BAC Information

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BAC

Clone NameB6Ng01-037M05
Chromosome5 (Build37)
Map Location 14,960,919 - 14,961,494
singlet/doubletsinglet
Overlap geneSpeer8-ps1
Upstream geneSema3e, LOC100042957, Pclo, ENSMUSG00000033219, LOC624245
Downstream geneSpeer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037M05.g
ACCDH865528
length586
definitionDH865528|Mus musculus domesticus DNA, BAC clone: B6Ng01-037M05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ccattgttttttatttaaaaaacgactatgaaacattgtctacaaattct
tttatgtccaactatgcaaatacaacttcaagtactctggaaattcatga
tggtgctaacaatttcaggaatttccaacaggacgcataacaagaaaaat
ccatatagtacaagtcttaggtgttagctgaattttcaaatcagaaagca
aagagaagaatttacattttcagtaactttaggatctgtgagtgttgtta
atttaaataccgttatgaggagtccaggtacagcaggatattaggccatg
caattggataggaagatacagaagctatatagtacttcaagtgttgctat
catatatgtctaattgatattttacagattaatgccaagttaaatcaaaa
tatagtctcctacccattacatcttaaaacacaatgatctatcaacagtt
gccatttcacagcaaaaggaaagcagtaggtataaattgaacacataact
gcttctcttgtaagaaatgaacacagatatatatatacatgtatacttat
acattctctttgaaatcaagtgatttaatttgcttt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14960919_14961494
seq2: B6Ng01-037M05.g_9_586

seq1  TTTTATTAAAAAAGAGA----GAATCATTGTCTACAAATTCTTTTATGTC  46
      ||||||| |||||  ||    ||| |||||||||||||||||||||||||
seq2  TTTTATTTAAAAAACGACTATGAAACATTGTCTACAAATTCTTTTATGTC  50

seq1  CAACTATGCAAATACAACTTCAAGCACACTGGAAATTCTATGATGGTGCT  96
      |||||||||||||||||||||||| || |||||||||| |||||||||||
seq2  CAACTATGCAAATACAACTTCAAGTACTCTGGAAATTC-ATGATGGTGCT  99

seq1  AACAATTTCAGGAATTTCCAACAGGACGCATAACAAGAAAAATCCATATA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTCAGGAATTTCCAACAGGACGCATAACAAGAAAAATCCATATA  149

seq1  GTACAAGTCTTAGGTGTTAGCTGAATTTTCAAATCAAAAAGCAAAGAGAA  196
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTACAAGTCTTAGGTGTTAGCTGAATTTTCAAATCAGAAAGCAAAGAGAA  199

seq1  GAATTTACATTTTCAGTAACTTTAGGATCTGTGAGTGTTGTTAATTTAAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTACATTTTCAGTAACTTTAGGATCTGTGAGTGTTGTTAATTTAAA  249

seq1  TACCGTTATGAGGAGTCCAGGTACATCAGGATATTAGGCCATGCAATCGT  296
      ||||||||||||||||||||||||| ||||||||||||||||||||| | 
seq2  TACCGTTATGAGGAGTCCAGGTACAGCAGGATATTAGGCCATGCAATTGG  299

seq1  ATACGGAGATACAGAAGCTACATAGTACTTCAAGTGTTGCTATCATATAT  346
      ||| | |||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAGGAAGATACAGAAGCTATATAGTACTTCAAGTGTTGCTATCATATAT  349

seq1  GTCTAATTGATATTTTACAGATTAATGCCAAGTAAAATCAAAATATAGTC  396
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTCTAATTGATATTTTACAGATTAATGCCAAGTTAAATCAAAATATAGTC  399

seq1  TCCTACCCATTACATCTTAAAACACAATGATCTATCAACAGTTGCCATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCCATTACATCTTAAAACACAATGATCTATCAACAGTTGCCATTT  449

seq1  CACAGCAAAAGGAAAGCAGTAGGTATAAATTGAACACAGAACTGCTTCTC  496
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CACAGCAAAAGGAAAGCAGTAGGTATAAATTGAACACATAACTGCTTCTC  499

seq1  TTCTAAGAAATGAACACAGATATATAGATACATGTATACTTATACATTCT  546
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTGTAAGAAATGAACACAGATATATATATACATGTATACTTATACATTCT  549

seq1  CTTTGAAATTCAAGGTGA-TTAATTTGCTTT  576
      |||||||| |||| |||| ||||||||||||
seq2  CTTTGAAA-TCAA-GTGATTTAATTTGCTTT  578