BAC Information

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BAC

Clone NameB6Ng01-035D15
Chromosome5 (Build37)
Map Location 33,540,130 - 33,541,025
singlet/doubletsinglet
Overlap genenone
Upstream genePlb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1
Downstream geneSpon2, Ctbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035D15.bB6Ng01-035D15.g
ACCDH863755DH863756
length885890
definitionDH863755|Mus musculus domesticus DNA, BAC clone: B6Ng01-035D15, 5' end.DH863756|Mus musculus domesticus DNA, BAC clone: B6Ng01-035D15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttaagtatggctgtgtagaattccgttgtctccagcggtgtga
gtggagagtgtcgctgacagagcctccagctttcttctgtcagtccctgg
aaagcacctctggactctgtttccccgtgtgtccttgacatgaataacag
gaatgaagaactagtgaacatttgagttctcattgtgtgtcaagtactgt
gctggattcttaaggacatggtctcagtcagctctccaagtgtgcctgag
tgaaatatgttactattacgggatgtatatttttgcaggagtggaggaca
agcaagtgtgtgatatgggcagtagtgagagcaccctaggaggagacaag
agtcagagtgggacactcagacgtttttcacacagagatgaccttaagaa
atggagggctgaagatagtatagatacttacgtatgacatatttacaata
agacacaagtattataaacatttatgaggctgagagaaaagggcactgta
gaggctgcgtttgaatactgactcactataccatgtgaccttgggtatgc
ctctttttctttgctttagtttcatcacatacaaagtcttaaattgtccc
tatgtgaataagttgataccatgaggattcatatatgtgtaaaaggctcc
ctcacattgggttggcacataaaaagaccggatcttatgtttaaattttt
aatgtgcctaaaattttatatattttatatgcagaggtaaaaaacttata
atattgttacatatactatattgataattgtagaccatcttttttcaatc
acacatttcggaataagtccctggggaaagattattatatttaggaaaca
tgcaaagccttgggcagtgatgctaagatactgaa
gaattcaaaaggggcaggaacctggatttgggagctggtgcagaggccat
ggaaggtgctactggtttactactcatagctttttccagcctatcccacc
agcccagggagagcaccactcatgatggtctgggtcctccttcattacac
tataagaaaattccctgacaacaggttgtccaagaggagtcctggtgagg
atccagtattgatggtgtggcagaagccaggggtctcagaccagaccaat
gactcactgcaatcaatatttgcaagtaaagatgtgtagaccaatgagta
tactgtgtaacacatcataaaacaccatagattccacagtgaggttttgg
ttttttgtttctaacttttatttttttgttttctttttttttttttcttt
tcttttgtgaggaaggttgcaagggtagagggttgatatgaaggtcctgg
gagatgaatggggttccagtgcatgatgtgaaattcacaagaatcaatac
attttattttaattaaaaaaaggaaagccgggcagtggtggtgcacccct
ttaatgccagcacttgggaaggcgaggcaggcggatttctgagttcgagg
ccgcctggtctcagatgaactccagactgcctttcaagacaggaaccttg
tctcgaaaaccaaacaaaaccaaaacaacaaccaaaaagaatggccctgg
gactggaagatacttattggtaaaaccccggctgctctttaaaggcccag
ttcagttcatgcctctggcacttccaatatctaagtcagttccaggatga
aaccctcacacgaacccatacagcaacaccatgcctaataaagaatcttt
taaattgtatatatgtatggggtattatgtatatgaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_33540130_33541025
seq2: B6Ng01-035D15.b_48_932

seq1  GAATTCCTTAAGTATGGCTGTGTAGAATTCCGTTGTCTCCAGCGGTGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAGTATGGCTGTGTAGAATTCCGTTGTCTCCAGCGGTGTGA  50

seq1  GTGGAGAGTGTCGCTGACAGAGCCTCCAGCTTTCTTCTGTCAGTCCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAGTGTCGCTGACAGAGCCTCCAGCTTTCTTCTGTCAGTCCCTGG  100

