BAC Information

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BAC

Clone NameB6Ng01-038E02
Chromosome5 (Build37)
Map Location 85,359,225 - 85,517,421
singlet/doubletdoublet
Overlap genenone
Upstream geneEpha5, LOC100039489
Downstream geneCenpc1, LOC100039521, AI586015
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038E02.bB6Ng01-038E02.g
ACCDH865869DH865870
length8911,006
definitionDH865869|Mus musculus domesticus DNA, BAC clone: B6Ng01-038E02, 5' end.DH865870|Mus musculus domesticus DNA, BAC clone: B6Ng01-038E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,516,532 - 85,517,421)(85,359,225 - 85,360,242)
sequence
gaattcacttggacaaccggatccttctacggcaaagcttttattgcttc
aacataacgaagactccaaacccggaaaatggcgctgcttatatagcctg
cagtgtgacgtttcagcacctgatgtggcgtgacagcacctgattagttg
ctcgcccatcaccccattactacgcccagagatgggcagtgattgggcat
gaatttactcttgcacttgtgcataaggcttgtttactagttaggcacag
tggaagccagcaccatcttataatggtgattgctcacggcacggctctcc
acatatatatttcatgggtttttataaatgcataagtttatataaatata
aaatataatgaaaaacaaagactttatgttggagaactgataaatacatt
tgagcctttcatagttaatatgcttttaccctgaattttaataacctcaa
tttaatacaataaatgaggaaaaaaatcttaaagtgtttacttacaaaaa
aatgtaattttctgctatagagaatggcactccatgataacagattacct
tgttaaatatgaaacctagaacttacaataaacaagtaccaaaaaagagc
ttttaaatagacgcttgcctggattcagattctgatgtgaaattttgaag
aatcattcatcaggtttctggctgtattcactagcatacttagttttgct
acagtggactttagaaactatcagtaggaatataactgattagtaaaatt
ctacaaatattttactattttcattcatctctaaccattaataggttata
tctttatattgatatttgtttctgtgtctgccatagatagatagatagat
agatagatagatagatagatagataggtagagatagattga
gaattccagttcatgatcccaccagcaatggaggagtgttcctctttctc
cacatcctcaccaacttgtgttgtcacctgaggtttcgatcttagccatt
cttattgtgtaaggtggaatctccagttgttttgatttgaatttctctga
tcactaagaactttgcacagttctttaggcacttctcagccatttaagat
tcctctgttgtgagttcttgctttagttctatctataccccatagtagtt
agcttcttgagttcctttttttttttacactgcactgatgaaatcattca
aaaactttattgacctataacctgattagatatgccagatgagaattaat
atcgtacagaaagttgtacagaaatttttacataaaaaactttacatctg
taccatatacatatccacctgaaacattttctagacccactgttatatgg
aatacttgataagcatttcattcaaaccatcagagcacagttcacagtat
gaatacatttccagtaaatctaacctccccaaaccatgccaggtttgtta
tttttaatatattcaacaataaattctgtacatagaataaaatctacacc
aagctctgccacccaaaagaaaaagtgacagcaacctagattcattttgc
agtgattcaagtttcagtctgtgaaaggtcatctattttaatggttcatc
tttaaaagccctaagagagtgagtatgtcaacagtagggagaaaccacca
aggtacaaaacatccctgctgacaagagcttcttgagttctttatatata
ttgtatattagccctttattgggtgtggggttagtgaagacttttttccc
aatctataggatgctgatttgtctattgactatgttcttttgctggtggg
attacaaattggtacaaccactctgggaaatcagtctggagttcctcaaa
atcagaacagatctactgagacccagcatacactctggaattaaaacaaa
tatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85516532_85517421
seq2: B6Ng01-038E02.b_32_922 (reverse)

seq1  TCTATCTATCTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA  50
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCAATCTATCTCTACCTATCTATCTATCTATCTATCTATCTATCTATCTA  50

seq1  TCTATCTATGGCAGACACAGAAACAAATATCAATATAAAGATATAACCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATGGCAGACACAGAAACAAATATCAATATAAAGATATAACCTA  100

