BAC Information

Click to search

BAC

Clone NameB6Ng01-036K01
Chromosome5 (Build37)
Map Location 144,208,554 - 144,264,132
singlet/doubletdoublet
Overlap geneLOC670671, Daglb
Upstream geneLOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869
Downstream geneRac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036K01.bB6Ng01-036K01.g
ACCDH864740DH864741
length569513
definitionDH864740|Mus musculus domesticus DNA, BAC clone: B6Ng01-036K01, 5' end.DH864741|Mus musculus domesticus DNA, BAC clone: B6Ng01-036K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,263,558 - 144,264,132)(144,208,554 - 144,209,072)
sequence
tgcttcgtgtgcccacctcgctctgtactgggcagcagaacagcagccaa
acctcgaacagaagagaatatccattagtgaggctccacatggggcagat
ctgagtcgccctcagtgggtgggcgtgactcgagggtcaccatactcacc
tccctgaaccaccctcctcttccaggtggatgatcctgccaggtgggtac
agagtggggtacttggtgggggagtccagtggggagtcgctggaacagta
gcccggggagtatcgggttagaagtgtctgctctccaagaagaggctgag
tcagggccccctgggtgccctcatccagttcagttggaaagttatcaggg
cttcctccgaacagtccgtaccaacagccatgcagcaagatcttgtacta
aaaggcgagatccaagggctaggttggtctggtgctgggtggcagccttc
aggcagccctgttttaccacaaccatagagccaccgtacttggagcaata
gccaaaacccaaatcgtgacacacacacgtgtgtgtgtgtgtgtatatat
atatatatatgtatgtgtg
cttatccctttctctcttacatcacttgcatcaagatattgtctctgtta
atgctacttgtgtggatgtcattaccttggggcaaatggctgtattcttt
aaggatgtagggtcaaagctgctcactccaacttgcttcccctgcaaacc
ttttcatgtatactattattcttgttggaagcagaattgtatttgtcata
atttaagctattacatattagggcttggcagctccacaccaaagcccttc
tgttggaagtactcacccttgaactaaagaaggaaggcaaagtatatgtt
ctctctctatcagtaagagggcttagggacagctatcctctctggcttct
ctgttgtgtaacacatcaggagctggtttagagaacaacgtgaggaaata
atgtttgtccttgggatctgatgagctggaaaacatcttgaaactgaatt
tcaagagaagccgatgagctaggtctgtgttgcaagatgtaggttggggg
agtggggctgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_144263558_144264132
seq2: B6Ng01-036K01.b_41_615 (reverse)

seq1  CACACATACATATATATATATATATACACACACACACACACGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACATATATATATATATATACACACACACACACACGTGTGTGTG  50

seq1  TCACGATTTGGGTTTTGGCTATTGCTCCAAGTACGGTGGCTCTATGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGATTTGGGTTTTGGCTATTGCTCCAAGTACGGTGGCTCTATGGTTG  100

seq1  TGGTAAAACAGGGCTGCCTGAAGGCTGCCACCCAGCACCAGACCAACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAAACAGGGCTGCCTGAAGGCTGCCACCCAGCACCAGACCAACCTA  150

seq1  GCCCTTGGATCTCGCCTTTTAGTACAAGATCTTGCTGCATGGCTGTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGGATCTCGCCTTTTAGTACAAGATCTTGCTGCATGGCTGTTGGT  200

seq1  ACGGACTGTTCGGAGGAAGCCCTGATAACTTTCCAACTGAACTGGATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACTGTTCGGAGGAAGCCCTGATAACTTTCCAACTGAACTGGATGAG  250

seq1  GGCACCCAGGGGGCCCTGACTCAGCCTCTTCTTGGAGAGCAGACACTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCAGGGGGCCCTGACTCAGCCTCTTCTTGGAGAGCAGACACTTCT  300

seq1  AACCCGATACTCCCCGGGCTACTGTTCCAGCGACTCCCCACTGGACTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCGATACTCCCCGGGCTACTGTTCCAGCGACTCCCCACTGGACTCCC  350

seq1  CCACCAAGTACCCCACTCTGTACCCACCTGGCAGGATCATCCACCTGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAAGTACCCCACTCTGTACCCACCTGGCAGGATCATCCACCTGGAA  400

seq1  GAGGAGGGTGGTTCAGGGAGGTGAGTATGGTGACCCTCGAGTCACGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGTGGTTCAGGGAGGTGAGTATGGTGACCCTCGAGTCACGCCCA  450

seq1  CCCACTGAGGGCGACTCAGATCTGCCCCATGTGGAGCCTCACTAATGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGAGGGCGACTCAGATCTGCCCCATGTGGAGCCTCACTAATGGAT  500

seq1  ATTCTCTTCTGTTCGAGGTTTGGCTGCTGTTCTGCTGCCCAGTACAGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTCTGTTCGAGGTTTGGCTGCTGTTCTGCTGCCCAGTACAGAGC  550

seq1  GAGGTGGGCACACGAAGCAGAATTC  575
      |||||||||||||||||||||||||
seq2  GAGGTGGGCACACGAAGCAGAATTC  575

seq1: chr5_144208554_144209072
seq2: B6Ng01-036K01.g_62_580

seq1  GAATTCCTTATCCCTTTCTCTCTTACATCACTTGCATCAAGATATTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATCCCTTTCTCTCTTACATCACTTGCATCAAGATATTGTCT  50

seq1  CTGTTAATGCTACTTGTGTGGATGTCATTACCTTGGGGCAAATGGCTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAATGCTACTTGTGTGGATGTCATTACCTTGGGGCAAATGGCTGTA  100

seq1  TTCTTTAAGGATGTAGGGTCAAAGCTGCTCACTCCAACTTGCTTCCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAGGATGTAGGGTCAAAGCTGCTCACTCCAACTTGCTTCCCCTG  150

seq1  CAAACCTTTTCATGTATACTATTATTCTTGTTGGAAGCAGAATTGTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTTTTCATGTATACTATTATTCTTGTTGGAAGCAGAATTGTATTT  200

seq1  GTCATAATTTAAGCTATTACATATTAGGGCTTGGCAGCTCCACACCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAATTTAAGCTATTACATATTAGGGCTTGGCAGCTCCACACCAAAG  250

seq1  CCCTTCTGTTGGAAGTACTCACCCTTGAACTAAAGAAGGAAGGCAAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTGTTGGAAGTACTCACCCTTGAACTAAAGAAGGAAGGCAAAGTA  300

seq1  TATGTTCTCTCTCTATCAGTAAGAGGGCTTAGGGACAGCTATCCTCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCTCTCTCTATCAGTAAGAGGGCTTAGGGACAGCTATCCTCTCTG  350

seq1  GCTTCTCTGTTGTGTAACACATCAGGAGCTGGTTTAGAGAACAACGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTGTTGTGTAACACATCAGGAGCTGGTTTAGAGAACAACGTGAG  400

seq1  GAAATAATGTTTGTCCTTGGGATCTGATGAGCTGGAAAACATCTTGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATGTTTGTCCTTGGGATCTGATGAGCTGGAAAACATCTTGAAAC  450

seq1  TGAATTTCAAGAGAAGCCGATGAGCTAGGTCTGTGTTGCAAGATGTAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTCAAGAGAAGCCGATGAGCTAGGTCTGTGTTGCAAGATGTAGGT  500

seq1  TGGGGGAGTGGGGCTGGGG  519
      |||||||||||||||||||
seq2  TGGGGGAGTGGGGCTGGGG  519