BAC Information

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BAC

Clone NameB6Ng01-036L18
Chromosome5 (Build37)
Map Location 88,389,786 - 88,556,101
singlet/doubletdoublet
Overlap geneBC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2
Upstream geneLOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3
Downstream geneLOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036L18.bB6Ng01-036L18.g
ACCDH864814DH864815
length996956
definitionDH864814|Mus musculus domesticus DNA, BAC clone: B6Ng01-036L18, 5' end.DH864815|Mus musculus domesticus DNA, BAC clone: B6Ng01-036L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,389,786 - 88,390,622)(88,555,124 - 88,556,101)
sequence
gaattctatgtttagatctgtgccccacttttttaaattgaattttcttg
atatctaggttttgtctttgtttttgttttttagttctttatattttttg
gatattagcctctataggatatgtagttggcaaaaacttttccctttctg
tatgttactgctttgtcctaatgatagtgtccttggctgtaaaatagctt
ttcagtttcatgaggtctcatttacaaatcattgatcttcagtgccagtg
ctaactacattttgttcaggaagtattttcctacgccaacacatttaagg
ctatttctcactttattttctatcaggtacagtttacctggttttgtgtt
gagatcattaatttatttagagttgaactttatgaagggtgataagtatg
gatctatttattcttgtacatacagccatccaattagaccagcaccattt
gttaaggatgatatctttttttttcagtgtgtatttctgacttctttagc
aaaactcaagtgacaatagtatgtggatttatatctgggtctttgatttg
attccattggtcaccatgtctgtttttgtgtgaacgacatgctgttttta
ttactatagctctgtagtacaatctaaggtcaggaatagagatccttcca
gcagatctttttattattcagcttaccagcttcactgacctacttgcttc
tctgacaggtttagcttgaaggttcctaggaaatatctgttggatatggg
gtctggaataacaggataagtagggaggaaagttggaggagatctgtgtc
atccactagagaggaggacatcgaggaaggggaggccacagcagatggtc
tttctcaaagctgagatacattaagggagtgaatttgaggaaagaaaatt
gagtaaaacctgccatttgactactcttccctggcagatgaggctgcagg
aatgtctgctgaactggaagctgaaataaaggcatgagtagagaga
gaattcaggattttttaggagaacatataaccatcacattagtaagccac
agtaattccaaactacatgcttaatatttattcatctacacaaagtcagt
gaagttctaaatcctcaaaaaccatttcattttttagctgatggagaaca
ttacagaaaaacaatctagatcacagtgcagagagcaagagtcttgtgtt
gcccactcacatctgaaacctaagtagcaaagctctatacctaagactca
gggatcactgcagaagatggagatgaaagaatgtaagtgccagaggaaag
acaatgttttctgtgggaatgagtttctttttcattttcttttctttttc
tttttttttttttcattttcaacttgcctttttggttttattgctgggcg
ctactatctctcacctgggaaacgtgcccttatcattagtcttagctctg
tatctcccaatttgtgtagtctttgggatattgtgacttgtactttctac
agaagttggagtgatgttatatgaagcatatggggtattgctttatgcct
cagttggagcagtgttgtctttggtagttgagatagtctcagctgccatg
ctatttctggaagtatcaagctggaggctgttgggagggaggacagatgg
tgttggcatctagacatttgctgatagaagcatcaggtatggttttgatg
gcaaccatagttgaaggagcagaaatggcttccatttgtcagagagtggt
tacagtcctggttccttgggtgattgggaggaggcagaagtgaaattgta
ggcaaagggtatctagacagagtctagactgattggcaaggtttctgttt
ctagagaacaggagcaggtatggctaagccaattactaaagatctacagt
cccaaaacttaatgttatttgcttccatagatgtaggtttactgaggttg
gtcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_88389786_88390622
seq2: B6Ng01-036L18.b_219_1042

seq1  GATAGTGTCCTTGGCTGTAAAATAGCTTTTCAGTTTCATGAGGTCTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGTCCTTGGCTGTAAAATAGCTTTTCAGTTTCATGAGGTCTCATT  50

seq1  TACAAATCATTGATCTTCAGTGCCAGTGCTAACTACATTTTGTTCAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATCATTGATCTTCAGTGCCAGTGCTAACTACATTTTGTTCAGGAA  100

