BAC Information

Click to search

BAC

Clone NameB6Ng01-036P03
Chromosome5 (Build37)
Map Location 77,264,350 - 77,377,107
singlet/doubletdoublet
Overlap geneC530008M17Rik, A230062G08Rik, Ppat, LOC664998
Upstream geneKdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299
Downstream genePaics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2, Rest, 2610024G14Rik, Polr2b, Igfbp7, Pea15b, LOC669227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036P03.bB6Ng01-036P03.g
ACCDH864966DH864967
length903989
definitionDH864966|Mus musculus domesticus DNA, BAC clone: B6Ng01-036P03, 5' end.DH864967|Mus musculus domesticus DNA, BAC clone: B6Ng01-036P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,376,198 - 77,377,107)(77,264,350 - 77,265,351)
sequence
atgctctctctctctccctccctcaccactacacttgacctttacggtga
ggccacacacactgaggttctcaccagaagctgggctgaagggacttccc
ccaaacatgaattttcagcctcccagactgaccaaaataaccttttaaaa
gagaaaaggtacctaggctgggcatggtgatgatgcacaccactgatccc
agcgctcgggaggcagaggcaggtgaatgtcttgaatggaggtccatttg
gtctgcagggcaagttccaggccagccagccagccagagaaacgctgtct
cagaaacagaaagaaaaccaaaaccaaagaaagtacaaagtgcctagctt
ctcttgtattttgttacagtaagggaaagaagatgatagatttgttgtta
attaggaaatgagcatgtcctctgtcggtgagtggtcccgttcagaaaca
gaaattaaagccaatggctaatgctacatatttttatacttctcaacacg
tgtgaaactgacctggtggaggtgagggtcctgatggaagaaacatcctg
tagaaccttccagtttctgttaagctttgaggataccagtttgcagtggt
ctcagagatgttttcttgacaggtgtagaccttgtttctgtaaggaaaca
ccaccaggaaagcactcagtatggaggggtgcacccagacagcctccaag
gcaagcatccaaggcctcttcctgatgtgtgaggaacgcagtgcaatagg
aagttgaacttttggggtgccaagattaaggctgtggtgttataagccgc
taaaccaccagcttatcttgggcagccctcgtaacgtctgaatctgtttg
aattcttttaagctacaggtaagactgttggtgtactaagcagtagcaat
ctc
gaattctgctgggaaattgggatctataaagaagtaagtaaatgaacgat
gactttagattttttttaaatctgaaattaagaagttcaacaaaagtttt
atttgttatatttgtattatcaaacaaggccaaagagaatgagccagggc
ataggtcagcagggagatctagacccaagtcttagcagatatagatttcc
tgtatgcagcagctcgtctgggttcatttagcttgagtaaaaaagaatca
cagatacagaaaaaaaggaataaaagacaaatggctcatgttgaaagtac
ccatcaaagagttaagagaggaaaactgtggagagataacctaagaaaga
agggctgagagattctccaaaagtgagcaaagagacatcaagccacgggt
ttaagaagcgctgcagcgctccagactggagaagaggtcatgcctgctca
caccatagtaacactgccgagaagcaaatgaggtacaaagttttcagctt
ctgaaagtaaaactcagatgatttttttttttcctctcaatgaaacagac
attgaggaatatccatcagaatttctggccagtaaagttaaaatcatgac
gtgtttttctctctgggtctggagagtcacaagaacaaccatcaccactt
tctgactttcctccactaaagaatttagggctttgcctctcattatgggg
agggaaaggcaaaggggtaggtacatgaaaaggcaaaagagattggtact
gaaagtgtaaagtaaaggtgtgtggggatacgcctaattgtattttggat
ggaaatacaaagactgggcatcccactccttatcttattaaaaaaagaaa
aacttgcaaagtctcttttttatagaatcattatggttaaaatatttctt
ctctattccaccgcagagagacgaagataaagatttttattcattcgtga
aaaaatcaacccacagtattaggattaatctatcatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_77376198_77377107
seq2: B6Ng01-036P03.b_56_958 (reverse)

seq1  GAGATTGCTACTGGCTTAGTACA-CAACAGTACTTACCTGTAGCCTAAAA  49
      |||||||||||| |||||||||| ||||||| |||||||||||| |||||
seq2  GAGATTGCTACT-GCTTAGTACACCAACAGT-CTTACCTGTAGCTTAAAA  48

seq1  GATATCAAAACAGATCCAGACGTTTACGAGGGCTG-CCAAGACTAAGCTG  98
      || ||  |||||||| |||||| |||||||||||| |||||| |||||||
seq2  GA-ATTCAAACAGATTCAGACG-TTACGAGGGCTGCCCAAGA-TAAGCTG  95

