BAC Information

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BAC

Clone NameB6Ng01-036B13
Chromosome5 (Build37)
Map Location 43,548,221 - 43,549,244
singlet/doubletsinglet
Overlap geneEG665934
Upstream geneEG636612, LOC433883
Downstream geneCpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036B13.bB6Ng01-036B13.g
ACCDH864383DH864384
length1,1251,000
definitionDH864383|Mus musculus domesticus DNA, BAC clone: B6Ng01-036B13, 5' end.DH864384|Mus musculus domesticus DNA, BAC clone: B6Ng01-036B13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
tttcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttaggtcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttattacaattgc
tctgtagtaaagctttaggtctggcatggtgattctgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagattgaagttttatcataca
gatctttcactcttagttagagtcacgccagatattttatatatttgtga
ctattggagaaggtgttgtttccctaatttctttctcagcctgtttaatc
tttgtaaaaagaaaggccattgacttgtttgagttatttaattcaagcta
attcccgaagctggtttacagtatagaagtctcctggtgaaattttaagg
ggtccttattatatcaactcatcat
gaattcattcttcagggatgagaaaatgcactatagcctctgagcagtgt
ctggtcctggctccccatcatagatgatgtaacctttgtgatagtcacat
tatgggaggtctaaagcatcaaacctattagatggactcccaccccagat
ccacacttttgccacagccccctcactcattcctgtctgttttattcctc
ttccaacagaggtcatttcaccctctttactcctggttgaacccatgcat
acataaacatacacacataatatacatctatgtatatttccccatttcac
ttctgtttgaaacagaagaacaaaatgtaaatgcaatatgccactttctt
agaaaatataaatataagttcatttaaaaaaataagatggcaatgcaaac
aaagccaatactgcataaaacccacttctttttttaaaaaagatttattt
atttattatatgtaagtacactgtagctgccttcagacaccccagaagag
agcatcagatctcattacagatggttgtgagccaccatgtggttgctggg
atttgaactcaggatcttcggaagagcagtcagtgctcttaatcgctgag
ccatctctccaacaccaacccacttctttttatttggaacaaaataagta
cctgcctcctcttgggtggattaaccgctgtagccagtatgcctgcattt
ctgttatctacaatctgtcataaatattaattacttattgtgaataagtg
tcaacccatcagaaatcctaatgttttcctcaagtgggctccatttttgg
tggtgttccaatcataaatgagcttggatcaacttgggttttccttctgc
ctcagatgttttcacgagattctgatgcaaagagaaaaacatttgctgtc
tctgggttttgagcatgttggctgaaagcacacagaaaaggtagagtcat
ctcatgactagtgaagtagatgtctcttgcatgtgactctccgtgctggg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_43548221_43549244
seq2: B6Ng01-036B13.g_69_1068 (reverse)

seq1  CCCAGCACTGGAGAGTCACATGTGGCAAAGAGACCATTCTACTTCACCTA  50
      |||||||| |||||||||||||     |||||||   ||||||||| |||
seq2  CCCAGCAC-GGAGAGTCACATG----CAAGAGAC--ATCTACTTCA-CTA  42

seq1  GTCCATTGAGAATGACCTTCTAACCCTTTTCTGGTGTGCCTCTCAGCCAA  100
      |||   |||| |||||  ||||  |||||||| ||||| || |||||| |
seq2  GTC--ATGAG-ATGAC--TCTA--CCTTTTCT-GTGTG-CTTTCAGCC-A  82

seq1  ACATTGCTCAAAAACCCCAGAGACAGGCAAATGTTTTTCTCTTTGCATCA  150
      ||| |||||||||  |||||||||| ||||||||||||||||||||||||
seq2  ACA-TGCTCAAAA--CCCAGAGACA-GCAAATGTTTTTCTCTTTGCATCA  128

seq1  GAATCTCGGTGAAAACATCTGAGGCAGAAGGAAAACCCAAGTTGATCCAA  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTC-GTGAAAACATCTGAGGCAGAAGGAAAACCCAAGTTGATCCAA  177

seq1  GCTCATTTATGATTGGAACACCACCAAAAATGGAGCCCACTTGAGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTATGATTGGAACACCACCAAAAATGGAGCCCACTTGAGGAAAA  227

seq1  CCTTAGGATTTCCTGATGGGTTGACACTTATTCACAATAAGTAATTAATA  300
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGATTT-CTGATGGGTTGACACTTATTCACAATAAGTAATTAATA  276

seq1  TTTATGACAGATTGTAGATAACAGAAATGCAGGCATACTGGCTACAGCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACAGATTGTAGATAACAGAAATGCAGGCATACTGGCTACAGCGG  326

seq1  TTAATCCACCCAAGAGGAGGCAGGTACTTATTTTGTTCCAAATAAAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCACCCAAGAGGAGGCAGGTACTTATTTTGTTCCAAATAAAAAGA  376

seq1  AGTGGGTTGGTGTTGGAGAGATGGCTCAGCGATTAAGAGCACTGACTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTTGGTGTTGGAGAGATGGCTCAGCGATTAAGAGCACTGACTGCT  426

seq1  CTTCCGAAGATCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGAAGATCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAA  476

seq1  CCATCTGTAATGAGATCTGATGCTCTCTTCTGGGGTGTCTGAAGGCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTAATGAGATCTGATGCTCTCTTCTGGGGTGTCTGAAGGCAGCT  526

seq1  ACAGTGTACTTACATATAATAAATAAATAAATCTTTTTTAAAAAAAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTACTTACATATAATAAATAAATAAATCTTTTTTAAAAAAAGAAG  576

seq1  TGGGTTTTATGCAGTATTGGCTTTGTTTGCATTGCCATCTTATTTTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTATGCAGTATTGGCTTTGTTTGCATTGCCATCTTATTTTTTTA  626

seq1  AATGAACTTATATTTATATTTTCTAAGAAAGTGGCATATTGCATTTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACTTATATTTATATTTTCTAAGAAAGTGGCATATTGCATTTACAT  676

seq1  TTTGTTCTTCTGTTTCAAACAGAAGTGAAATGGGGAAATATACATAGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTCTGTTTCAAACAGAAGTGAAATGGGGAAATATACATAGATG  726

seq1  TATATTATGTGTGTATGTTTATGTATGCATGGGTTCAACCAGGAGTAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATGTGTGTATGTTTATGTATGCATGGGTTCAACCAGGAGTAAAG  776

seq1  AGGGTGAAATGACCTCTGTTGGAAGAGGAATAAAACAGACAGGAATGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAAATGACCTCTGTTGGAAGAGGAATAAAACAGACAGGAATGAGT  826

seq1  GAGGGGGCTGTGGCAAAAGTGTGGATCTGGGGTGGGAGTCCATCTAATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGCTGTGGCAAAAGTGTGGATCTGGGGTGGGAGTCCATCTAATAG  876

seq1  GTTTGATGCTTTAGACCTCCCATAATGTGACTATCACAAAGGTTACATCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATGCTTTAGACCTCCCATAATGTGACTATCACAAAGGTTACATCA  926

seq1  TCTATGATGGGGAGCCAGGACCAGACACTGCTCAGAGGCTATAGTGCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGATGGGGAGCCAGGACCAGACACTGCTCAGAGGCTATAGTGCATT  976

seq1  TTCTCATCCCTGAAGAATGAATTC  1024
      ||||||||||||||||||||||||
seq2  TTCTCATCCCTGAAGAATGAATTC  1000