAAAAAAATATATTTTGCATACAGCTAGAAGCCTGGAATCTCAGGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAAAATATATTTTGCATACAGCTAGAAGCCTGGAATCTCAGGAG  350

seq1  AGTCCAGCCTGTCTGGGGCTGGTCCTTACTCATACCCTGATGGTCTGAAT  397
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGCCTGTCCGGGGCTGGTCCTTACTCATACCCTGATGGTCTGAAT  400

seq1  CAGCCGTGTAAAGCACTCGTAGAAATGAGGTATAGCCAGGCAGGCAGACA  447
      ||||||||||||||||| |||||||||||| | | |||||||||||||||
seq2  CAGCCGTGTAAAGCACTAGTAGAAATGAGGAAAAACCAGGCAGGCAGACA  450

seq1  TCAACTCTCAGGTGCTAATCCAAGCCACTAGCCACTTGGAAGAGCCTGAG  497
      | |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTATCAGGTGCTAATCCAAGCCACTAGCCACTTGGAAGAGCCTGAG  500

seq1  ACTCTCCAGGGACCTTGCTTTGCTCTCTTACCTTGAACAAAGCTGTTCAC  547
      ||||||||||||||||||||||||||||||||| ||||||||| | || |
seq2  ACTCTCCAGGGACCTTGCTTTGCTCTCTTACCTAGAACAAAGCCGCTCCC  550

seq1  TCATCTCTGCTGCCTGCAATCCATCCAAAGGATGGCAAAGGCACCTGCCA  597
      |||| |     ||  ||||||||||||||||  |||||||||||||||||
seq2  TCATTTTAATAGCGAGCAATCCATCCAAAGG-GGGCAAAGGCACCTGCCA  599

seq1  GAATACTGACCAAGAATACAGATGGCATCTGGGCAGAGCTACAGAAAAAT  647
      ||||  |||||| ||||||||| ||||| ||||||||  |||||||||||
seq2  GAAT-TTGACCACGAATACAGAGGGCATGTGGGCAGATTTACAGAAAAAT  648

seq1  AGGACCACTTTTAGATACCGGTCATGTATGAGTCCTGGCAAGCGTCTACA  697
      |||| ||||||||||||||||||| | ||||||||||||||| |||||| 
seq2  AGGATCACTTTTAGATACCGGTCA-GGATGAGTCCTGGCAAGAGTCTACT  697

seq1  TGTTCTAAAGAGAAACATGTGTGCCTTCCCCCTGACCATCAGACTGTTGA  747
      ||| | ||||||||||| |||||||||||||||||||||||| | |||||
seq2  TGTAC-AAAGAGAAACACGTGTGCCTTCCCCCTGACCATCAGCCAGTTGA  746

seq1  AACAA  752
      |||||
seq2  AACAA  751