seq1  GTGTTTTAGCGGCCTTGTTAACACCAACAGCCTTAATCTTGGCACCCCAA  148
      ||| |||||||||  |  ||||||| ||||||||||||||||||||||||
seq2  GTGGTTTAGCGGC--TTATAACACC-ACAGCCTTAATCTTGGCACCCCAA  142

seq1  AAGTTCAACTTCCTATTGCACTGCGTTCCTCAACACTTCAGGAAGAGGCC  198
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  AAGTTCAACTTCCTATTGCACTGCGTTCCTC-ACACATCAGGAAGAGGCC  191

seq1  TTGGATGCTTGCCTTGGAGGCTGTCTGGGTGCACCCCTCCCTACTGAGTG  248
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTGGATGCTTGCCTTGGAGGCTGTCTGGGTGCACCCCTCCATACTGAGTG  241

seq1  CTTTCCTGGTGGTGTTTCCTTACAGAAACAAGGTCTACACCTGTCAAGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGGTGGTGTTTCCTTACAGAAACAAGGTCTACACCTGTCAAGAA  291

seq1  AACATCTCCTGAGACCACTGCAAACTGGTTTCCTCAAAGCTTAACAG-AA  347
      ||||||| ||||||||||||||||||||| ||||||||||||||||| ||
seq2  AACATCT-CTGAGACCACTGCAAACTGGTATCCTCAAAGCTTAACAGAAA  340

seq1  CTGGAAGGTTCTACAGGATGTTTCTTCCATCAGGACCCTCACCTCCACCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGTTCTACAGGATGTTTCTTCCATCAGGACCCTCACCTCCACCA  390

seq1  GGTCAGTTTCACACGTGTTGAGAAGTATAAAAATATGTAGCATTAGCCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTTTCACACGTGTTGAGAAGTATAAAAATATGTAGCATTAGCCAT  440

seq1  TGGCTTTAATTTCTGTTTCTGAACGGGACCACTCACCGACAGAGGACATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTAATTTCTGTTTCTGAACGGGACCACTCACCGACAGAGGACATG  490

seq1  CTCATTTCCTAATTAACAACAAATCTATCATCTTCTTTCCCTTACTGTAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCCTAATTAACAACAAATCTATCATCTTCTTTCCCTTACTGTAA  540

seq1  CAAAATACAAGAGAAGCTAGGCACTTTGTACTTTCTTTGGTTTTGGTTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATACAAGAGAAGCTAGGCACTTTGTACTTTCTTTGGTTTTGGTTTT  590

seq1  CTTTCTGTTTCTGAGACAGCGTTTCTCTGGCTGGCTGGCTGGCCTGGAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTTTCTGAGACAGCGTTTCTCTGGCTGGCTGGCTGGCCTGGAAC  640

seq1  TTGCCCTGCAGACCAAATGGACCTCCATTCAAGACATTCACCTGCCTCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTGCAGACCAAATGGACCTCCATTCAAGACATTCACCTGCCTCTG  690

seq1  CCTCCCGAGCGCTGGGATCAGTGGTGTGCATCATCACCATGCCCAGCCTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCGAGCGCTGGGATCAGTGGTGTGCATCATCACCATGCCCAGCCTA  740

seq1  GGTACCTTTTCTCTTTTAAAAGGTTATTTTGGTCAGTCTGGGAGGCTGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTTTTCTCTTTTAAAAGGTTATTTTGGTCAGTCTGGGAGGCTGAA  790

seq1  AATTCATGTTTGGGGGAAGTCCCTTCAGCCCAGCTTCTGGTGAGAACCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGTTTGGGGGAAGTCCCTTCAGCCCAGCTTCTGGTGAGAACCTC  840

seq1  AGTGTGTGTGGCCTCACCGTAAAGGTCAAGTGTAGTGGTGAGGGAGGGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGTGGCCTCACCGTAAAGGTCAAGTGTAGTGGTGAGGGAGGGAG  890

seq1  AGAGAGAGAGCAT  910
      |||||||||||||
seq2  AGAGAGAGAGCAT  903

seq1: chr5_77264350_77265351
seq2: B6Ng01-036P03.g_70_1058

seq1  GAATTCTGCTGGGAAATTGGGATCTATAAAGAAGTAAGTAAATGAACGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGGGAAATTGGGATCTATAAAGAAGTAAGTAAATGAACGAT  50

seq1  GACTTTAGATTTTTTTTAAATCTGAAATTAAGAAGTTCAACAAAAGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAGATTTTTTTTAAATCTGAAATTAAGAAGTTCAACAAAAGTTTT  100

seq1  ATTTGTTATATTTGTATTATCAAACAAGGCCAAAGAGAATGAGCCAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTATATTTGTATTATCAAACAAGGCCAAAGAGAATGAGCCAGGGC  150

