BAC Information

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BAC

Clone NameB6Ng01-035L10
Chromosome5 (Build37)
Map Location 25,237,620 - 25,373,404
singlet/doubletdoublet
Overlap geneActr3b
Upstream geneCrygn, Rheb, Prkag2, Galntl5, E130116L18Rik, Galnt11, Mll3, Gm443, Xrcc2, LOC435835
Downstream geneLOC100038949, EG272714, EG545739, Speer4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035L10.bB6Ng01-035L10.g
ACCDH864109DH864110
length9261,127
definitionDH864109|Mus musculus domesticus DNA, BAC clone: B6Ng01-035L10, 5' end.DH864110|Mus musculus domesticus DNA, BAC clone: B6Ng01-035L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,237,620 - 25,238,550)(25,372,226 - 25,373,404)
sequence
gaattctcaactgaggaataccgaatggctgagaagcacctaaaaaaaat
gttcaacatccctagtcatcagggaaatgcaaatcaaacaaccctgagat
tccacctcacaccagtcagaatgataagatcaaaacctcaggtgacagca
gatgctggcgaggatgtggagaaagaggaacactcctccattgctggtgg
gatagcaaactggtacaaccactctggaaatcagttagacggtttctcag
aaaattggccatagtactacctgaggacccagctataccactcctgggca
tatacccagaagatgctccaacatgtaataaggacacatgctccactatg
ttcatagcagccttgtttataatagccaggagctggaaagagcctctccc
gcttctaaaggaacaagccactcccagcagcatctctgagtctaagagag
cagagtgtccctggcacgatctcatccttacccaaagctggagttcctcc
cacagatgccatgcgtggtggctcagggctctggaccagaactccagagg
ctgagacaggaggattgggagttacacgggttacacagagcgacttctca
aaaaacaaaacaaaacaaccaaaaccaaaaccaaaaccaccaccaccacc
acaacaacaaaaaacccccaagaagtcatgggtggaggagagagggatgg
agcaggaaatggggacaggaccagtagagagggaggagaacaacaggaat
ctgtaacaaacagagctagctttcctgtgaacactgcaacctctgctctg
atgggtggagctggtgcttgctgacttcctgcttagcctagaagactccc
aggttcagagagagagactgcagaaagtgaaggaggacaccacatccttc
ttttggcctctgagcacaacaggtag
gaattcagtagatatgaagagacttgggggagggtcccctacttacacct
gaagagggagtgaagctcattggcaccagaatctcgggctactgcataaa
caggtcgtccatcggactggcagtgattccttcagttgtcctgcaggttt
tcatggcatcctggatgatgtcactagagtagacatcagcagatcaacct
caaatcaatgtgtgaccatgcaaatgtgaggagaagagtcaaggtgggaa
ctccagtcttccatctcagtctgaggcatgaggcctattggaaactgtaa
aatctttcagagaaaaatgtgacactacagaaatatttgggagactttga
ctaatatagggtaaagttgcagatgcttcatggcatagacttgggatggg
gacaaccaactttcacactttgaataatgagtaatgagaaaacaaagatg
gacccaaactggttgtcagtgtatcttgccatgggaatagcagacaggcc
ccgtgggaatagcagacaggaaactaagccacatataagcaagatagaca
gagcttctttatagggacatcaacttggtgggttcattaatgtgcaccta
ctcgagtagcaactaaggggataccgtgatccagtgggagcccaagcatt
actggtcaaaaggcagcagcaggcttttattgactactagggtgagccaa
agttcagcaactgtccacagatcacagcacaatttcaaaagacatacttg
ggttcttgtgtgccagcatactagctttgcgttggggtttgacaggcagt
cacttgcttggagaactgctgggttacactgagcactgcatctttcttaa
acacaaggcctcgtgatgggcttaaagacgttactgcttgaggtaccaaa
aagcccatgtcaggcaaagaaacacatcctccctctagcagcaagtcagt
tcacctgtgtatagtactggataaactccctaatgatgcagtctgggtaa
atggagccacttgaggcacagggtcagacgagtagtttagataccagcct
tatcatttgcctcgacacactcatcgctcgaaaaagcttgagttcagagc
tatctttaccatcttgcctagtctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_25237620_25238550
seq2: B6Ng01-035L10.b_47_972

seq1  GAATTCTCAACTGAGGAATACCGAATGGCTGAGAAGCACCTAAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACTGAGGAATACCGAATGGCTGAGAAGCACCTAAAAAAAAT  50

seq1  GTTCAACATCCCTAGTCATCAGGGAAATGCAAATCAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACATCCCTAGTCATCAGGGAAATGCAAATCAAACAACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAATGATAAGATCAAAACCTCAGGTGACAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAATGATAAGATCAAAACCTCAGGTGACAGCA  150

