BAC Information

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BAC

Clone NameB6Ng01-036F04
Chromosome5 (Build37)7 (Build37)
Map Location 93,901,499 - 93,902,059113,512,264 - 113,512,975
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneScarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3, LOC623798, Ankrd56, Sept11, Ccni, LOC100040826, 2010109A12Rik, Ccng2, LOC632115, EG330129
Downstream geneLOC100040885, LOC666064, LOC100040909, C87414, LOC666075, LOC666077, LOC666081, EG665802, LOC100040408, LOC100040981, EG622719, LOC100041003, BC061212, EG622744, LOC100041032, LOC100041042, LOC624421, AA792892, LOC665521, LOC665551
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036F04.bB6Ng01-036F04.g
ACCDH864536DH864537
length594713
definitionDH864536|Mus musculus domesticus DNA, BAC clone: B6Ng01-036F04, 5' end.DH864537|Mus musculus domesticus DNA, BAC clone: B6Ng01-036F04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,901,499 - 93,902,059)(113,512,264 - 113,512,975)
sequence
gaattctttcctatgatttctatctccagagttgcctccctttgggtttt
ctttattgtttctacttccaattttagatattggatggttttgttcaatt
ctatcacatgtttgtttgtgttttcttctaattttttaagggatttttgc
gtttcttctttaagtacttctaactgtttagcagtgttttcctgtaattc
tttaagggattttttgtgcttcctctttaaggacttctacctgtttagca
gtgttctcctgtatttctttaagtgagttattaatgtccttcttaaaatc
ctctaccagcatcataagatatgatcttaaatatgaatcttgcttttctg
gtgtgttggggtatccaggactcactgtgatgggagtgctgtgttctgat
gatgctaattggtcttggtttctgttagtaagattcttacatttggcttt
tgccatctggtaatctctggtgttagttgttatagctgtctctggctgga
gtttattcctcctgtgattctgttagtctctgtcagcactcctggggagc
ccaactctctcctgagtctcagttgtcagagcactctctgcagg
gaattccagagccaagaagcgggagtgggtgagtatgggagcagggcaga
gggagagtatagggaactttcgggatagcatttgaaatatatataaagaa
aatatgttgaagaataaaatttttttactgaactcttcttcaccccagag
cccgacccctcccatctagagattgttcccggaacactcctaaacttttc
accccagaatgcattcctgaactcctcaccctaaagttcgaaccttccca
actaaaaactgttccaagaacatttttgagataaaggcctcctgaaacaa
cctcaaaatgaaccaggtacattgccaaatgataggacatgaccccttag
ttacgtagattcctttggcagaactccttgtcccttggcagaacccccta
gtgatgtaaacttgtactttccctgccccgttctccccctttaagtttta
ctatataagcctgtgaaaaatttttggctgtccgtcgattctcctctaca
ccactaggtgtatgagtttcgaccccagagctctggtctgtgtgctttca
tgttgctgcttttattaaatcttaccttctacattttatgtatggtctca
gtgtcttcttgggtccgcggctgtcccgggacttaagtgcctgagtggag
ggtctcccttcgggggtctttcatttgtgcattggccgggaatcacgcga
ccacccagaggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_93901499_93902059
seq2: B6Ng01-036F04.b_49_354 (reverse)

seq1  CTGGTAGAGGATTTTAAGAAGGGTATTAATAACTCACTTAAAGGGCTGGT  50
                                                        
seq2  --------------------------------------------------  0

seq1  AAGATGGCTCAGTGGTTAAGAGTACCGACTGCTCTTCCAAAGGTCCTGAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTAAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TAACTCTCTTCTGGAGTGTCTACAGAGCCATATATAATAAATAAATGAAT  200
                ||||         ||||  || | ||| ||  | ||    
seq2  ----------CTGG--------TAGAG-GAT-TTTAAGAAGGACAT----  26

seq1  CTTTAAAAAAAATAACTCACTTAAAGAAATATAGCACTTGGGAGGCAGAG  250
                ||||||||||||||||||||| ||                
seq2  ---------TAATAACTCACTTAAAGAAATACAG----------------  51

seq1  GTGGGCACATTTATGAGTTCGAGGCAAGCCTAGTCTACAAAGTGAGTCCC  300
        | | |||                         || | ||         
seq2  --GAGAACA-------------------------CTGCTAA---------  65

seq1  AGGACAGCCAGGGCCATACCGAAAACCCTGTCTCAAAAAACAAAAACAAA  350
         ||||  ||            ||  |   || ||| |  ||  |||||
seq2  ---ACAGGTAG------------AAGTC---CTTAAAGAGGAAGCACAAA  97

