BAC Information

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BAC

Clone NameB6Ng01-038A10
Chromosome5 (Build37)
Map Location 110,192,945 - 110,193,802
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671564, 1810008K16Rik, EG627479, EG435864, EG667087, LOC100041615, V2r16, LOC545792, EG384219, Vmn2r12, LOC231589, EG231591, LOC667128, EG211223, EG384220, EG636052, EG384221, LOC667159, LOC667171, Tpte2, EG667185, LOC671695, LOC636173, LOC624831, LOC100041734, LOC100042749, LOC667198
Downstream gene4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038A10.bB6Ng01-038A10.g
ACCDH865719DH865720
length1,1551,241
definitionDH865719|Mus musculus domesticus DNA, BAC clone: B6Ng01-038A10, 5' end.DH865720|Mus musculus domesticus DNA, BAC clone: B6Ng01-038A10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcattcctctgaggatgactgtgatatgcaaaggcttaacaa
catagagtatattcagagatttttctctccagtatgatttttcctgcctg
caaagataattggcacatgtgaaagctttgccacattcattacactgatg
aatctttttctctgtatgaattaattttacaattaggtttaatggtgaag
aggaatcacatcttaatgtttcatcactttgtttacattcatggtttccc
ctaaattttgggttgttttgtgtctttgaagatatctgtgatagtaaaag
aatttattacatggctcgcatttttgaaattttattttatttttaattca
ttttttacactctatattccattccctgccccctcatccaccctctgact
gctccacatcccacacctcctccacaccccaccccatctccacatgaata
cccacatcccccaccccacctgacctataaactccctggggccttaggtc
tcttgagggttaggtgcagcatctctgaatgaacacacacctggaagtcc
tctactgtatgtgtgttcgggacctcatatcagctggtgtgtgttgtctg
gtggttcagtgtttgaaagatctcaggggtccagattaattaaaaatgct
ggttctcctacaggattgcccttctcctcatcttctttcagccttcccta
attcaacaacaggggtcagctgcttctgaccattggttgggtgcaaatat
ctgcatctgactctttcagctgcttgttgggtctttcagaggacagttat
gataggtcccttttcatgagcattccatagtctcagtaatagtgtcaggc
cttgggacctccccttgagctggatcccactttgggcctgtcgcttaacc
ttctttcctcagctgatgcctttgatctcagcactcatgagcagcagcag
tgtccctcagcacatggattcgaggattgtctgctcatgattccaggaca
gtcagtactacattaaacctgactcagcatcatgatgtgtactgcacccc
accccacatacacctgcctcctaaagtctactcttgactgagaacacacc
atgacatactctcactcccattgctggacctacaagccatgctatgggct
ctgcc
gaattctttcatgtagttgaagtagaccatgaaaagcaaaggatttacta
cattgcttacattcattgtatttgtctctagtatgtgttattttatgcat
tttgagatgactgagttgtgcaaaggctttaccacattgattacatttgt
aaggtttctctccagtatgaattctttcatgtattcgaagttgattatga
gaagcaaaggatttactacattgcttacattcatagggtttctctccagt
atgtattctttcatgtctttgaagatcatattgacgtacaaaggctttac
cacattgactacatgtgaaaggtttctctccagaatgaattctttcatgt
tttcgaagttgagcaggagaagcaaaggatttactacattgattacattc
tttatgtttcactctagtatgtattctttcatgcctttgaagtgcatcgt
gacgtacaaaggctttcccacattgattacatttgtaaggtttctctcca
gtatgaattctttcatgtgttcggagttcactgtttcgggcaaaggcttt
accacattcattacatttataaggtttctctcccgtatgtattcttttat
gtacttggaaagaactttgatatgcaaaggctttgccacattgattacat
tcatagggcttctctccagtatgtgttcttttatgtactcgtaaagattt
agaataaacaaagcttttaccacactgattacatttgtaaggtttctctc
cagtatgtgttactttatgctttttaagatgactgtgttgtgcaaaggct
ttaccacattgatcacatttataaggtttctctccagtatgaattccttc
atgtttttgaaattgattgtgagaggcaaaggatttactacattgcttac
attcataggctttcgctccactatgtgttctttcatgtatttggagagta
tggtgtcctgcaaaggctttaccacattgactgcatttgtagcatttctc
cccagtgttgtgttattttctgcatttggaaactactgtgtgtagaagtt
tcacagtactgaatgcctcaaggttctctccagtagactctttagctgca
gtattgcagtgaagccttgccatcctatccttgagattttacgggataat
ttcaattggtctttgagagaacaccttaatttacttgtactctctagttc
cactcatctgtatgcgccgttgtaacgtagatcgtgcactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_110192945_110193802
seq2: B6Ng01-038A10.b_372_1203