seq1  GTATTTTCCTACGCCAACACATTTAAGGCTATTTCTCACTTTATTTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCCTACGCCAACACATTTAAGGCTATTTCTCACTTTATTTTCTA  150

seq1  TCAGGTACAGTTTACCTGGTTTTGTGTTGAGATCATTAATTTATTTAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTACAGTTTACCTGGTTTTGTGTTGAGATCATTAATTTATTTAGAG  200

seq1  TTGAACTTTATGAAGGGTGATAAGTATGGATCTATTTATTCTTGTACATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTTATGAAGGGTGATAAGTATGGATCTATTTATTCTTGTACATA  250

seq1  CAGCCATCCAATTAGACCAGCACCATTTGTTAAGGATGATATCTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCCAATTAGACCAGCACCATTTGTTAAGGATGATATCTTTTTTT  300

seq1  TTCAGTGTGTATTTCTGACTTCTTTAGCAAAACTCAAGTGACAATAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTGTATTTCTGACTTCTTTAGCAAAACTCAAGTGACAATAGTAT  350

seq1  GTGGATTTATATCTGGGTCTTTGATTTGATTCCATTGGTCACCATGTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTTATATCTGGGTCTTTGATTTGATTCCATTGGTCACCATGTCTG  400

seq1  TTTTTGTGTGAACGACATGCTGTTTTTATTACTATAGCTCTGTAGTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGTGAACGACATGCTGTTTTTATTACTATAGCTCTGTAGTACAA  450

seq1  TCTAAGGTCAGGAATAGAGATCCTTCCAGCAGATCTTTTTATTATTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGTCAGGAATAGAGATCCTTCCAGCAGATCTTTTTATTATTCAGC  500

seq1  TTACCAGCTTCACTGACCTACTTGCTTCTCTGACAGGTTTAGCTTGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGCTTCACTGACCTACTTGCTTCTCTGACAGGTTTAGCTTGAAGG  550

seq1  TTCCTAGGAAATATCTGTTGGATATGGGGTCTGGAATAACAGGATAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGGAAATATCTGTTGGATATGGGGTCTGGAATAACAGGATAAGTA  600

seq1  GGGAGGAAAGTTGGAGGAGATCTGTGTCATCCACTAGAGAGGAGGACATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAAGTTGGAGGAGATCTGTGTCATCCACTAGAGAGGAGGACATC  650

seq1  GAGGAAGGGGAGGCCACAGCAGATGATCTTCTACAAAGCTAGAGATAACA  700
      ||||||||||||||||||||||||| ||||   ||||||| ||||| |||
seq2  GAGGAAGGGGAGGCCACAGCAGATGGTCTTTCTCAAAGCT-GAGAT-ACA  698

seq1  TTAAGGGAGTGAATTTGGAGGAGAGAAAAATTAGAGGTAAAAACCTGCCA  750
      |||||||||||||||| ||||| |||||| | ||     |||||||||||
seq2  TTAAGGGAGTGAATTT-GAGGAAAGAAAATTGAG----TAAAACCTGCCA  743

seq1  TTTGACTACTTCTTTCCCTGGCTAGAATGAGGCTGCAGGAAATGTCTGCT  800
      ||||||||||   ||||||||| || ||||||||||||| ||||||||||
seq2  TTTGACTACT--CTTCCCTGGC-AG-ATGAGGCTGCAGG-AATGTCTGCT  788

seq1  GAACTTGGAAGCTGAGATAAAGCAGTGAGTAGAGAGA  837
      |||| |||||||||| ||||||   ||||||||||||
seq2  GAAC-TGGAAGCTGAAATAAAGGCATGAGTAGAGAGA  824

seq1: chr5_88555124_88556101
seq2: B6Ng01-036L18.g_72_1027 (reverse)

seq1  TCTGACCCAAACCTCATGAAAAACCTACATCTATGGGAAAGCAAATAAAC  50
      |||||||  |||||||    ||||||||||||||||  |||||||| |||
seq2  TCTGACC--AACCTCA--GTAAACCTACATCTATGG--AAGCAAAT-AAC  43

seq1  ACTAAAGTATCTGGGAACTGTAGATACTCTAAGTAATTGGCCTAAGCCAC  100
      | | |||| | |||| ||||||||| || | ||||||||| || ||||| 
seq2  A-TTAAGT-TTTGGG-ACTGTAGAT-CT-TTAGTAATTGG-CTTAGCCA-  86

