BAC Information

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BAC

Clone NameB6Ng01-036M04
Chromosome5 (Build37)
Map Location 124,681,954 - 124,713,037
singlet/doubletdoublet
Overlap geneMphosph9
Upstream genePsmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2
Downstream gene2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036M04.bB6Ng01-036M04.g
ACCDH864832DH864833
length1,134661
definitionDH864832|Mus musculus domesticus DNA, BAC clone: B6Ng01-036M04, 5' end.DH864833|Mus musculus domesticus DNA, BAC clone: B6Ng01-036M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,681,954 - 124,683,101)(124,712,349 - 124,713,037)
sequence
gaattctgggagttggaggccacccgacttttggcacttagttatgatgc
cccgagatgctcacagaaagacacaagagaatctagccactatagtttgc
ccttcagggtctctaagagacagagaaagtctggttccatgtggtggccc
ttccctgccatgatcaatggtcccctctctgctgccagtcttgtcttcct
gtacctgaggtcctaatgagaaaggctcacttgactgtgaccccttccag
ctggggactctctcccttgctcctttaagcctcaggccaagcaaaagtgt
gagagaacccaaaggttctgagggagcacgagagccactaagggtctccc
agcaggtctgcagcaaggctccccaggctgtctacatcacccacatccag
tgtccccgccagcatcctgtgccccccagcagtgctatcttccacccact
ctgcagctggggaccctggcaggggccgtgggcagctggcatctgctctt
tgaaaaggtatttatctttccacttgtggagagcaaacgagtgccataaa
aggacatgcccgatgtcaggtgcagaagcgctccacggagacagatgttg
ttcacacgggcatgaggctgctaactgccagggctgccctttgcagaaga
tcctggggcccccgctgtgcaggaggtctcaggcaggccacagatgtgaa
cactgtccccatgcctgtgtcaacagtgaggcatcacgtagcccacgagc
accaggggttctaaggacattctgcttccaagccccttgagcttcagttt
ctgtttgttttcttttctccttaccatttcatcattttgagtttacagtt
ccagcagccttttattgcaaacattaggctgtgcggccacggctgctatt
gtcgaactatttcacatccaccaaaaagttccagcttcctccaactgacc
ttgcttactacagcctaacttccacctctagtgaggggctcacagtgcat
ggtcttgcatgcttgtttctttactaaacaggttctttcaagctccgtct
gtgtagtgtgctagcactccattccttctatgctgcatgctccacgtcag
cagaccatgttctggtaatctggggctgagccta
gaattctcggcaaactgagccttcagtcaatacaggccgttccccagaga
aatgtgcccagcagagaccgaagagacagacttcggcttcacaaaggtcg
tcgtctctcccaccgtccagtcggaaagccaacactccaagtaagagatg
tgtgtgccttggactaaggagagtgacttcctgtgtatgccgagcatggg
cggggtccctgaaggcgcatagatactacaaacatcacctaagaaacctc
attatatgccaggcctgtagtagaggtctgtcatcccagctacctgggag
gctaaggattaaggttcaaggcctgcctgagctaccaagtgagttcaagg
ctagcaagccctgtcttaaaaatacaatgttagaagggtttgggatatag
ctcagtggtggagccctggcctagcgtggatgggggtccttagtatcgta
gaaaaaaattggttcagaaaagccaaagcttttgagaatttggatcactc
atggtgggaatacttattgaacagttacggaggtcagagaagattccttt
gcactctgcctgtgcttgggtctgtagcttttcttccaggttccactccc
ctaaacttaacattgccttcggtctcgtgctacttcccacccgctcagga
atctatctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_124681954_124683101
seq2: B6Ng01-036M04.b_44_1177

seq1  GAATTCTGGGAGTTGGAGGCCACCCGACTTTTGGCACTTAGTTATGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGTTGGAGGCCACCCGACTTTTGGCACTTAGTTATGATGC  50

seq1  CCCGAGATGCTCACAGAAAGACACAAGAGAATCTAGCCACTATAGTTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAGATGCTCACAGAAAGACACAAGAGAATCTAGCCACTATAGTTTGC  100

seq1  CCTTCAGGGTCTCTAAGAGACAGAGAAAGTCTGGTTCCATGTGGTGGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGGTCTCTAAGAGACAGAGAAAGTCTGGTTCCATGTGGTGGCCC  150

seq1  TTCCCTGCCATGATCAATGGTCCCCTCTCTGCTGCCAGTCTTGTCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGCCATGATCAATGGTCCCCTCTCTGCTGCCAGTCTTGTCTTCCT  200

