BAC Information

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BAC

Clone NameB6Ng01-035O09
Chromosome5 (Build37)
Map Location 70,073,627 - 70,218,879
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream geneGabrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035O09.bB6Ng01-035O09.g
ACCDH864244DH864245
length937992
definitionDH864244|Mus musculus domesticus DNA, BAC clone: B6Ng01-035O09, 5' end.DH864245|Mus musculus domesticus DNA, BAC clone: B6Ng01-035O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,217,916 - 70,218,879)(70,073,627 - 70,074,622)
sequence
gaattctataagaagtttagaggagtattattatcagtatcctaaatttt
ttcaataagatagaacaaaaaggggaactattaactgcataactactgag
gcccaaacaactataagaaagcaatatactaatttccttcataaaaacac
agaaaataaactaatcagaaaccagatttaacagcacattcaaaagatca
aacttgtttttaatctttcctatggcttctttgtttgaacaaataagagt
cttgttaaaaattcctacttacacataaacatgctgctaataatgttggg
tgtgtcttctagttcatacttgactgaaaacaatctaacactatatattc
aaatatatagatatgactctgttgaaaattttccctgtcaacattatgtt
cctaccagttataacagtctttacagggtgggatatcagaaaaaaattca
gcttaccaaatagaatcttgcatcataaaagattgtcctggctattacag
gattaggataataacaaaatgaggaaatctaacttactatgtgtagatga
gtcttgaaacattatgcaaatgtggaatgttctaaatcttgttatgtaag
aatgaatttttgctaagcttgacggacaaattgggattttaagttccagc
tgtagcacttagagctaatagagttgccatacgtttcttatatttcagtt
cttttctatgtaagactgaataggtaatgtggaacatgcattcatgggct
tgtagactgaattgagttaacagaaaaagatcttaactcaggtctgccac
actgaaagatttatgactgtcagtttggttatatttgtacattagatatg
catatagtagactactgaaatcatcaagcgagaactatgatctaacagtt
tcagaaatagcagacacgcactctgtgagagccaggg
gaattctacagaccatgttttctgcaaaagctgaagtgttagttttgaaa
aggaatacacaaattagagatttgatctgccccaatttatgctgagatat
gacgtgatctattgtgttccaatggagttgtattagactgatttgttggt
ttccataacaaatgccgttgctctctatacttaaataaaaatattatttg
gttcataattttgatggctgaggccaagttgcatggaggtggactctaac
attagttctttgtattgtttgccatcattgtagagaggaagagatcatat
ggccagatgggaagacagtgtggagatatcagcattgctctgtgtaaatt
cctctctcaggatctcattggatctcactaaagttatggttattgttttc
taagggaagcaaacttaaatgcctccaacacctcatactagaccccatgg
ttaaagattctatcatttccatatcactttactggcaaccaagtctctaa
tgtctttaaagtatacagtcaaagcatttgcacagcatagccaacatgcc
aacaactggaaatatttataaggaaccaagactaattattttacttttgt
tttatgattttgtggtgaattgttttaagatggatgatgtatggaataaa
atcttctttactgtatgctctgtggtggccatttacagaaatatttgact
tcagttaagttttcctcttattctttgttttggtttcttccattttcagt
ctttggcttccttgtcaataaaatgaaaacgtcacagtattgtatttaca
gaattcactctgaagggtcaactgaagactttgaacaaggctagggacta
aaatagcacattaattctaaaagcactcagctggtgaatagatgttgttc
ttcttgtcatgatgacaagcttcattaaaagattttattctcctttattg
ctttcataacatgccaatgctcaaattagcatgagatctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_70217916_70218879
seq2: B6Ng01-035O09.b_44_980 (reverse)

seq1  CCCTGTGCTCTCACCAGGAAGGTGGCCGGTTGTCTGCTAATTTTCTTGAA  50
      ||||| ||||||||    |  |||  ||  |||||||||  |||| ||||
seq2  CCCTG-GCTCTCAC----AGAGTG--CG--TGTCTGCTA--TTTC-TGAA  38

seq1  ACTGTTTAGATCATAGTGTCTCGCTTTGATTGAATTTCAGTAAGGTTCTA  100
      |||| |||||||||||| |||||| |||||   |||||||||    ||||
seq2  ACTG-TTAGATCATAGT-TCTCGC-TTGAT--GATTTCAGTA---GTCTA  80

