BAC Information

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BAC

Clone NameB6Ng01-036L13
Chromosome5 (Build37)
Map Location 55,503,752 - 55,587,651
singlet/doubletdoublet
Overlap genenone
Upstream geneStim2, EG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036L13.bB6Ng01-036L13.g
ACCDH864804DH864805
length1,1211,049
definitionDH864804|Mus musculus domesticus DNA, BAC clone: B6Ng01-036L13, 5' end.DH864805|Mus musculus domesticus DNA, BAC clone: B6Ng01-036L13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,503,752 - 55,504,893)(55,586,591 - 55,587,651)
sequence
gaattcttcctggcatttccaggcttttttttttttttttttgagcactg
tcacttttctatttaacattgagattcctaacttttgcctcagatcactg
tgtaattggccatctgtccatttcattagctcgttctagacagtgacact
ccaggttttttaaccttgaaacatcattatgtctattgcatgatcaactc
caaggagcatttattacgtatctgtatccactgtttttaaatgatgagga
gaaaacaggaatacaaagagaatgatatcttttcattcatacctgctaat
attaaataatgataatcaactacttaacattgcaagtgtcagttatgtac
atgctaggacgagtctctgattcaactgaatatatgactatgagaaattt
atcaatttcttcagttcaaaaatgagagcaacagtgcatattccatttaa
tatatgaattttatgtgctaactaaaattaaatttcagaatttttcacaa
aataatttggacctttgtaaaaataaatgtctgtagaactgcttggaaga
ataatcacacacacacacacacacacacacacacacacacacacacacac
acacacacagttattagtatttcaccataagacaatctgcaaagcataag
ttgtataaagaaaaaattacacctcattgatgagccaatgtctacaactg
agtctctttttgtgacattcagttgttggtaatctattcttgatcacagt
gcttttgcagtaccctcagatgtaggccattactccagtataaaactaca
cagtctctttttctgtattattttaatccattatgatgttgccctccctc
tgaaatgttgacagaaaaataattgagtaatttttgctaatagaaagcag
gtccatttaatttacttggaaagtattcatcatcctatagtaagcagaaa
cccaatatttgtttattttgaaaaccaggctagaaaaagctttgttgttt
agttggagactagagaagaaagatgaaatgaagggtatattggatgctct
tttgctgtaccttgactaatcttgatgaacttaaatcagaatggcagaac
tgttatccagatcttaaggct
gaattcaataggggtgaccttagccaaaatgtccaacaatggagagaggg
gactccaagagtctgcctccagttcacagacagagccgcaagtggaggga
cagggttactaacacaaaaccaaaatttctgacccagaattgtttctgtc
taaaagaactacagggacaaaaattgaaatgagacctaaagaaaggcagc
ccagtgaccagcccaacttgggaccaatatggtagttaaggcagatatat
atatgtgtatatatttactttttttattgtatatttatataatgggtgtt
aatccttttcattctctatattcatcccatctctcatgaccagaacttaa
ctgcttaaatatccttaactgctttcctgtgtattattgtaagtgaccca
tttggtttaattacagtttcatgcccaaacaaaagtaacacaaaccaatt
ggtatctataacactaaagaagatgatattacctgtccagcaattataaa
ttcataatactccctctaggaatggtgtgacattatgggtccctctccca
gtcatgaagaaatgatgatgtaccttgtttatagatattatgcatagagt
cttggctgcagtgatttcttgagtataatgcctttgacatacccggataa
agatgtccttgatgtaattttgattcagtttccttgtggttagtgttgtc
agccatttatgacacatgttttattgactgtatgtataacgtgtttgaaa
aattgtctagtaacattcttttgctaggcttttgaaatcctccttgctgc
ttacttcagtgaatctttataattctgtttatttatgtctcgtcagttat
tatgatttaaccatattttcagcctctttgcattggctttatcccttttg
attatgttcttttgccaactcggatttaaaaattaacattacacatggca
gctcgcattttctgcttagtaaataataaccacacaaacagaaaggatgt
gcagactcatctccattttgtaaataatagacatgtgactatccatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_55503752_55504893
seq2: B6Ng01-036L13.b_45_1165

seq1  GAATTCTTCCTGGCATTTCCAGGCTTTTTTTTTTTTTTTTTTGAGCACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTGGCATTTCCAGGCTTTTTTTTTTTTTTTTTTGAGCACTG  50

seq1  TCACTTTTCTATTTAACATTGAGATTCCTAACTTTTGCCTCAGATCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTCTATTTAACATTGAGATTCCTAACTTTTGCCTCAGATCACTG  100

seq1  TGTAATTGGCCATCTGTCCATTTCATTAGCTCGTTCTAGACAGTGACACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTGGCCATCTGTCCATTTCATTAGCTCGTTCTAGACAGTGACACT  150

seq1  CCAGGTTTTTTAACCTTGAAACATCATTATGTCTATTGCATGATCAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTTTTAACCTTGAAACATCATTATGTCTATTGCATGATCAACTC  200

seq1  CAAGGAGCATTTATTACGTATCTGTATCCACTGTTTTTAAATGATGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGCATTTATTACGTATCTGTATCCACTGTTTTTAAATGATGAGGA  250