seq1  ATAGGTCAGCAGGGAGATCTAGACCCAAGTCTTAGCAGATATAGATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCAGCAGGGAGATCTAGACCCAAGTCTTAGCAGATATAGATTTCC  200

seq1  TGTATGCAGCAGCTCGTCTGGGTTCATTTAGCTTGAGTAAAAAAGAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCAGCAGCTCGTCTGGGTTCATTTAGCTTGAGTAAAAAAGAATCA  250

seq1  CAGATACAGAAAAAAAGGAATAAAAGACAAATGGCTCATGTTGAAAGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACAGAAAAAAAGGAATAAAAGACAAATGGCTCATGTTGAAAGTAC  300

seq1  CCATCAAAGAGTTAAGAGAGGAAAACTGTGGAGAGATAACCTAAGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAAGAGTTAAGAGAGGAAAACTGTGGAGAGATAACCTAAGAAAGA  350

seq1  AGGGCTGAGAGATTCTCCAAAAGTGAGCAAAGAGACATCAAGCCACGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGAGAGATTCTCCAAAAGTGAGCAAAGAGACATCAAGCCACGGGT  400

seq1  TTAAGAAGCGCTGCAGCGCTCCAGACTGGAGAAGAGGTCATGCCTGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGCGCTGCAGCGCTCCAGACTGGAGAAGAGGTCATGCCTGCTCA  450

seq1  CACCATAGTAACACTGCCGAGAAGCAAATGAGGTACAAAGTTTTCAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATAGTAACACTGCCGAGAAGCAAATGAGGTACAAAGTTTTCAGCTT  500

seq1  CTGAAAGTAAAACTCAGATGA-TTTTTTTTTTCCTCTCAATGAAACAGAC  549
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGAAAGTAAAACTCAGATGATTTTTTTTTTTCCTCTCAATGAAACAGAC  550

seq1  ATTGAGGAATATCCATCAGAA-TTCTGGCCAGTAAAGTTAAAATCATGAC  598
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTGAGGAATATCCATCAGAATTTCTGGCCAGTAAAGTTAAAATCATGAC  600

seq1  GTGTTTTTCTCTCTGGGTCTGGAGAGTCACAAGACCAACCATCACCAC-T  647
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  GTGTTTTTCTCTCTGGGTCTGGAGAGTCACAAGAACAACCATCACCACTT  650

seq1  TCTGACTTTCGTCCACTAAAGAATTTAGGGCTTTGCCTCTCAGTATGGGG  697
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TCTGACTTTCCTCCACTAAAGAATTTAGGGCTTTGCCTCTCATTATGGGG  700

seq1  AGGGAAAGGCAAAGGTGTAGGTACATGAAAAGGCAAAAGAGATATGGTAC  747
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  AGGGAAAGGCAAAGGGGTAGGTACATGAAAAGGCAAAAGAGAT-TGGTAC  749

seq1  TGAAGAGTGTAAGGTAAAGGTGTGT-GGGATACAGCCTAATTGTATTTTG  796
      |||| ||||||| |||||||||||| ||||||| ||||||||||||||||
seq2  TGAA-AGTGTAAAGTAAAGGTGTGTGGGGATAC-GCCTAATTGTATTTTG  797

seq1  GATAGGAAATACAAAGACTGGCCATCACACT-CTTATCATTATTAAAAAA  845
      ||| ||||||||||||||||| |||| |||| |||||| |||||||||||
seq2  GAT-GGAAATACAAAGACTGGGCATCCCACTCCTTATC-TTATTAAAAAA  845

seq1  AGAAAAAACTAGCAAAGTCTC-TTTTTATAAGATCATTATGTTAAAAATA  894
      || ||||||| |||||||||| ||||||||  ||||||||| | ||||| 
seq2  AG-AAAAACTTGCAAAGTCTCTTTTTTATAGAATCATTATGGTTAAAAT-  893

seq1  ATTTCATCTCATATTCCACCAGCAAGAGAACAGAAGATAAAGATTTTTAA  944
      ||||| |||| ||||||||| || |||||   ||||||||||||||||| 
seq2  ATTTCTTCTC-TATTCCACC-GC-AGAGAGACGAAGATAAAGATTTTTAT  940

seq1  TACCATTCGTGAAAAAAAATCAAACCCACCAGGTATATAGGAATAAATCT  994
      |  ||||||||  |||||||| |||||||   |||| |||| || |||||
seq2  T--CATTCGTG--AAAAAATC-AACCCAC--AGTAT-TAGG-ATTAATCT  981

seq1  ATCATGAT  1002
      ||||||||
seq2  ATCATGAT  989