seq1  TTGAAATTTTATTTTATTTTTAATTCATTTTTTACACTCTATATTCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTTTATTTTATTTTTAATTCATTTTTTACACTCTATATTCCATT  50

seq1  CCCTGCCCCCTCATCCACCCTCTGACTGCTCCACATCCCACACCTCCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCCCCTCATCCACCCTCTGACTGCTCCACATCCCACACCTCCTCC  100

seq1  ACACCCCACCCCATCTCCACATGAATACCCACATCCCCCACCCCACCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCACCCCATCTCCACATGAATACCCACATCCCCCACCCCACCTGA  150

seq1  CCTATAAACTCCCTGGGGCCTTAGGTCTCTTGAGGGTTAGGTGCAGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAACTCCCTGGGGCCTTAGGTCTCTTGAGGGTTAGGTGCAGCATC  200

seq1  TCTGAATGAACACACACCTGGAAGTCCTCTACTGTATGTGTGTTCGGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATGAACACACACCTGGAAGTCCTCTACTGTATGTGTGTTCGGGAC  250

seq1  CTCATATCAGCTGGTGTGTGTTGTCTGGTGGTTCAGTGTTTGAAAGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATCAGCTGGTGTGTGTTGTCTGGTGGTTCAGTGTTTGAAAGATCT  300

seq1  CAGGGGTCCAGATTAATTAAAAATGCTGGTTCTCCTACAGGATTGCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTCCAGATTAATTAAAAATGCTGGTTCTCCTACAGGATTGCCCTT  350

seq1  CTCCTCATCTTCTTTCAGCCTTCCCTAATTCAACAACAGGGGTCAGCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCATCTTCTTTCAGCCTTCCCTAATTCAACAACAGGGGTCAGCTGC  400

seq1  TTCTGACCATTGGTTGGGTGCAAATATCTGCATCTGACTCTTTCAGCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACCATTGGTTGGGTGCAAATATCTGCATCTGACTCTTTCAGCTGC  450

seq1  TTGTTGGGTCTTTCAGAGGACAGTTATGATAGGTCCCTTTTCATGAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGGTCTTTCAGAGGACAGTTATGATAGGTCCCTTTTCATGAGCAT  500

seq1  TCCATAGTCTCAGTAATAGTGTCAGGCCTTGGGACCTCCCCTTGAGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGTCTCAGTAATAGTGTCAGGCCTTGGGACCTCCCCTTGAGCTGG  550

seq1  ATCCCACTTTGGGCCTGTCGCTTAACCTTCTTTTCCTCAGGCTGATGCCT  600
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  ATCCCACTTTGGGCCTGTCGCTTAACCTTC-TTTCCTCA-GCTGATGCCT  598

seq1  TTGATCTCAGCACTCATGAGGCAGCAGCAGGTGTCCCTCAGCAACATGGA  650
      ||||||||||||||||||| ||||||||| |||||||||||| |||||||
seq2  TTGATCTCAGCACTCATGA-GCAGCAGCA-GTGTCCCTCAGC-ACATGGA  645

seq1  TTCGAGAATTGTCTGCTCAATGAATTCCAGGACAGTCAGTACATACATTA  700
      |||||| ||||||||||| ||| ||||||||||||||||||| |||||| 
seq2  TTCGAGGATTGTCTGCTC-ATG-ATTCCAGGACAGTCAGTAC-TACATT-  691

seq1  AAACCTGACTCAGCAGTCATGGATTGGTGTACTGCACCCCACCCCACAAT  750
      ||||||||||||||| |||| |||  ||||||||||||||||||||| ||
seq2  AAACCTGACTCAGCA-TCAT-GAT--GTGTACTGCACCCCACCCCAC-AT  736

seq1  ACCACCTGCCTCCTAAGAGGTCTACTCTGACCTGAGACACACA-CATGGC  799
      | |||||||||||||  | |||||||||   |||||| ||||| ||||  
seq2  A-CACCTGCCTCCTA--AAGTCTACTCTTGACTGAGA-ACACACCATG--  780

seq1  ACATACTCTCACCCCCATCTGCTGGAACCCTAACAAGCCCACTAGTCATG  849
      |||||||||||| ||||| |||||||  ||| ||||||   |  |  |||
seq2  ACATACTCTCACTCCCAT-TGCTGGA--CCT-ACAAGC---CATGCTATG  823

seq1  GGCTCTGCC  858
      |||||||||
seq2  GGCTCTGCC  832