seq1  GAAAACAGGAATACAAAGAGAATGATATCTTTTCATTCATACCTGCTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGGAATACAAAGAGAATGATATCTTTTCATTCATACCTGCTAAT  300

seq1  ATTAAATAATGATAATCAACTACTTAACATTGCAAGTGTCAGTTATGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATAATGATAATCAACTACTTAACATTGCAAGTGTCAGTTATGTAC  350

seq1  ATGCTAGGACGAGTCTCTGATTCAACTGAATATATGACTATGAGAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGGACGAGTCTCTGATTCAACTGAATATATGACTATGAGAAATTT  400

seq1  ATCAATTTCTTCAGTTCAAAAATGAGAGCAACAGTGCATATTCCATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTCTTCAGTTCAAAAATGAGAGCAACAGTGCATATTCCATTTAA  450

seq1  TATATGAATTTTATGTGCTAACTAAAATTAAATTTCAGAATTTTTCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAATTTTATGTGCTAACTAAAATTAAATTTCAGAATTTTTCACAA  500

seq1  AATAATTTGGACCTTTGTAAAAATAAATGTCTGTAGAACTGCTTGGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTGGACCTTTGTAAAAATAAATGTCTGTAGAACTGCTTGGAAGA  550

seq1  ATAATCACACACACACACACACACACACACACACACACACACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCACACACACACACACACACACACACACACACACACACACACACAC  600

seq1  ACACACACAGTTATTAGTA-TTCACCATAAGACAATCTGCAAAGCATAAG  649
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACACACACAGTTATTAGTATTTCACCATAAGACAATCTGCAAAGCATAAG  650

seq1  TTGTATAAAGAAAAAATTACACCTCATTGATGAGCCAATGTCTACAACTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATAAAGAAAAAATTACACCTCATTGATGAGCCAATGTCTACAACTG  700

seq1  AGTCTCTTTTTGTGACATTCAGTTGTTGGTAATCTATTCTTGATCACAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTTTTTGTGACATTCAGTTGTTGGTAATCTATTCTTGATCACAGT  750

seq1  GC-TTTGCAGTAACCTTCAGATGTAGCCCATTACTCCAGTATAAAACTAC  798
      || |||||||| ||| |||||||||| |||||||||||||||||||||||
seq2  GCTTTTGCAGT-ACCCTCAGATGTAGGCCATTACTCCAGTATAAAACTAC  799

seq1  ACAGTCTCTTTTTCTGTATTATTTTAATCCA-TATGATGTTGCCTTCCCT  847
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  ACAGTCTCTTTTTCTGTATTATTTTAATCCATTATGATGTTGCCCTCCCT  849

seq1  CTGAAATGTTGACCAGAAAATTATTGAGTTACTTTTTGCATATAGAAAGC  897
      |||||||||||||   ||||| |||||| || |||||||  |||||||||
seq2  CTGAAATGTTGACAGAAAAATAATTGAG-TAATTTTTGCTAATAGAAAGC  898

seq1  AGGTCCATTTAATTGTACTTGGAAAGTATTTCATCATCCTATAGTAAGCA  947
      |||||||||||||| ||||||||||||| |||||||||||||||||||||
seq2  AGGTCCATTTAATT-TACTTGGAAAGTA-TTCATCATCCTATAGTAAGCA  946

seq1  GAAACGCAATATTTGTTTATTTTGAAAACACAGGCTAGAAAAAGCTTTGT  997
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAAACCCAATATTTGTTTATTTTGAAAAC-CAGGCTAGAAAAAGCTTTGT  995

seq1  TGTTATGTTGAGAAGACTAAGAGATAGATAGAAATGATATGATAGGGTAT  1047
      ||||  |||  | ||||| ||||| ||| ||  |||| |||| |||||||
seq2  TGTTTAGTT--GGAGACT-AGAGA-AGAAAG--ATGAAATGA-AGGGTAT  1038

seq1  ATGTGATGGCTCTTTTGGCTTGTTACCTTGACTATATCTGGAATGAACTA  1097
      ||  ||| |||||||| |||   ||||||||||| |||| | ||||||| 
seq2  ATTGGAT-GCTCTTTT-GCT--GTACCTTGACTA-ATCTTG-ATGAACT-  1081

seq1  TAATCCAGAAATGGCAGGGATACCTGTTATCCAGATCTTGAGGCT  1142
      |||  ||| ||||||||    | |||||||||||||||| |||||
seq2  TAAATCAG-AATGGCAG----AACTGTTATCCAGATCTTAAGGCT  1121

seq1: chr5_55586591_55587651
seq2: B6Ng01-036L13.g_64_1112 (reverse)

seq1  AAAATGTGTATAGTCACATGTCTATTATTTTTACAAAATAGGAAGATGAG  50
      ||||  || ||||||||||||||||||  ||||||||||  | |||||||
seq2  AAAA--TGGATAGTCACATGTCTATTA--TTTACAAAAT--GGAGATGAG  44

