BAC Information

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BAC

Clone NameB6Ng01-035H17
Chromosome5 (Build37)
Map Location 109,054,376 - 109,190,266
singlet/doubletdoublet
Overlap geneGak, Tmem175, Dgkq, Idua, Slc26a1, LOC100042616, Fgfrl1, LOC671564
Upstream geneAW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614, Dr1, Pigg, Pde6b, Atp5k, Mfsd7, Pcgf3, LOC100042557, Cplx1, LOC100042571
Downstream gene1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035H17.bB6Ng01-035H17.g
ACCDH863933DH863934
length948757
definitionDH863933|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H17, 5' end.DH863934|Mus musculus domesticus DNA, BAC clone: B6Ng01-035H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,189,496 - 109,190,266)(109,054,376 - 109,055,134)
sequence
gaattcacaaatataagcacattacatagattaacatagtcattgaaaca
cttgcccagtcccaaactctatgggactcttgaggcagcaccccactcgc
agttcaaatcaccctcagcatcactgtcttccatgtctactagtatggct
aaatgaattttctatagttaaaatttgaaaaccatggagcttttcttaga
gttttacattttcagtataattacattttttatgtacttatcacaaacca
gttcataatatctataatggtatttgatttgatttgtttgttttgttttg
ctttatttattgattttgggttttttgagacagtgtttctatgcagttct
gactgctctgtaactcagtgtttagacccagcttcaaagtctcagagatc
tgcctgcctctgcctactgagtgctgggattaaagtcatgtgtcaccaca
cccactgtttttttttttctccctaattttgaaagtagctattgtgagtt
cttttttattgaacagccttgccaaatgtgtattgagaaatatgaacaag
cattttcagaaagctaatgtttggctctgttgatcttctcacatgaacat
acctacacacacacacattatacacataattaaattaaaaataaaatctt
ttttaaaagatccatctaagttagattttttttctgtcaatggaaagact
tcaggtagtttcagtccattgaccttttcagcatcctttcccttcccagc
tagaatagtggctcttactttgtgctaagttgacaacacaacactactac
acatggctaatgcttgcctggatctcccacacttcctcttctcttgctct
taccgcctcacagactctgtgtctgtcaatgatcattccctacccaagat
tactttggatttattgtctgggaaaaaaaactcacctttgctttgttt
gaattctacctgggttatcaaacaccaaggaaggctaacgcaagtaggca
aatatccacacccagaggaaaaaagtagattgtgctgccctgacattcta
agagagaaaaaaaacaaaaaacaaaaaccaatagcactcataaagatgaa
tcaaagaactgacgttttgcttttttcaaacaagttgaagggctggagag
atggtttagtggttaagagcattggctgctcttccagaggtcctgagttg
aagtcccagcaattacatgatggctcataaccatctctaatatgacctgg
catgcaggtgtatgtgtagatagagcactcatagattaaataaataaatc
tttaaaaaacaaaaacaaggttgctatgttggctctgaattcattctcta
actcagccttcccaatgcttcctttaaatacacagtcccatcataaaaat
gttaagttgccagtaaaccaagactaggaagaaacttcctcagtcttata
aagaatgtctctaaaggaccaacagcagcagtactagtggtaaaatgaga
tccggatgaaggccaaggtgcatgttcacaccactggtaatcagtattat
acacgatccttttgctgatgcagttagacaaaagaaaatcaaaggcttcc
agatcacaaaagaggtaaagatgttttcatttgcagatcagcatctttca
tgtagcatacttagtgaaatctcaaaaaaaatattagacggaaaagagag
ggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_109189496_109190266
seq2: B6Ng01-035H17.b_43_813 (reverse)

seq1  AAAGTAAGAGCCACTATTCTAGCTGGGAAGGGAAAGGATGCTGAAAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAGAGCCACTATTCTAGCTGGGAAGGGAAAGGATGCTGAAAAGGT  50

seq1  CAATGGACTGAAACTACCTGAAGTCTTTCCATTGACAGAAAAAAAATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGACTGAAACTACCTGAAGTCTTTCCATTGACAGAAAAAAAATCTA  100

seq1  ACTTAGATGGATCTTTTAAAAAAGATTTTATTTTTAATTTAATTATGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGATGGATCTTTTAAAAAAGATTTTATTTTTAATTTAATTATGTGT  150

seq1  ATAATGTGTGTGTGTGTAGGTATGTTCATGTGAGAAGATCAACAGAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTGTGTGTGTGTAGGTATGTTCATGTGAGAAGATCAACAGAGCCA  200

seq1  AACATTAGCTTTCTGAAAATGCTTGTTCATATTTCTCAATACACATTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAGCTTTCTGAAAATGCTTGTTCATATTTCTCAATACACATTTGG  250

seq1  CAAGGCTGTTCAATAAAAAAGAACTCACAATAGCTACTTTCAAAATTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGTTCAATAAAAAAGAACTCACAATAGCTACTTTCAAAATTAGG  300

seq1  GAGAAAAAAAAAAACAGTGGGTGTGGTGACACATGACTTTAATCCCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAAAAAAACAGTGGGTGTGGTGACACATGACTTTAATCCCAGCA  350

seq1  CTCAGTAGGCAGAGGCAGGCAGATCTCTGAGACTTTGAAGCTGGGTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAGGCAGAGGCAGGCAGATCTCTGAGACTTTGAAGCTGGGTCTAA  400

