BAC Information

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BAC

Clone NameB6Ng01-036J02
Chromosome5 (Build37)
Map Location 47,203,806 - 47,204,726
singlet/doubletsinglet
Overlap genenone
Upstream geneLcorl, EG666103
Downstream geneLOC100040865
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036J02.bB6Ng01-036J02.g
ACCDH864700DH864701
length427898
definitionDH864700|Mus musculus domesticus DNA, BAC clone: B6Ng01-036J02, 5' end.DH864701|Mus musculus domesticus DNA, BAC clone: B6Ng01-036J02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgactggcttgacccttctatgggttttatgcagtcagctacagttgctg
tggatttatgaatgccagtcttgtcatatccagaagacaatgttccactc
tggtccttctcaacctctggctcactcaatcatttcaacctttcttccat
gatggttcccgagccttggaaatgtttaatgtaggtgtcctatttgtggc
tgaacactctattggcacttgttctacacactttgatcagttgtaagtta
tgttataagttgtgagttatgtcctaagttatagattgtaagtatgttaa
ccatcatccactgcaaaaagcaagcaagcaaacaaacaaaaaaacaaaca
aacccaattattttgtgaggtaggagagcagtactaatttatgttggaag
agggagagagagagagagagagagaga

gaattccagttcatttattgttctgctgagatacttttaatcttaattat
cttcccaggtaaggtgatagaataatgaaaccacatgctggagcaataat
tgttgtatataggaaaggaccatttcattaaaggtttagcaattagtgaa
tgaattaattaatgatagatgacatttcatacttagatatggtaaattcc
cttctaccgactaagcttcttgaaactgtttcatcaatgagcaatgaagg
gaatgagttacagaacagaagaaatagaaatacgtaaagtgttgttaaat
gaattgaaagaaacacgtaagaacaaaaaatgataatctggttaaggcaa
aggatgatgaggatcttaacgaagacaaatgaaaatgtatgtatgaaata
caaagaagacatccaacaggtttgatagttatggcagaatcagactttga
gataatattctctttacaaaccaagaatgatttttcacaagagtctatag
cagtcttccagagagcaacaccagaaagaaaagaagaagccttctaaatg
gtgaagaatatttgctacacttctccaaggaagaaaacattaaataaaga
tcagaaaaatgccactttttaggtcatcattttttaaacttctcaaaaca
tattagcatgttaaattggctagcacctattctgtataatgaactgtgta
aagtgtaccattcaaaaacatttggccatgcattagtttgtttgcaaata
cctattaactattggcattagtactttcatttatgacaaaggcatacaaa
acaatccaacatcaactaacaaaaactgatgctgtcacttataaaggagc
attctttggtacattctagaaggtgggatctgtcccatgtgagtagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_47203806_47204726
seq2: B6Ng01-036J02.g_67_964 (reverse)

seq1  CACTACTCACCATCGTGACAGATCCCATCCTTCTAGAACTGTACACAAAG  50
      ||||||||| ||| | ||||||||||| |||||||||| ||||| |||||
seq2  CACTACTCA-CAT-GGGACAGATCCCA-CCTTCTAGAA-TGTAC-CAAAG  45

seq1  TAAATGCTTCCTTCTATAAGTTGACCAGCCATCAGTTTTTTTGTTTGTTT  100
        ||||| ||||| |||||| ||| ||| ||||||||      |||||| 
seq2  --AATGC-TCCTT-TATAAG-TGA-CAG-CATCAGTT------TTTGTTA  82

seq1  GTTTGTTTGGTTTTGTTTTGTTTTGCTTTTTGTCATAATTGAAAAGTAAC  150
      |||  | | |  ||||||||| |  |  |||||||||| || ||||| ||
seq2  GTTGATGTTGGATTGTTTTGTATGCC--TTTGTCATAAATG-AAAGT-AC  128

seq1  TAATG-CAATAGTTTTAATAGGTTATTTTGCAAACAAACTAATGCATGGC  199
      ||||| ||||||  |||||||||   ||||||||||||||||||||||||
seq2  TAATGCCAATAG--TTAATAGGT--ATTTGCAAACAAACTAATGCATGGC  174

seq1  CAAATG-TTTTGAATGGTACACTTAACACAGTTCATATTACAGAATA-GT  247
      |||||| ||||||||||||||||| |||||||||||  ||||||||| ||
seq2  CAAATGTTTTTGAATGGTACACTTTACACAGTTCATTATACAGAATAGGT  224

seq1  GCTAG-CAATTTAACATGCTAATATGTTTTGAGAAGTTTAAAAAATGATG  296
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCAATTTAACATGCTAATATGTTTTGAGAAGTTTAAAAAATGATG  274

seq1  ACCTAAAAAGTGGCATTTTTCTGATCTTTATTTAATGTTTTCTTCCTTGG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAAAAGTGGCATTTTTCTGATCTTTATTTAATGTTTTCTTCCTTGG  324

seq1  AGAAGTGTAGCAAATATTCTTCACCATTTAGAAGGCTTCTTCTTTTCTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGTAGCAAATATTCTTCACCATTTAGAAGGCTTCTTCTTTTCTTT  374

seq1  CTGGTGTTTGCTCTCTGGAAGACTGCTATAGACTCTTGTGAAAAATCATT  446
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTG-TTGCTCTCTGGAAGACTGCTATAGACTCTTGTGAAAAATCATT  423

seq1  CTTGGTTTGTAAAGAGAATATTATCTCAAAGTCTGATTCTGCCATAACTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTGTAAAGAGAATATTATCTCAAAGTCTGATTCTGCCATAACTA  473

seq1  TCAAACCTGTTGGATGTCTTCTTTGTATTTCATACATACATTTTCATTTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCTGTTGGATGTCTTCTTTGTATTTCATACATACATTTTCATTTG  523

seq1  TCTTCGTTAAGATCCTCATCATCCTTTGCCTTAACCAGATTATCATTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGTTAAGATCCTCATCATCCTTTGCCTTAACCAGATTATCATTTTT  573

seq1  TGTTCTTACGTGTTTCTTTCAATTCATTTAACAACACTTTACGTATTTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTACGTGTTTCTTTCAATTCATTTAACAACACTTTACGTATTTCT  623

seq1  ATTTCTTCTGTTCTGTAACTCATTCCCTTCATTGCTCATTGATGAAACAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCTGTTCTGTAACTCATTCCCTTCATTGCTCATTGATGAAACAG  673

seq1  TTTCAAGAAGCTTAGTCGGTAGAAGGGAATTTACCATATCTAAGTATGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGAAGCTTAGTCGGTAGAAGGGAATTTACCATATCTAAGTATGAA  723

seq1  ATGTCATCTATCATTAATTAATTCATTCACTAATTGCTAAACCTTTAATG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATCTATCATTAATTAATTCATTCACTAATTGCTAAACCTTTAATG  773

seq1  AAATGGTCCTTTCCTATATACAACAATTATTGCTCCAGCATGTGGTTTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTCCTTTCCTATATACAACAATTATTGCTCCAGCATGTGGTTTCA  823

seq1  TTATTCTATCACCTTACCTGGGAAGATAATTAAGATTAAAAGTATCTCAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTATCACCTTACCTGGGAAGATAATTAAGATTAAAAGTATCTCAG  873

seq1  CAGAACAATAAATGAACTGGAATTC  921
      |||||||||||||||||||||||||
seq2  CAGAACAATAAATGAACTGGAATTC  898


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