seq1  GTACCTGAGGTCCTAATGAGAAAGGCTCACTTGACTGTGACCCCTTCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGAGGTCCTAATGAGAAAGGCTCACTTGACTGTGACCCCTTCCAG  250

seq1  CTGGGGACTCTCTCCCTTGCTCCTTTAAGCCTCAGGCCAAGCAAAAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACTCTCTCCCTTGCTCCTTTAAGCCTCAGGCCAAGCAAAAGTGT  300

seq1  GAGAGAACCCAAAGGTTCTGAGGGAGCACGAGAGCCACTAAGGGTCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAACCCAAAGGTTCTGAGGGAGCACGAGAGCCACTAAGGGTCTCCC  350

seq1  AGCAGGTCTGCAGCAAGGCTCCCCAGGCTGTCTACATCACCCACATCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTCTGCAGCAAGGCTCCCCAGGCTGTCTACATCACCCACATCCAG  400

seq1  TGTCCCCGCCAGCATCCTGTGCCCCCCAGCAGTGCTATCTTCCACCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCGCCAGCATCCTGTGCCCCCCAGCAGTGCTATCTTCCACCCACT  450

seq1  CTGCAGCTGGGGACCCTGGCAGGGGCCGTGGGCAGCTGGCATCTGCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCTGGGGACCCTGGCAGGGGCCGTGGGCAGCTGGCATCTGCTCTT  500

seq1  TGAAAAGGTATTTATCTTTCCACTTGTGGAGAGCAAACGAGTGCCATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGTATTTATCTTTCCACTTGTGGAGAGCAAACGAGTGCCATAAA  550

seq1  AGGACATGCCCGATGTCAGGTGCAGAAGCGCTCCACGGAGACAGATGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGCCCGATGTCAGGTGCAGAAGCGCTCCACGGAGACAGATGTTG  600

seq1  TTCACACGGGCATGAGGCTGCTAACTGCCAGGGCTGCCC-TTGCAGAAGA  649
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCACACGGGCATGAGGCTGCTAACTGCCAGGGCTGCCCTTTGCAGAAGA  650

seq1  TCCTGGGGCCCCCGCTGTGCAGGAGGTCTCAGGCAGGCCACAGATGTGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGCCCCCGCTGTGCAGGAGGTCTCAGGCAGGCCACAGATGTGAA  700

seq1  CACTGTCCCCATGCCTGTGTCAACAGTGAGGCATCACGTAGCCCACGAGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCCCATGCCTGTGTCAACAGTGAGGCATCACGTAGCCCACGAGC  750

seq1  ACCAGGGGTTCTAAGGACA-TCTGC-TCCAAGCCCC-TGAGCTTCAGGTT  796
      ||||||||||||||||||| ||||| |||||||||| ||||||||| |||
seq2  ACCAGGGGTTCTAAGGACATTCTGCTTCCAAGCCCCTTGAGCTTCA-GTT  799

seq1  TCTGTTTGTTTTC-TTTCT-CTTACCATTTCATCATTTTGAGTTTACAG-  843
      ||||||||||||| ||||| ||||||||||||||||||||||||||||| 
seq2  TCTGTTTGTTTTCTTTTCTCCTTACCATTTCATCATTTTGAGTTTACAGT  849

seq1  TCCAGCAGCC-TTTAGTGCAAACATAAGGCTGTGCGGCCACGGCTGCTAT  892
      |||||||||| |||| ||||||||| ||||||||||||||||||||||||
seq2  TCCAGCAGCCTTTTATTGCAAACATTAGGCTGTGCGGCCACGGCTGCTAT  899

seq1  TGTCGAAC-ATTTCACCATCCACCAAAACAGTTCCCAGCTTCCCTCCACA  941
      |||||||| |||||| |||||||||||| |||| ||||||| |||||| |
seq2  TGTCGAACTATTTCA-CATCCACCAAAA-AGTT-CCAGCTT-CCTCCA-A  944

seq1  CTGACCCCTGCTAACTACCAGCCTAACTTCCACCTCTAGTGTAGGGGCTC  991
      |||| || |||| |||| ||||||||||||||||||||||| ||||||||
seq2  CTGA-CCTTGCTTACTA-CAGCCTAACTTCCACCTCTAGTG-AGGGGCTC  991

seq1  ACAGTGCATGGGTCTTGCATGCTTGTCTTCTTTCACTAAACAGGTCCTTT  1041
      ||||||||| |||||||||||||||| |||||| ||||||||||| ||||
seq2  ACAGTGCAT-GGTCTTGCATGCTTGT-TTCTTT-ACTAAACAGGTTCTTT  1038