seq1  ACACTGAGTTACAGAGCAGTCAGAACTGCATAGAAACACTGTCTCAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAGTTACAGAGCAGTCAGAACTGCATAGAAACACTGTCTCAAAAA  450

seq1  ACCCAAAATCAATAAATAAAGCAAAACAAAACAAACAAATCAAATCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAATCAATAAATAAAGCAAAACAAAACAAACAAATCAAATCAAAT  500

seq1  ACCATTATAGATATTATGAACTGGTTTGTGATAAGTACATAAAAAATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTATAGATATTATGAACTGGTTTGTGATAAGTACATAAAAAATGTA  550

seq1  ATTATACTGAAAATGTAAAACTCTAAGAAAAGCTCCATGGTTTTCAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACTGAAAATGTAAAACTCTAAGAAAAGCTCCATGGTTTTCAAATT  600

seq1  TTAACTATAGAAAATTCATTTAGCCATACTAGTAGACATGGAAGACAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTATAGAAAATTCATTTAGCCATACTAGTAGACATGGAAGACAGTG  650

seq1  ATGCTGAGGGTGATTTGAACTGCGAGTGGGGTGCTGCCTCAAGAGTCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAGGGTGATTTGAACTGCGAGTGGGGTGCTGCCTCAAGAGTCCCA  700

seq1  TAGAGTTTGGGACTGGGCAAGTGTTTCAATGACTATGTTAATCTATGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTTGGGACTGGGCAAGTGTTTCAATGACTATGTTAATCTATGTAA  750

seq1  TGTGCTTATATTTGTGAATTC  771
      |||||||||||||||||||||
seq2  TGTGCTTATATTTGTGAATTC  771

seq1: chr5_109054376_109055134
seq2: B6Ng01-035H17.g_68_824

seq1  GAATTCTACCTGGGTTATCAAACACCAAGGAAGGCTAACGCAAGTAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTGGGTTATCAAACACCAAGGAAGGCTAACGCAAGTAGGCA  50

seq1  AATATCCACACCCAGAGGAAAAAAGTAGATTGTGCTGCCCTGACATTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCACACCCAGAGGAAAAAAGTAGATTGTGCTGCCCTGACATTCTA  100

seq1  AGAGAGAAAAAAAACAAAAAACAAAAACCAATAGCACTCATAAAGATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAAAAAACAAAAAACAAAAACCAATAGCACTCATAAAGATGAA  150

seq1  TCAAAGAACTGACGTTTTGCTTTTTTCAAACAAGTTGAAGGGCTGGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAACTGACGTTTTGCTTTTTTCAAACAAGTTGAAGGGCTGGAGAG  200

seq1  ATGGTTTAGTGGTTAAGAGCATTGGCTGCTCTTCCAGAGGTCCTGAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTAGTGGTTAAGAGCATTGGCTGCTCTTCCAGAGGTCCTGAGTTG  250

seq1  AAGTCCCAGCAATTACATGATGGCTCATAACCATCTCTAATATGACCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCAGCAATTACATGATGGCTCATAACCATCTCTAATATGACCTGG  300

seq1  CATGCAGGTGTATGTGTAGATAGAGCACTCATAGATTAAATAAATAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGGTGTATGTGTAGATAGAGCACTCATAGATTAAATAAATAAATC  350

seq1  TTTAAAAAACAAAAACAAGGTTGCTATGTTGGCTCTGAATTCATTCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAACAAAAACAAGGTTGCTATGTTGGCTCTGAATTCATTCTCTA  400

seq1  ACTCAGCCTTCCCAATGCTTCCTTTAAATACACAGTCCCATCATAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCCTTCCCAATGCTTCCTTTAAATACACAGTCCCATCATAAAAAT  450

seq1  GTTAAGTTGCCAGTAAACCAAGACTAGGAAGAAACTTCCTCAGTCTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTTGCCAGTAAACCAAGACTAGGAAGAAACTTCCTCAGTCTTATA  500

seq1  AAGAATGTCTCTAAAGGACCAACAGCAGCAGTACTAGTGGTAAAATGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTCTCTAAAGGACCAACAGCAGCAGTACTAGTGGTAAAATGAGA  550

seq1  TCCGGATGAAGGCCAAGGTGCATGTTCACACCACTGGTAATCAGTATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGATGAAGGCCAAGGTGCATGTTCACACCACTGGTAATCAGTATTAT  600

seq1  ACACGATCCTTTTGCTGATGCAGTTAGACAAAAGAAAATCAAAGGCTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGATCCTTTTGCTGATGCAGTTAGACAAAAGAAAATCAAAGGCTTCC  650

seq1  AGATCACAAAAGAGGTAAAGATGTTTTCATTTGCAGATCAGCATCTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACAAAAGAGGTAAAGATGTTTTCATTTGCAGATCAGCATCTTTCA  700

seq1  TGTAGCATACTTAGTGAAATCTCAAAAAAAAATATTAGACGGAAAAAGAG  750
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  TGTAGCATACTTAGTGAAATCTC-AAAAAAAATATTAGACGG-AAAAGAG  748

seq1  AGGGAGGGA  759
      |||||||||
seq2  AGGGAGGGA  757