BAC Information

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BAC

Clone NameB6Ng01-035K13
Chromosome5 (Build37)
Map Location 128,465,259 - 128,649,285
singlet/doubletdoublet
Overlap geneTmem132d
Upstream geneTmem132c, Slc15a4, Glt1d1
Downstream geneFzd10, LOC100040398, Piwil1, Rimbp2, Stx2, Ran, LOC100040441, Gpr133, LOC100039355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035K13.bB6Ng01-035K13.g
ACCDH864067DH864068
length1,020368
definitionDH864067|Mus musculus domesticus DNA, BAC clone: B6Ng01-035K13, 5' end.DH864068|Mus musculus domesticus DNA, BAC clone: B6Ng01-035K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,465,259 - 128,466,297)(128,648,912 - 128,649,285)
sequence
gaattcatcgggtatcacctggctacaggcgtggttttgacaaatgctag
ttggtagacatctagacatctcagtgcccataggcatgctctggaattgg
atcctgggtagatgaccagaactattttatcagcccttagctcgtctcat
taactggctagttctgtctcttcagagtttcttttcactacaatgtctgc
tcgtctctgtgacaagtgagaaagaaaatggtttcgtgtcagcctttctt
gaggatgaaatgaaagaagtggaggtgagaactcggatgggttggctgag
aggggctcttaaggcatcgttagtgagcagacatgtctctagcgacccaa
gttttacatcttcacagaagtgtctttgaacaatgtcatctattattatc
tgctgtgccttttcatagaggactggcttatggaaacatgtcgattacac
cgcccaacactcaatctctctcacaggaaaagctcagggagagctcctga
gaacaaacaaggttaagatggctaattagagatcatgagattggatggac
agaagccaagataaaagccaccaacacagagacaagaggaagagacacag
agaacagaacaaggaaggaagaaggcacccccaccacacatacacacaca
cacacaaacacacacacacacacacacacacacacacacacacacacaca
ccttgcatgccaaagtgctattgctggccctagtctgttcagagtcaatt
tcaagaacactggatactagctctcactagagcctgacagtttagatgct
ggaaacccaaatcagaagctgaattcaaggtctcagtggggggtaggcaa
agcccagtagactgagtcgtctgaaccagagagatcggaagtgtcagccg
ctctcacactgcctggagaggaaagggacaggattgtgagtatagtcgaa
ctcagtgcaagtctgatggcaggtagatgctacaatgtagacgagtgaca
tcagcagagggtgatccgtt
cacatgtgtgtgtgtgtgtgtgtgtgctatggtatacacacacacacaca
cacacacacacacatacacagagagaaatggggaacatgctggtgggcag
gtgtcccatttgggtacaagggacatctatctgatttaggaaaagaaaag
caaaaacacaggcaggtttctcaagtggacctttctctccagtcaaatct
caaagaaaccacagatttatccaagtgagcaacagtttgagaacataggg
acctaggaggcatggggggggggcatgtacacgtttctgaagttgcaagt
gtgacaagaggagcagggatcactggggttgaagttcacactcacataat
ctcaactgatccttgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_128465259_128466297
seq2: B6Ng01-035K13.b_45_1064

seq1  GAATTCATCGGGTATCACCTGGCTACAGGCGTGGTTTTGACAAATGCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCGGGTATCACCTGGCTACAGGCGTGGTTTTGACAAATGCTAG  50

seq1  TTGGTAGACATCTAGACATCTCAGTGCCCATAGGCATGCTCTGGAATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGACATCTAGACATCTCAGTGCCCATAGGCATGCTCTGGAATTGG  100

seq1  ATCCTGGGTAGATGACCAGAACTATTTTATCAGCCCTTAGCTCGTCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGGTAGATGACCAGAACTATTTTATCAGCCCTTAGCTCGTCTCAT  150

seq1  TAACTGGCTAGTTCTGTCTCTTCAGAGTTTCTTTTCACTACAATGTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGCTAGTTCTGTCTCTTCAGAGTTTCTTTTCACTACAATGTCTGC  200

seq1  TCGTCTCTGTGACAAGTGAGAAAGAAAATGGTTTCGTGTCAGCCTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTCTGTGACAAGTGAGAAAGAAAATGGTTTCGTGTCAGCCTTTCTT  250

seq1  GAGGATGAAATGAAAGAAGTGGAGGTGAGAACTCGGATGGGTTGGCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGAAATGAAAGAAGTGGAGGTGAGAACTCGGATGGGTTGGCTGAG  300

seq1  AGGGGCTCTTAAGGCATCGTTAGTGAGCAGACATGTCTCTAGCGACCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTCTTAAGGCATCGTTAGTGAGCAGACATGTCTCTAGCGACCCAA  350

seq1  GTTTTACATCTTCACAGAAGTGTCTTTGAACAATGTCATCTATTATTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACATCTTCACAGAAGTGTCTTTGAACAATGTCATCTATTATTATC  400