seq1  AAAGCACCTCTGGACTCTGTTTCCCCGTGTGTCCTTGACATGAATAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACCTCTGGACTCTGTTTCCCCGTGTGTCCTTGACATGAATAACAG  150

seq1  GAATGAAGAACTAGTGAACATTTGAGTTCTCATTGTGTGTCAAGTACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAGAACTAGTGAACATTTGAGTTCTCATTGTGTGTCAAGTACTGT  200

seq1  GCTGGATTCTTAAGGACATGGTCTCAGTCAGCTCTCCAAGTGTGCCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATTCTTAAGGACATGGTCTCAGTCAGCTCTCCAAGTGTGCCTGAG  250

seq1  TGAAATATGTTACTATTACGGGATGTATATTTTTGCAGGAGTGGAGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATGTTACTATTACGGGATGTATATTTTTGCAGGAGTGGAGGACA  300

seq1  AGCAAGTGTGTGATATGGGCAGTAGTGAGAGCACCCTAGGAGGAGACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTGTGTGATATGGGCAGTAGTGAGAGCACCCTAGGAGGAGACAAG  350

seq1  AGTCAGAGTGGGACACTCAGACGTTTTTCACACAGAGATGACCTTAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAGTGGGACACTCAGACGTTTTTCACACAGAGATGACCTTAAGAA  400

seq1  ATGGAGGGCTGAAGATAGTATAGATACTTACGTATGACATATTTACAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGGCTGAAGATAGTATAGATACTTACGTATGACATATTTACAATA  450

seq1  AGACACAAGTATTATAAACATTTATGAGGCTGAGAGAAAAGGGCACTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAAGTATTATAAACATTTATGAGGCTGAGAGAAAAGGGCACTGTA  500

seq1  GAGGCTGCGTTTGAATACTGACTCACTATACCATGTGACCTTGGGTATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGCGTTTGAATACTGACTCACTATACCATGTGACCTTGGGTATGC  550

seq1  CTCTTTTTCTTTGCTTTAGTTTCATCACATACAAAGTCTTAAATTGTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCTTTGCTTTAGTTTCATCACATACAAAGTCTTAAATTGTCCC  600

seq1  TATGTGAATAAGGTTGATACCATGAGGATTCATATATGTGTAAAAGGCTC  650
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAATAA-GTTGATACCATGAGGATTCATATATGTGTAAAAGGCTC  649

seq1  CCTCACATTGGGTTGGCACATAAAAAAGACCGGATCTTATGTTTAAATTT  700
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  CCTCACATTGGGTTGGCACAT-AAAAAGACCGGATCTTATGTTTAAA-TT  697

seq1  TTTAATGTGCCTAAAATTTTAATATATTTATAATGCAGAAGTAAAAAAAC  750
      |||||||||||||||||||| ||||||||   ||||||| ||||||||  
seq2  TTTAATGTGCCTAAAATTTT-ATATATTTTATATGCAGAGGTAAAAAACT  746

seq1  TATAAATATTGTTACATATACTATATTTGATAAATGTAAGACCATC-TTT  799
      ||| ||||||||||||||||||||| ||||||| ||| |||||||| |||
seq2  TAT-AATATTGTTACATATACTATA-TTGATAATTGT-AGACCATCTTTT  793

seq1  CTCAATCACACATTTCGCGATTAGTCCCTGGGGAAAGATTATTATATTTA  849
       ||||||||||||||||  || ||||||||||||||||||||||||||||
seq2  TTCAATCACACATTTCGGAATAAGTCCCTGGGGAAAGATTATTATATTTA  843

seq1  GGAGAACATGCAAAGGGCCTGGGGCAGGTGATGCTCAGAGTACTGAA  896
      ||| ||||||||||  |||| ||||| |||||||| ||| |||||||
seq2  GGA-AACATGCAAA--GCCTTGGGCA-GTGATGCTAAGA-TACTGAA  885