seq1  AACAAACCAACAAAAGAAATACAGGAGACCACTGCTATACAGGTAGAAGT  400
         ||| |    |||||| ||||||| | |||||||| |||| |||||||
seq2  ---AAATCCCTTAAAGAATTACAGGAAAACACTGCTAAACAGTTAGAAGT  144

seq1  CCTTAGGGAGGAAACACAAAAATCCCTTAAAGAAATACAGGAAAACACAA  450
       ||||  || ||||| ||||||||||||||| || || | ||||||||||
seq2  ACTTAAAGAAGAAACGCAAAAATCCCTTAAAAAATTAGAAGAAAACACAA  194

seq1  ATAAACAGGTGATGGAATTGAACAAAATCATCCAAGATCTAAAAATGGAA  500
      | ||||| ||||| ||||||||||||| ||||||| |||||||| |||||
seq2  ACAAACATGTGATAGAATTGAACAAAACCATCCAATATCTAAAATTGGAA  244

seq1  GTGGAAACAATAAAGAAAACCC-AATGGAGGCAACTCTGGAGAAAGAAAT  549
      || ||||||||||||||||||| || ||||||||||||||||| ||||||
seq2  GTAGAAACAATAAAGAAAACCCAAAGGGAGGCAACTCTGGAGATAGAAAT  294

seq1  CCTAGGAAAGAA  561
      | ||||||||||
seq2  CATAGGAAAGAA  306

seq1: chr7_113512264_113512975
seq2: B6Ng01-036F04.g_66_778

seq1  GAATTCCAGAGCCAAGAAGCGGGAGTGGGTGAGTATGGGAGCAGGGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCCAAGAAGCGGGAGTGGGTGAGTATGGGAGCAGGGCAGA  50

seq1  GGGAGAGTATAGGGAACTTTCGGGATAGCATTTGAAATATATATAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGTATAGGGAACTTTCGGGATAGCATTTGAAATATATATAAAGAA  100

seq1  AATATGTTGAAGAATAAAATTTTTTTACTGAACTCTTCTTCACCCCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTGAAGAATAAAATTTTTTTACTGAACTCTTCTTCACCCCAGAG  150

seq1  CCCGACCCCTCCCATCTAGAGATTGTTCCCGGAACACTCCTAAACTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACCCCTCCCATCTAGAGATTGTTCCCGGAACACTCCTAAACTTTTC  200

seq1  ACCCCAGAATGCATTCCTGAACTCCTCACCCTAAAGTTCGAACCTTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGAATGCATTCCTGAACTCCTCACCCTAAAGTTCGAACCTTCCCA  250

seq1  ACTAAAAACTGTTCCAAGAACATTTTTGAGATAAAGGCCTCCTGAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAACTGTTCCAAGAACATTTTTGAGATAAAGGCCTCCTGAAACAA  300

seq1  CCTCAAAATGAACCAGGTACATTGCCAAATGATAGGACATGACCCCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAATGAACCAGGTACATTGCCAAATGATAGGACATGACCCCTTAG  350

seq1  TTACGTAGATTCCTTTGGCAGAACTCCTTGTCCCTTGGCAGAACCCCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTAGATTCCTTTGGCAGAACTCCTTGTCCCTTGGCAGAACCCCCTA  400

seq1  GTGATGTAAACTTGTACTTTCCCTGCCCCGTTCTCCCCCTTTAAGTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTAAACTTGTACTTTCCCTGCCCCGTTCTCCCCCTTTAAGTTTTA  450

seq1  CTATATAAGCCTGTGAAAAA-TTTTGGCTGTCCGTCGATTCTCCTCTACA  499
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTATATAAGCCTGTGAAAAATTTTTGGCTGTCCGTCGATTCTCCTCTACA  500

seq1  CCACTAGGTGTATGAGTTTCGACCCCAGAGCTCTGGTCTGTGTGCTTTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGGTGTATGAGTTTCGACCCCAGAGCTCTGGTCTGTGTGCTTTCA  550

seq1  TGTTGCTGC-TTTATTAAATCTTACCTTCTACATTTTATGTATGGTCTCA  598
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGCTTTTATTAAATCTTACCTTCTACATTTTATGTATGGTCTCA  600

seq1  GTGTCTTCTTGGGTCCGCGGCTGTCCCGGGACTTAAGTGCCTGAGT-GAG  647
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGTCTTCTTGGGTCCGCGGCTGTCCCGGGACTTAAGTGCCTGAGTGGAG  650

seq1  GGTCTCCCTTCGGGGGTCTTTCATTTGGTGCATTGGCCGGGAATCAGCGC  697
      |||||||||||||||||||||||||| ||||||||||||||||||| |||
seq2  GGTCTCCCTTCGGGGGTCTTTCATTT-GTGCATTGGCCGGGAATCA-CGC  698

seq1  GACCACCCAGAGGTC  712
      |||||||||||||||
seq2  GACCACCCAGAGGTC  713