seq1  GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGG  200

seq1  GATAGCAAACTGGTACAACCACTCTGGAAATCAGTTAGACGGTTTCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCAAACTGGTACAACCACTCTGGAAATCAGTTAGACGGTTTCTCAG  250

seq1  AAAATTGGCCATAGTACTACCTGAGGACCCAGCTATACCACTCCTGGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGCCATAGTACTACCTGAGGACCCAGCTATACCACTCCTGGGCA  300

seq1  TATACCCAGAAGATGCTCCAACATGTAATAAGGACACATGCTCCACTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCAGAAGATGCTCCAACATGTAATAAGGACACATGCTCCACTATG  350

seq1  TTCATAGCAGCCTTGTTTATAATAGCCAGGAGCTGGAAAGAGCCTCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGCAGCCTTGTTTATAATAGCCAGGAGCTGGAAAGAGCCTCTCCC  400

seq1  GCTTCTAAAGGAACAAGCCACTCCCAGCAGCATCTCTGAGTCTAAGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTAAAGGAACAAGCCACTCCCAGCAGCATCTCTGAGTCTAAGAGAG  450

seq1  CAGAGTGTCCCTGGCACGATCTCATCCTTACCCAAAGCTGGAGTTCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTCCCTGGCACGATCTCATCCTTACCCAAAGCTGGAGTTCCTCC  500

seq1  CACAGATGCCATGCGTGGTGGCTCAGGGCTCTGGACCAGAACTCCAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATGCCATGCGTGGTGGCTCAGGGCTCTGGACCAGAACTCCAGAGG  550

seq1  CTGAGACAGGAGGATTGGGAGTTACACGGGTTACACAGAGCGACTTCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACAGGAGGATTGGGAGTTACACGGGTTACACAGAGCGACTTCTCA  600

seq1  AAAAACAAAACAAAACAACCAAAACCAAAACCAAAACCACCACCACCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAACAAAACAACCAAAACCAAAACCAAAACCACCACCACCACC  650

seq1  ACAACAACAAAAAACCCCCAAGAAGTCATGGGTGGAGGAGAGAGGGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAAAAAACCCCCAAGAAGTCATGGGTGGAGGAGAGAGGGATGG  700

seq1  AGCAGGGAAATGGGGACAGGACCAGTAGAGAGGGAGGAGAACAAACAGGA  750
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCA-GGAAATGGGGACAGGACCAGTAGAGAGGGAGGAGAAC-AACAGGA  748

seq1  ATCTGTAACAAACAGAGCTAGCTTCCCTGTGAACACTGCAACCTCTGCTC  800
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATCTGTAACAAACAGAGCTAGCTTTCCTGTGAACACTGCAACCTCTGCTC  798

seq1  TGATGGGGTGGAGCTGGGGCTTGCTGACTTCCTGCTTAGCCTAGAAGACC  850
      |||| |||||||||||| ||||||||||||||||||||||||||||||| 
seq2  TGAT-GGGTGGAGCTGGTGCTTGCTGACTTCCTGCTTAGCCTAGAAGACT  847

seq1  CCCAGGTTCAGAGAGAGAGACTGCAGAAAGTGAGAGAGGACACCCAACA-  899
      |||||||||||||||||||||||||||||||||  |||||||||  ||| 
seq2  CCCAGGTTCAGAGAGAGAGACTGCAGAAAGTGAAGGAGGACACC--ACAT  895

seq1  CCCTCTTTTGGCCTCTGAGCACAAACAGGTAG  931
      || ||||||||||||||||||| |||||||||
seq2  CCTTCTTTTGGCCTCTGAGCAC-AACAGGTAG  926

seq1: chr5_25372226_25373404
seq2: B6Ng01-035L10.g_67_1193 (reverse)

seq1  AACAGAACCCAGGCTAGGCAGAAGTGTAAAGATAGCTTTCTAGAACACCA  50
      ||||||       |||||||  |  |||||||||||| |   |||| | |
seq2  AACAGA-------CTAGGCAAGATGGTAAAGATAGCTCT---GAACTCAA  40

seq1  GCCCTTTCCTGGACTGATGTTTG-GTCGGTGGCCAAATGGGGTAAATGCT  99
      ||  ||||   ||  ||||  || ||||   | ||||||    | | |  
seq2  GCTTTTTC---GAGCGATGAGTGTGTCG--AGGCAAATG----ATAAGGC  81

seq1  TGGTATCTCTGACTCATCCTGTCTGACCCCTTTGCTGCCTCAACATTGGC  149
      ||||||||   |||  ||  |||||||||   || |||||||  | ||||
seq2  TGGTATCT-AAACTACTC--GTCTGACCC---TG-TGCCTCA--AGTGGC  122

seq1  TTCCATTTTACCCAGACTTGCCAATCATTTAAGGGAGGTTTTTATCCAGT  199
       |||| ||||||||||| |||  ||||||  ||||||   ||||||||||
seq2  -TCCA-TTTACCCAGAC-TGC--ATCATT--AGGGAG---TTTATCCAGT  162