seq1  TACCTGCTTCCTGTTCTCTTAGAAACATGAACCCTTGCCATTCAGTCTTA  150
      ||||||| |||||||||| |||||||| ||| |||||||| |||||| ||
seq2  TACCTGC-TCCTGTTCTC-TAGAAACA-GAAACCTTGCCAATCAGTC-TA  132

seq1  GACTCTTGTCTTAGATACCCTTCTGCCCTCCATTTCACTTCTGCCTCCTC  200
      ||||| |||| ||||||||||| ||||  | |||||||||||||||||||
seq2  GACTC-TGTC-TAGATACCCTT-TGCCTACAATTTCACTTCTGCCTCCTC  179

seq1  CCAATCACCCAAGGAACCAGGACTGTAACCACTCTCTGACAAAATGGAAG  250
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCAATCACCCAAGGAACCAGGACTGTAACCACTCTCTGAC-AAATGGAAG  228

seq1  CCATTTCTGCTCCTTCAACTATGGTTGCCATCAAAACCATACCTGATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTGCTCCTTCAACTATGGTTGCCATCAAAACCATACCTGATGCT  278

seq1  TCTATCAGCAAATGTCTAGATGCCAACACCATCTGTCCTCCCTCCCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCAGCAAATGTCTAGATGCCAACACCATCTGTCCTCCCTCCCAACA  328

seq1  GCCTCCAGCTTGATACTTCCAGAAATAGCATGGCAGCTGAGACTATCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAGCTTGATACTTCCAGAAATAGCATGGCAGCTGAGACTATCTCA  378

seq1  ACTACCAAAGACAACACTGCTCCAACTGAGGCATAAAGCAATACCCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCAAAGACAACACTGCTCCAACTGAGGCATAAAGCAATACCCCATA  428

seq1  TGCTTCATATAACATCACTCCAACTTCTGTAGAAAGTACAAGTCACAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATATAACATCACTCCAACTTCTGTAGAAAGTACAAGTCACAATA  478

seq1  TCCCAAAGACTACACAAATTGGGAGATACAGAGCTAAGACTAATGATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAGACTACACAAATTGGGAGATACAGAGCTAAGACTAATGATAAG  528

seq1  GGCACGTTTCCCAGGTGAGAGATAGTAGCGCCCAGCAATAAAACCAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGTTTCCCAGGTGAGAGATAGTAGCGCCCAGCAATAAAACCAAAAA  578

seq1  GGCAAGTTGAAAATGAAAAAAAAAAAAAGAAAAAGAAAAGAAAATGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTTGAAAATGAAAAAAAAAAAAAGAAAAAGAAAAGAAAATGAAAA  628

seq1  AGAAACTCATTCCCACAGAAAACATTGTCTTTCCTCTGGCACTTACATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTCATTCCCACAGAAAACATTGTCTTTCCTCTGGCACTTACATTC  678

seq1  TTTCATCTCCATCTTCTGCAGTGATCCCTGAGTCTTAGGTATAGAGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTCCATCTTCTGCAGTGATCCCTGAGTCTTAGGTATAGAGCTTT  728

seq1  GCTACTTAGGTTTCAGATGTGAGTGGGCAACACAAGACTCTTGCTCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTTAGGTTTCAGATGTGAGTGGGCAACACAAGACTCTTGCTCTCTG  778

seq1  CACTGTGATCTAGATTGTTTTTCTGTAATGTTCTCCATCAGCTAAAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGATCTAGATTGTTTTTCTGTAATGTTCTCCATCAGCTAAAAAAT  828

seq1  GAAATGGTTTTTGAGGATTTAGAACTTCACTGACTTTGTGTAGATGAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGTTTTTGAGGATTTAGAACTTCACTGACTTTGTGTAGATGAATA  878

seq1  AATATTAAGCATGTAGTTTGGAATTACTGTGGCTTACTAATGTGATGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAGCATGTAGTTTGGAATTACTGTGGCTTACTAATGTGATGGTT  928

seq1  ATATGTTCTCCTAAAAAATCCTGAATTC  978
      ||||||||||||||||||||||||||||
seq2  ATATGTTCTCCTAAAAAATCCTGAATTC  956