seq1  CTATATGCAATAATCTAAATGTTACAAATATAACCAAACTGACAGTCATA  150
      |||||||||   |||| |||| ||||||||||||||||||||||||||||
seq2  CTATATGCA--TATCT-AATG-TACAAATATAACCAAACTGACAGTCATA  126

seq1  AATCCTTTCAGTGTGGCAGACCCTGAGTTAAGATCTTTTTCTGTTAACTC  200
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAT-CTTTCAGTGTGGCAGA-CCTGAGTTAAGATCTTTTTCTGTTAACTC  174

seq1  AATTCAGTCTTACAAGCCCATGAATGCATGTTCCACATTACCTATTCAGT  250
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTC-TACAAGCCCATGAATGCATGTTCCACATTACCTATTCAGT  223

seq1  CTTACATAGAAAAGAACTGAAATATAAGAAACGTATGGCAACTCTATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATAGAAAAGAACTGAAATATAAGAAACGTATGGCAACTCTATTAG  273

seq1  CTCTAAGTGCTACAGCTGGAACTTAAAATCCCAATTTGTCCGTCAAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGTGCTACAGCTGGAACTTAAAATCCCAATTTGTCCGTCAAGCTT  323

seq1  AGCAAAAATTCATTCTTACATAACAAGATTTAGAACATTCCACATTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAATTCATTCTTACATAACAAGATTTAGAACATTCCACATTTGCA  373

seq1  TAATGTTTCAAGACTCATCTACACATAGTAAGTTAGATTTCCTCATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTCAAGACTCATCTACACATAGTAAGTTAGATTTCCTCATTTTG  423

seq1  TTATTATCCTAATCCTGTAATAGCCAGGACAATCTTTTATGATGCAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATCCTAATCCTGTAATAGCCAGGACAATCTTTTATGATGCAAGAT  473

seq1  TCTATTTGGTAAGCTGAATTTTTTTCTGATATCCCACCCTGTAAAGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTGGTAAGCTGAATTTTTTTCTGATATCCCACCCTGTAAAGACTG  523

seq1  TTATAACTGGTAGGAACATAATGTTGACAGGGAAAATTTTCAACAGAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACTGGTAGGAACATAATGTTGACAGGGAAAATTTTCAACAGAGTC  573

seq1  ATATCTATATATTTGAATATATAGTGTTAGATTGTTTTCAGTCAAGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATATATTTGAATATATAGTGTTAGATTGTTTTCAGTCAAGTATG  623

seq1  AACTAGAAGACACACCCAACATTATTAGCAGCATGTTTATGTGTAAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAGACACACCCAACATTATTAGCAGCATGTTTATGTGTAAGTAG  673

seq1  GAATTTTTAACAAGACTCTTATTTGTTCAAACAAAGAAGCCATAGGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTAACAAGACTCTTATTTGTTCAAACAAAGAAGCCATAGGAAAG  723

seq1  ATTAAAAACAAGTTTGATCTTTTGAATGTGCTGTTAAATCTGGTTTCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAACAAGTTTGATCTTTTGAATGTGCTGTTAAATCTGGTTTCTGA  773

seq1  TTAGTTTATTTTCTGTGTTTTTATGAAGGAAATTAGTATATTGCTTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTATTTTCTGTGTTTTTATGAAGGAAATTAGTATATTGCTTTCTT  823

seq1  ATAGTTGTTTGGGCCTCAGTAGTTATGCAGTTAATAGTTCCCCTTTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGTTTGGGCCTCAGTAGTTATGCAGTTAATAGTTCCCCTTTTTGT  873

seq1  TCTATCTTATTGAAAAAATTTAGGATACTGATAATAATACTCCTCTAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTATTGAAAAAATTTAGGATACTGATAATAATACTCCTCTAAAC  923

seq1  TTCTTATAGAATTC  964
      ||||||||||||||
seq2  TTCTTATAGAATTC  937

seq1: chr5_70073627_70074622
seq2: B6Ng01-035O09.g_69_1060

seq1  GAATTCTACAGACCATGTTTTCTGCAAAAGCTGAAGTGTTAGTTTTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGACCATGTTTTCTGCAAAAGCTGAAGTGTTAGTTTTGAAA  50

seq1  AGGAATACACAAATTAGAGATTTGATCTGCCCCAATTTATGCTGAGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATACACAAATTAGAGATTTGATCTGCCCCAATTTATGCTGAGATAT  100