seq1  TTAATGGTTAGAGATGAATGAAAATAGTAAAATATTTGTAGAATTTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGTTAGAGATGAATGAAAATAGTAAAATATTTGTAGAATTTTACT  150

seq1  AATCAGTTATATTCCTACTGATAGTTTCTAAAGTCCACTGTAGC-AAACT  199
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AATCAGTTATATTCCTACTGATAGTTTCTAAAGTCCACTGTAGCAAAACT  200

seq1  AAGTATGCTAGTGAATACAGCCAGAAACCTGATGAATGATTCTTCAAAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGCTAGTGAATACAGCCAGAAACCTGATGAATGATTCTTCAAAAT  250

seq1  TTCACATCAGAATCTGAATCCAGGCAAGCGTCTATTTAAAAGCTCTTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCAGAATCTGAATCCAGGCAAGCGTCTATTTAAAAGCTCTTTTT  300

seq1  TGGTACTTGTTTATTGTAAGTTCTAGGTTTCATATTTAACAAGGTAATCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTTGTTTATTGTAAGTTCTAGGTTTCATATTTAACAAGGTAATCT  350

seq1  GTTATCATGGAGTGCCATTCTCTATAGCAGAAAATTACATTTTTTTGTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCATGGAGTGCCATTCTCTATAGCAGAAAATTACATTTTTTTGTAA  400

seq1  GTAAACACTTTAAGATTTTTTTCCTCATTTATTGTATTAAATTGAGGTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACACTTTAAGATTTTTTTCCTCATTTATTGTATTAAATTGAGGTTA  450

seq1  TTAAAATTCAGGGTAAAAGCATATTAACTATGAAAGGCTCAAATGTATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTCAGGGTAAAAGCATATTAACTATGAAAGGCTCAAATGTATTT  500

seq1  ATCAGTTCTCCAACATAAAGTCTTTGTTTTTCATTATATTTTATATTTAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTCTCCAACATAAAGTCTTTGTTTTTCATTATATTTTATATTTAT  550

seq1  ATAAACTTATGCATTTATAAAAACCCATGAAATATATATGTGGAGAGCCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTTATGCATTTATAAAAACCCATGAAATATATATGTGGAGAGCCG  600

seq1  TGCCGTGAGCAATCACCATTATAAGATGGTGCTGGCTTCCACTGTGCCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTGAGCAATCACCATTATAAGATGGTGCTGGCTTCCACTGTGCCTA  650

seq1  ACTAGTAAACAAGCCTTATGCACAAGTGCAAGAGTAAATTCATGCCCAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTAAACAAGCCTTATGCACAAGTGCAAGAGTAAATTCATGCCCAAT  700

seq1  CACTGCCCATCTCTGGGCGTAGTAATGGGGTGATGGGCGAGCAACTAATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCCATCTCTGGGCGTAGTAATGGGGTGATGGGCGAGCAACTAATC  750

seq1  AGGTGCTGTCACGCCACATCAGGTGCTGAAACGTCACACTGCAGGCTATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTGTCACGCCACATCAGGTGCTGAAACGTCACACTGCAGGCTATA  800

seq1  TAAGCAGCGCCATTTTCCGGGTTTGGAGTCTTCGTTATGTTGAAGCAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGCGCCATTTTCCGGGTTTGGAGTCTTCGTTATGTTGAAGCAATA  850

seq1  AAAGCTTTGCCGTAGAAGGATCCGGTTGTCCAAGTGAATTC  890
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTGCCGTAGAAGGATCCGGTTGTCCAAGTGAATTC  891

seq1: chr5_85359225_85360242
seq2: B6Ng01-038E02.g_65_1070

seq1  GAATTCCAGTTCATGATCCCACCAGCAATGGAGGAGTGTTCCTCTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTCATGATCCCACCAGCAATGGAGGAGTGTTCCTCTTTCTC  50

seq1  CACATCCTCACCAACTTGTGTTGTCACCTGAGGTTTCGATCTTAGCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCTCACCAACTTGTGTTGTCACCTGAGGTTTCGATCTTAGCCATT  100

seq1  CTTATTGTGTAAGGTGGAATCTCCAGTTGTTTTGATTTGAATTTCTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGTGTAAGGTGGAATCTCCAGTTGTTTTGATTTGAATTTCTCTGA  150