seq1  ACTATAACACAGGGTGAACTTGACCTTTTGCCTGCTAGAGTGAGGGTGTG  249
      ||||| ||||| ||||||| ||||   ||| ||||||||| |||| ||||
seq2  ACTAT-ACACA-GGTGAAC-TGAC---TTG-CTGCTAGAGGGAGGATGTG  205

seq1  TTTCTTCTGCCCTGACCATGTGGCTTTCTTGGTACCTCAAGCAGTAACCG  299
      |||||| || ||||| |||| |||||| ||||||||||||||||||| ||
seq2  TTTCTT-TG-CCTGA-CATG-GGCTTT-TTGGTACCTCAAGCAGTAA-CG  249

seq1  TCTTTAAGCCCCATCACGAGGCCTTGTGTTTAAGAAAGATGCAGTGCTCA  349
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAG-CCCATCACGAGGCCTTGTGTTTAAGAAAGATGCAGTGCTCA  298

seq1  GTGTAACCCAGCAGTTCTCCAAGCAAGTTGACTGCCTGTCAAACCCCAAA  399
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  GTGTAACCCAGCAGTTCTCCAAGCAAG-TGACTGCCTGTCAAACCCC-AA  346

seq1  CGCAAAGCTAGTATGCTGGCACACAAGAA-CCAAGTATGTCTTTTGAAAT  448
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CGCAAAGCTAGTATGCTGGCACACAAGAACCCAAGTATGTCTTTTGAAAT  396

seq1  TGTGCTGTGATCTGTGGACAGTTGCTGAACTTTGGCTCACCCTAGTAGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTGATCTGTGGACAGTTGCTGAACTTTGGCTCACCCTAGTAGTC  446

seq1  AATAAAAGCCTGCTGCTGCCTTTTGACCAGTAATGCTTGGGCTCCCACTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGCCTGCTGCTGCCTTTTGACCAGTAATGCTTGGGCTCCCACTG  496

seq1  GATCACGGTATCCCCTTAGTTGCTACTCGAGTAGGTGCACATTAATGAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACGGTATCCCCTTAGTTGCTACTCGAGTAGGTGCACATTAATGAAC  546

seq1  CCACCAAGTTGATGTCCCTATAAAGAAGCTCTGTCTATCTTGCTTATATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAGTTGATGTCCCTATAAAGAAGCTCTGTCTATCTTGCTTATATG  596

seq1  TGGCTTAGTTTCCTGTCTGCTATTCCCACGGGGCCTGTCTGCTATTCCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGTTTCCTGTCTGCTATTCCCACGGGGCCTGTCTGCTATTCCCA  646

seq1  TGGCAAGATACACTGACAACCAGTTTGGGTCCATCTTTGTTTTCTCATTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGATACACTGACAACCAGTTTGGGTCCATCTTTGTTTTCTCATTA  696

seq1  CTCATTATTCAAAGTGTGAAAGTTGGTTGTCCCCATCCCAAGTCTATGCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATTCAAAGTGTGAAAGTTGGTTGTCCCCATCCCAAGTCTATGCC  746

seq1  ATGAAGCATCTGCAACTTTACCCTATATTAGTCAAAGTCTCCCAAATATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCATCTGCAACTTTACCCTATATTAGTCAAAGTCTCCCAAATATT  796

seq1  TCTGTAGTGTCACATTTTTCTCTGAAAGATTTTACAGTTTCCAATAGGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGTGTCACATTTTTCTCTGAAAGATTTTACAGTTTCCAATAGGCC  846

seq1  TCATGCCTCAGACTGAGATGGAAGACTGGAGTTCCCACCTTGACTCTTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCTCAGACTGAGATGGAAGACTGGAGTTCCCACCTTGACTCTTCT  896

seq1  CCTCACATTTGCATGGTCACACATTGATTTGAGGTTGATCTGCTGATGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACATTTGCATGGTCACACATTGATTTGAGGTTGATCTGCTGATGTC  946

seq1  TACTCTAGTGACATCATCCAGGATGCCATGAAAACCTGCAGGACAACTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAGTGACATCATCCAGGATGCCATGAAAACCTGCAGGACAACTGA  996

seq1  AGGAATCACTGCCAGTCCGATGGACGACCTGTTTATGCAGTAGCCCGAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCACTGCCAGTCCGATGGACGACCTGTTTATGCAGTAGCCCGAGA  1046

seq1  TTCTGGTGCCAATGAGCTTCACTCCCTCTTCAGGTGTAAGTAGGGGACCC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTGCCAATGAGCTTCACTCCCTCTTCAGGTGTAAGTAGGGGACCC  1096

seq1  TCCCCCAAGTCTCTTCATATCTACTGAATTC  1179
      |||||||||||||||||||||||||||||||
seq2  TCCCCCAAGTCTCTTCATATCTACTGAATTC  1127