seq1  CAAAGCTCCGCCCCTGTGTAGTGTGCTAGCACTCCATTCCTCCCTATGGC  1091
      | ||||||||   ||||||||||||||||||||||||||||  |||| ||
seq2  C-AAGCTCCG--TCTGTGTAGTGTGCTAGCACTCCATTCCT-TCTAT-GC  1083

seq1  TGCATGCTCCACCGCACGCAGGGACCATGTTCTGTTTATCTGGCGCTGGA  1141
      ||||||||||||  || |||  |||||||||||| | |||||| ||||  
seq2  TGCATGCTCCACGTCA-GCA--GACCATGTTCTGGTAATCTGGGGCTG--  1128

seq1  AAGCCTA  1148
       ||||||
seq2  -AGCCTA  1134

seq1: chr5_124712349_124713037
seq2: B6Ng01-036M04.g_65_725 (reverse)

seq1  GAAAGATAGACTTCCCTGAGCGGGTGGGAATGTAGACACTGAGGACCCGA  50
      ||||||||||  | |||||||||||||||| |||| ||| || ||||   
seq2  GAAAGATAGA--TTCCTGAGCGGGTGGGAA-GTAG-CAC-GA-GACC--G  42

seq1  AAGGCAATGCTTAAGCTCTAGGGTGAGTGGGAACCCTGGGAAGGAAAAGC  100
      ||||||||| ||||| | ||||| ||||||  | |||||  | |||||||
seq2  AAGGCAATG-TTAAG-TTTAGGG-GAGTGG--AACCTGG--AAGAAAAGC  85

seq1  TACAGACACCAAGCACAGGGCAGAGATGCAAAAGGAATCTTCTCTGACCT  150
      ||||||| ||||||||| ||||||| ||| ||||||||||||||||||||
seq2  TACAGAC-CCAAGCACA-GGCAGAG-TGC-AAAGGAATCTTCTCTGACCT  131

seq1  CCGTAACTGTCTCAATAAGTATTTCACAGCCATTGACGTGATCCAAACTC  200
      |||||||||| |||||||||| ||| || ||| ||| |||||||||| ||
seq2  CCGTAACTGT-TCAATAAGTA-TTCCCA-CCA-TGA-GTGATCCAAATTC  176

seq1  TCAAAAGCTTTTGGCTTTTCTGAACCAACTTCTTTTTCTTACGATACTAA  250
      |||||||| |||||||||||||||||||  | |||||| |||||||||||
seq2  TCAAAAGC-TTTGGCTTTTCTGAACCAA--TTTTTTTC-TACGATACTAA  222

seq1  GGACCCCCATCCACGCTAGGCCAGGGCTCCACCACTGAGCTATATCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCCATCCACGCTAGGCCAGGGCTCCACCACTGAGCTATATCCCAA  272

seq1  ACCCTTCTAACATTGTATTTTTAAGACAGGGCTTGCTAGCCTTGAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCTAACATTGTATTTTTAAGACAGGGCTTGCTAGCCTTGAACTCA  322

seq1  CTTGGTAGCTCAGGCAGGCCTTGAACCTTAATCCTTAGCCTCCCAGGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAGCTCAGGCAGGCCTTGAACCTTAATCCTTAGCCTCCCAGGTAG  372

seq1  CTGGGATGACAGACCTCTACTACAGGCCTGGCATATAATGAGGTTTCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGACAGACCTCTACTACAGGCCTGGCATATAATGAGGTTTCTTA  422

seq1  GGTGATGTTTGTAGTATCTATGCGCCTTCAGGGACCCCGCCCATGCTCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGTTTGTAGTATCTATGCGCCTTCAGGGACCCCGCCCATGCTCGG  472

seq1  CATACACAGGAAGTCACTCTCCTTAGTCCAAGGCACACACATCTCTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACAGGAAGTCACTCTCCTTAGTCCAAGGCACACACATCTCTTACT  522

seq1  TGGAGTGTTGGCTTTCCGACTGGACGGTGGGAGAGACGACGACCTTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTTGGCTTTCCGACTGGACGGTGGGAGAGACGACGACCTTTGTG  572

seq1  AAGCCGAAGTCTGTCTCTTCGGTCTCTGCTGGGCACATTTCTCTGGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGAAGTCTGTCTCTTCGGTCTCTGCTGGGCACATTTCTCTGGGGAA  622

seq1  CGGCCTGTATTGACTGAAGGCTCAGTTTGCCGAGAATTC  689
      |||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTGTATTGACTGAAGGCTCAGTTTGCCGAGAATTC  661