seq1  GACGTGATCTATTGTGTTCCAATGGAGTTGTATTAGACTGATTTGTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGATCTATTGTGTTCCAATGGAGTTGTATTAGACTGATTTGTTGGT  150

seq1  TTCCATAACAAATGCCGTTGCTCTCTATACTTAAATAAAAATATTATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAACAAATGCCGTTGCTCTCTATACTTAAATAAAAATATTATTTG  200

seq1  GTTCATAATTTTGATGGCTGAGGCCAAGTTGCATGGAGGTGGACTCTAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAATTTTGATGGCTGAGGCCAAGTTGCATGGAGGTGGACTCTAAC  250

seq1  ATTAGTTCTTTGTATTGTTTGCCATCATTGTAGAGAGGAAGAGATCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTCTTTGTATTGTTTGCCATCATTGTAGAGAGGAAGAGATCATAT  300

seq1  GGCCAGATGGGAAGACAGTGTGGAGATATCAGCATTGCTCTGTGTAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGATGGGAAGACAGTGTGGAGATATCAGCATTGCTCTGTGTAAATT  350

seq1  CCTCTCTCAGGATCTCATTGGATCTCACTAAAGTTATGGTTATTGTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCAGGATCTCATTGGATCTCACTAAAGTTATGGTTATTGTTTTC  400

seq1  TAAGGGAAGCAAACTTAAATGCCTCCAACACCTCATACTAGACCCCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAAGCAAACTTAAATGCCTCCAACACCTCATACTAGACCCCATGG  450

seq1  TTAAAGATTCTATCATTTCCATATCACTTTACTGGCAACCAAGTCTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATTCTATCATTTCCATATCACTTTACTGGCAACCAAGTCTCTAA  500

seq1  TGTCTTTAAAGTATACAGTCAAAGCATTTGCACAGCATAGCCAACATGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTAAAGTATACAGTCAAAGCATTTGCACAGCATAGCCAACATGCC  550

seq1  AACAACTGGAAATATTTATAAGGAACCAAGACTAATTATTTTACTTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTGGAAATATTTATAAGGAACCAAGACTAATTATTTTACTTTTGT  600

seq1  TTTATGATTTTGTGGTGAATTGTTTTAAGAT-GATGATGTATGGAAT-AA  648
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  TTTATGATTTTGTGGTGAATTGTTTTAAGATGGATGATGTATGGAATAAA  650

seq1  ATCTTCCTTACTGTATGCTCTGT-GTGGCCATTTACAG-AATATTTGACT  696
      |||||| |||||||||||||||| |||||||||||||| |||||||||||
seq2  ATCTTCTTTACTGTATGCTCTGTGGTGGCCATTTACAGAAATATTTGACT  700

seq1  TCAGTTAAG-TTTCCTCTTATTC-TTGTTTTGGTTTCTTCCATTTTCAGT  744
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  TCAGTTAAGTTTTCCTCTTATTCTTTGTTTTGGTTTCTTCCATTTTCAGT  750

seq1  C-TTGGCTTCCTTGTCAATAAAATGAAAACGTCACAGTA-TGTATTTACA  792
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTTGGCTTCCTTGTCAATAAAATGAAAACGTCACAGTATTGTATTTACA  800

seq1  G-ATTCACTCTGAA-GGTCAACTGAAGACTTTGAACAAGGCTAGGGACTA  840
      | |||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGAAGGGTCAACTGAAGACTTTGAACAAGGCTAGGGACTA  850

seq1  AAATAGCACATTAATCTTAAAAGCACTCAGCTGAGTGAATAGATGTTGTT  890
      |||||||||||||||  |||||||||||||||| ||||||||||||||||
seq2  AAATAGCACATTAATTCTAAAAGCACTCAGCTG-GTGAATAGATGTTGTT  899

seq1  CTTCTTGTCATTGATGACAAAGCTCCATTAAAAGATTTTATTTCTCCTTT  940
      |||||||||| ||||||| ||||| ||||||||||||||| |||||||||
seq2  CTTCTTGTCA-TGATGAC-AAGCTTCATTAAAAGATTTTA-TTCTCCTTT  946

seq1  TATTTGCTTTCCATAAACATGCCAAATGGCTCTATAATTAGCAGTGAGAA  990
         ||||||| ||| |||||||| ||||   ||  |||||||| |||| |
seq2  --ATTGCTTT-CAT-AACATGCC-AATG---CTCAAATTAGCA-TGAG-A  986

seq1  TCTGGA  996
      ||||||
seq2  TCTGGA  992