seq1  TGCTGTGCCTTTTCATAGAGGACTGGCTTATGGAAACATGTCGATTACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGCCTTTTCATAGAGGACTGGCTTATGGAAACATGTCGATTACAC  450

seq1  CGCCCAACACTCAATCTCTCTCACAGGAAAAGCTCAGGGAGAGCTCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCAACACTCAATCTCTCTCACAGGAAAAGCTCAGGGAGAGCTCCTGA  500

seq1  GAACAAACAAGGTTAAGATGGCTAATTAGAGATCATGAGATTGGATGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAACAAGGTTAAGATGGCTAATTAGAGATCATGAGATTGGATGGAC  550

seq1  AGAAGCCAAGATAAAAGCCACCAACACAGAGACAAGAGGAAGAGACACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCAAGATAAAAGCCACCAACACAGAGACAAGAGGAAGAGACACAG  600

seq1  AGAACAGAAACAAGGAAGGAAGAAGGCACCCCCACCACACATACACACAC  650
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAG-AACAAGGAAGGAAGAAGGCACCCCCACCACACATACACACAC  649

seq1  ACACACAAACACACACACACACACACACACACACACACACACACACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAAACACACACACACACACACACACACACACACACACACACACAC  699

seq1  ACCTTGCATGCCAAAGTGCTATTGCTGGCCCTAGTCCTGTTCAGAGTCAA  750
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACCTTGCATGCCAAAGTGCTATTGCTGGCCCTAGT-CTGTTCAGAGTCAA  748

seq1  -TTCAAGAACACTGGATACTAGCTCTCACTAGAGCCTGACAGTTTAGATG  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGAACACTGGATACTAGCTCTCACTAGAGCCTGACAGTTTAGATG  798

seq1  CTGGAAACCCAAATCAGAAGCTGAATTCAAGGTCTCAGTGGGGGGTAGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAACCCAAATCAGAAGCTGAATTCAAGGTCTCAGTGGGGGGTAGGC  848

seq1  AAAGCCCAGTAGACTGAGTCGTCTGAACCAGAGAGATCGGAAGTGTACAG  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAGCCCAGTAGACTGAGTCGTCTGAACCAGAGAGATCGGAAGTGT-CAG  897

seq1  CCCGCTCTCACCACTGCCTGGAGAGGAAAGGGACCAGGATTGGTGGAAGT  949
       ||||||||| |||||||||||||||||||||| ||||||| |||  |||
seq2  -CCGCTCTCA-CACTGCCTGGAGAGGAAAGGGA-CAGGATT-GTG--AGT  941

seq1  ATAAGTCGAACTCAGTGCAGAGTCCTGATGGGCAGGGTAGATGCTTACCA  999
      || |||||||||||||||| ||| ||||| |||| ||||||||||   ||
seq2  AT-AGTCGAACTCAGTGCA-AGT-CTGAT-GGCA-GGTAGATGCT--ACA  984

seq1  GTGTAGACAGAGGTGACATCAGCAGAGGGGTGATTCCGTT  1039
       ||||||| || |||||||||||||| |||||| ||||||
seq2  ATGTAGAC-GA-GTGACATCAGCAGA-GGGTGA-TCCGTT  1020

seq1: chr5_128648912_128649285
seq2: B6Ng01-035K13.g_68_441 (reverse)

seq1  TCACAAGGATCAGTTGAGATTATGTGAGTGTGAACTTCAACCCCTGTGCT  50
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  TCACAAGGATCAGTTGAGATTATGTGAGTGTGAACTTCAACCCCAGTGAT  50

seq1  CCCTGCTCCTCTTGTCACACTTGCAACTTCAGAAACGTGTACATGCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTCCTCTTGTCACACTTGCAACTTCAGAAACGTGTACATGCCCCC  100

seq1  CCCCCATGCCTCCTAGGTCCCTATGTTCTCAAACTGTTGCTCACTTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATGCCTCCTAGGTCCCTATGTTCTCAAACTGTTGCTCACTTGGAT  150

seq1  AAATCTGTGGTTTCTTTGAGATTTGACTGGAGAGAAAGGTCCACTTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGTGGTTTCTTTGAGATTTGACTGGAGAGAAAGGTCCACTTGAGA  200

seq1  AACCTGCCTGTGTTTTTGCTTTTCTTTTCCTAAATCAGATAGATGTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCCTGTGTTTTTGCTTTTCTTTTCCTAAATCAGATAGATGTCCCT  250

seq1  TGTACCCAAATGGGACACCTGCCCACCAGCATGTTCCCCATTTCTCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCAAATGGGACACCTGCCCACCAGCATGTTCCCCATTTCTCTCTG  300

seq1  TGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACCATAGCACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACCATAGCACACACA  350

seq1  CACACACACACACATGTGGAATTC  374
      ||||||||||||||||||||||||
seq2  CACACACACACACATGTGGAATTC  374