seq1  TACTTGCACATCCTTTCTGTTTTGTTGTTGTGTTATTATTATCTATGCCA  100
      |   ||||||||||||||||    ||||   |||||||||  ||| | ||
seq2  T--CTGCACATCCTTTCTGT----TTGTGTGGTTATTATTTACTAAG-CA  87

seq1  GAAAATGCGAGCTGCCTTTGTGTAATGTTAAATTTTTAAAATCAGAGTTG  150
      ||||||||||||||||  |||||||||||||  |||| ||||| ||||||
seq2  GAAAATGCGAGCTGCC-ATGTGTAATGTTAA--TTTTTAAATCCGAGTTG  134

seq1  GCAAAAG-ACATAATCAAAAGAGTATAAAGGCAATGCAAAGA-GCTGAAA  198
      ||||||| ||||||||||||| | |||||| ||||||||||| |||||||
seq2  GCAAAAGAACATAATCAAAAG-GGATAAAGCCAATGCAAAGAGGCTGAAA  183

seq1  ATATGTGTAAATCAT-ATAACTGACGAGACATAAATAAACAGAATATATA  247
      |||||  |||||||| ||||||||||||||||||||||||||||| ||||
seq2  ATATGGTTAAATCATAATAACTGACGAGACATAAATAAACAGAAT-TATA  232

seq1  AAGAATTCACTGAAGTAAGCAGCAAGGAGGATTTTCAAAAGCCTAGC-AA  296
      ||| ||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  AAG-ATTCACTGAAGTAAGCAGCAAGGAGGA-TTTCAAAAGCCTAGCAAA  280

seq1  AGGATGTTACTAGAC-ATTTTTCAAACACGTTATACATACAGTCAAT-AA  344
      || |||||||||||| ||||||||||||||||||||||||||||||| ||
seq2  AGAATGTTACTAGACAATTTTTCAAACACGTTATACATACAGTCAATAAA  330

seq1  ACATGTGTCAT-AATGGCTGACAACACTAACCACAAGG-AACTGAATCAA  392
      ||||||||||| |||||||||||||||||||||||||| |||||||||||
seq2  ACATGTGTCATAAATGGCTGACAACACTAACCACAAGGAAACTGAATCAA  380

seq1  AATTACATCAAGGACATCTTTATCCGGGTATGTCAAAGGCATTATACTCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATCAAGGACATCTTTATCCGGGTATGTCAAAGGCATTATACTCA  430

seq1  AGAAATCACTGCAGCCAAGACTCTATGCATAATATCTATAAACAAGGTAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCACTGCAGCCAAGACTCTATGCATAATATCTATAAACAAGGTAC  480

seq1  ATCATCATTTCTTCATGACTGGGAGAGGGACCCATAATGTCACACCATTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATTTCTTCATGACTGGGAGAGGGACCCATAATGTCACACCATTC  530

seq1  CTAGAGGGAGTATTATGAATTTATAATTGCTGGACAGGTAATATCATCTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGGAGTATTATGAATTTATAATTGCTGGACAGGTAATATCATCTT  580

seq1  CTTTAGTGTTATAGATACCAATTGGTTTGTGTTACTTTTGTTTGGGCATG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTGTTATAGATACCAATTGGTTTGTGTTACTTTTGTTTGGGCATG  630

seq1  AAACTGTAATTAAACCAAATGGGTCACTTACAATAATACACAGGAAAGCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTAATTAAACCAAATGGGTCACTTACAATAATACACAGGAAAGCA  680

seq1  GTTAAGGATATTTAAGCAGTTAAGTTCTGGTCATGAGAGATGGGATGAAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGATATTTAAGCAGTTAAGTTCTGGTCATGAGAGATGGGATGAAT  730

seq1  ATAGAGAATGAAAAGGATTAACACCCATTATATAAATATACAATAAAAAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAATGAAAAGGATTAACACCCATTATATAAATATACAATAAAAAA  780

seq1  AGTAAATATATACACATATATATATCTGCCTTAACTACCATATTGGTCCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATATATACACATATATATATCTGCCTTAACTACCATATTGGTCCC  830

seq1  AAGTTGGGCTGGTCACTGGGCTGCCTTTCTTTAGGTCTCATTTCAATTTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGGCTGGTCACTGGGCTGCCTTTCTTTAGGTCTCATTTCAATTTT  880

seq1  TGTCCCTGTAGTTCTTTTAGACAGAAACAATTCTGGGTCAGAAATTTTGG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGTAGTTCTTTTAGACAGAAACAATTCTGGGTCAGAAATTTTGG  930

seq1  TTTTGTGTTAGTAACCCTGTCCCTCCACTTGCGGCTCTGTCTGTGAACTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGTTAGTAACCCTGTCCCTCCACTTGCGGCTCTGTCTGTGAACTG  980

seq1  GAGGCAGACTCTTGGAGTCCCCTCTCTCCATTGTTGGACATTTTGGCTAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGACTCTTGGAGTCCCCTCTCTCCATTGTTGGACATTTTGGCTAA  1030

seq1  GGTCACCCCTATTGAATTC  1061
      |||||||||||||||||||
seq2  GGTCACCCCTATTGAATTC  1049