seq1  TCACTAAGAACTTTGCACAGTTCTTTAGGCACTTCTCAGCCATTTAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAGAACTTTGCACAGTTCTTTAGGCACTTCTCAGCCATTTAAGAT  200

seq1  TCCTCTGTTGTGAGTTCTTGCTTTAGTTCTATCTATACCCCATAGTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTTGTGAGTTCTTGCTTTAGTTCTATCTATACCCCATAGTAGTT  250

seq1  AGCTTCTTGAGTTCCTTTTTTTTTTTACACTGCACTGATGAAATCATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTTGAGTTCCTTTTTTTTTTTACACTGCACTGATGAAATCATTCA  300

seq1  AAAACTTTATTGACCTATAACCTGATTAGATATGCCAGATGAGAATTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTATTGACCTATAACCTGATTAGATATGCCAGATGAGAATTAAT  350

seq1  ATCGTACAGAAAGTTGTACAGAAATTTTTACATAAAAAACTTTACATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTACAGAAAGTTGTACAGAAATTTTTACATAAAAAACTTTACATCTG  400

seq1  TACCATATACATATCCACCTGAAACATTTTCTAGACCCACTGTTATATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATATACATATCCACCTGAAACATTTTCTAGACCCACTGTTATATGG  450

seq1  AATACTTGATAAGCATTTCATTCAAACCATCAGAGCACAGTTCACAGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTGATAAGCATTTCATTCAAACCATCAGAGCACAGTTCACAGTAT  500

seq1  GAATACATTTCCAGTAAATCTAACCTCCCCAAACCATGCCAGGTTTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACATTTCCAGTAAATCTAACCTCCCCAAACCATGCCAGGTTTGTTA  550

seq1  TTTTTAATATATTCAACAATAAATTCTGTACATAGAATAAAATCTACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATATATTCAACAATAAATTCTGTACATAGAATAAAATCTACACC  600

seq1  AAGCTCTGCCACCCAAAAGAAAAAGTGACAGCAACCTAGATTCATTTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGCCACCCAAAAGAAAAAGTGACAGCAACCTAGATTCATTTTGC  650

seq1  AGTGATTCAAGTTTCAGTCTGTGAAAGGTCATCTATTTTAATGGTTCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTCAAGTTTCAGTCTGTGAAAGGTCATCTATTTTAATGGTTCATC  700

seq1  TTTAAAAGCCCTAAGAGAGTGAGTATGTCAACAGTAGGGAGAAACCACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGCCCTAAGAGAGTGAGTATGTCAACAGTAGGGAGAAACCACCA  750

seq1  AGGTACAAAACATCCCTGCTGACAAGAGCTTCTTGAGTTCTTTATATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAAAACATCCCTGCTGACAAGAGCTTCTTGAGTTCTTTATATATA  800

seq1  TTGTATATTAGCCCTTTATTGGGTGTGGGGTTAGTGAAGACTTTTTTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATTAGCCCTTTATTGGGTGTGGGGTTAGTGAAGACTTTTTTCCC  850

seq1  AATCTATAGGATGCTGATTTGTCTTATTGACTATGTTCTTTTGCTGGTGG  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATCTATAGGATGCTGATTTGTC-TATTGACTATGTTCTTTTGCTGGTGG  899

seq1  GATTACAAATTGGTACAACCACTCT-GGAAATCAGTCTGGAAGTTCCTCA  949
      ||||||||||||||||||||||||| |||||||||||||| |||||||| 
seq2  GATTACAAATTGGTACAACCACTCTGGGAAATCAGTCTGG-AGTTCCTC-  947

seq1  AAAAATCAGAAACAGATCTACCTGAAGACCCAGCAATACCACTCTTGGGA  999
       |||||||| |||||||||| ||| ||||||||| ||| ||||||  |||
seq2  -AAAATCAG-AACAGATCTA-CTG-AGACCCAGC-ATA-CACTCT--GGA  989

seq1  ATATAAAACAAAATATGCT  1018
      || |||||| |||||||||
seq2  AT-TAAAAC-AAATATGCT  1006