BAC Information

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BAC

Clone NameB6Ng01-036P19
Chromosome5 (Build37)9 (Build37)
Map Location 18,084,511 - 18,084,5778,219,947 - 8,220,571
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036P19.bB6Ng01-036P19.g
ACCDH864996DH864997
length954645
definitionDH864996|Mus musculus domesticus DNA, BAC clone: B6Ng01-036P19, 5' end.DH864997|Mus musculus domesticus DNA, BAC clone: B6Ng01-036P19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,577)(8,219,947 - 8,220,571)
sequence
gaattctcaactaaggaatactgaatggctgagaagcacctgaaaaaata
ttcaacatccttaatcatcagggaaatgcatgtcaaaaaaaaaaccctga
cattctacctcacaccaatcagaacggctaagatcaaaaattcaggtgac
agcagatgctggcaaggatgtggagaaacaggaacactcctctactactg
ttgggattgaaagcttgtactaccactctggaagtcagtctggaggttcc
tcagaaaattggacataatactaccggaagatccagcaatacctctcctg
ggcatatagccagaagaagttccaactggtaataaaaacatgctccacta
tgttcatagcagccttatttataatagccagaagcttggaagaacccaga
tgtccctcgacagaaaaatggatacagaaaatgtggtacgtttacacaat
ggagtactactcagctttttaaaacaatggatttatgaaattcttggaca
aatggatgtatctggaggatatcatccttagtgaggtaacccaatcacaa
aacgaagtcattagatatgcactcactgataagtggatattagcccagaa
acatagaacatccaagttactatttgcaaaacacaagaaaatcaagaaga
gggaagaccaatgggtggatacttcattcctccttagaatagggaacaaa
atacccatgaaaggagttacagagataaagtttggagctaagacaaaagg
atggactatccaaagactacccgacctggggatccatcccataatcagcc
accaaatgcagacactattgaatatgccagcaagattttactgaaaggac
cctgatatagctgtctcgtataaggctatgccagtgcctggcaacacaga
agtggatgctcacagtcatctatagatggagcacaggcccccatgagtag
ctaa
gaattcttaactaaaattatctggccctgtttattttgttttgttttgtt
ttgttttttgtttgtttgttttttttttggttgagactcttaatgactgt
ttagatggtttatttgatctttttttttgaggttctgtcttttatttatt
tatttttttgttggatatttttttcatttacatttcaaatgttaacccct
ttcctgcccccctgaaacctcctatcccatcctccctcccactgcttcta
tgagggtgttcatccacccacccacccactctcacctccccaccctctat
taccctacactggggcatctatcgagccttcataggaccaagaatctctc
ctcccattgatgcctgacaaagcccatcctctgctacatatgcagctgga
gccatgtgtactccttggttgatgggcttagtccctgggagctctggggg
gttctggtttggttgatattgttgttccttcctatggggttacaaaaccc
ctttcaactccttcagtccctttctttaaccccctctaattgggggaccc
ccacatttcatttccaaatggtttggctgcaagcatcccactttttttat
tttgtaagggtctggcagggcctctcagggaaaaaggccatataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084577
seq2: B6Ng01-036P19.b_363_427 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||| | 
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTTT-  49

seq1  CTTCTTACCAGTTGGAA  67
       || |||||||||||||
seq2  -TTATTACCAGTTGGAA  65

seq1: chr9_8219947_8220571
seq2: B6Ng01-036P19.g_68_712

seq1  GAATTCTTAACTAAAATTATCTGGCCCTGTTTATTTTGTTTTGTTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACTAAAATTATCTGGCCCTGTTTATTTTGTTTTGTTTTGTT  50

seq1  TTGTTTTTTGTTTGTTTGTTTTTTTTTTGGTTGAGACTCTTAATGACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTGTTTGTTTGTTTTTTTTTTGGTTGAGACTCTTAATGACTGT  100

seq1  TTAGATGGTTTATTTGATCTTTTTTTTTGAGGTTCTGTCTTTTATTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGGTTTATTTGATCTTTTTTTTTGAGGTTCTGTCTTTTATTTATT  150

seq1  TATTTTTTTGTTGGATATTTTTTTCATTTACATTTCAAATGTTAACCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTGTTGGATATTTTTTTCATTTACATTTCAAATGTTAACCCCT  200

seq1  TTCCTGCCCCCCTGAAACCTCCTATCCCATCCTCCCTCCCACTGCTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCCCCCTGAAACCTCCTATCCCATCCTCCCTCCCACTGCTTCTA  250

seq1  TGAGGGTGTTCATCCACCCACCCACCCACTCTCACCTCCCCACCCTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTGTTCATCCACCCACCCACCCACTCTCACCTCCCCACCCTCTAT  300

seq1  TACCCTACACTGGGGCATCTATCGAGCCTTCATAGGACCAAGAATCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTACACTGGGGCATCTATCGAGCCTTCATAGGACCAAGAATCTCTC  350

seq1  CTCCCATTGATGCCTGACAAAGCCCATCCTCTGCTACATATGCAGCTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTGATGCCTGACAAAGCCCATCCTCTGCTACATATGCAGCTGGA  400

seq1  GCCATGTGTACTCCTTGGTTGAT-GGCTTAGTCCCTGGGAGCTCT-GGGG  448
      ||||||||||||||||||||||| ||||||||||||||||||||| ||||
seq2  GCCATGTGTACTCCTTGGTTGATGGGCTTAGTCCCTGGGAGCTCTGGGGG  450

seq1  GTTCTGG-TTGGTTGATATTGTTGTT-CTTCCTATGGGGTTACAAA--CC  494
      ||||||| |||||||||||||||||| |||||||||||||||||||  ||
seq2  GTTCTGGTTTGGTTGATATTGTTGTTCCTTCCTATGGGGTTACAAAACCC  500

seq1  CCTTCAACTCCTTCAGT-CCTTTCTTTAA-CTCCTCT-ATTGGGG--ACC  539
      | ||||||||||||||| ||||||||||| | ||||| |||||||   ||
seq2  CTTTCAACTCCTTCAGTCCCTTTCTTTAACCCCCTCTAATTGGGGGACCC  550

seq1  CCACA-TTCATT--CCAATGG-TTGGCTGCAAGCAT-CCACTTCTGT--A  582
      ||||| ||||||  | ||||| |||||||||||||| |||||| | |   
seq2  CCACATTTCATTTCCAAATGGTTTGGCTGCAAGCATCCCACTTTTTTTAT  600

seq1  TTTGTAAGGCTCTGGCAGGGCCTCTCAGG--AGACAGCCATATCA  625
      ||||||||| |||||||||||||||||||  | |  ||||||| |
seq2  TTTGTAAGGGTCTGGCAGGGCCTCTCAGGGAAAAAGGCCATATAA  645