BAC Information

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BAC

Clone NameB6Ng01-038F14
Chromosome5 (Build37)
Map Location 56,409,796 - 56,558,163
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335, LOC100041349
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038F14.bB6Ng01-038F14.g
ACCDH865935DH865936
length1,128150
definitionDH865935|Mus musculus domesticus DNA, BAC clone: B6Ng01-038F14, 5' end.DH865936|Mus musculus domesticus DNA, BAC clone: B6Ng01-038F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,409,796 - 56,410,940)(56,558,014 - 56,558,163)
sequence
gaattcattgatttattttcaaagccagactacttattaaataattggca
aatgtgtgattcctctatgatattgttagtaaatgaagaatgagtggaat
ccagaaaagataagcagagagaactgatgtgtaagttacagaagtggagg
cagatcttaccattcatttagagatgtgatcatgtgaggcaagaatcatg
ggaaaagtagccatccaagaaaaaaggatcaggttaccaaagatcattcc
agctcacgtaaggatacttttgtgttggaagtgttaagaacactggcttc
tcttccataggcttcttcaattcctagcacacacatggaagctcataact
gtccttcactccagttctcagagatctgacaccctcatgattaacattaa
ataaagagttttgaaaaaaagatacaaatatattcatcagaaaactgaag
atagccaaggtacgtatcagttatcagtcacttttctatgcaccacacct
atattaagctctaatgcatagttagcatttttattttatgcttcaaataa
aagaaatgaaacagtgatattcatgagacccacataaatagatcagtcag
ggctaaacactggaatcactggtatgtgacacaggatggacttcaactag
agtcatttgtattgcaattctgcattcgttgctatctagaaaaggcatct
atttaattgtaagtatagtccattacagagatgtgtctcagttaacttta
ttgcatcataaatcactcgagagtttagtggcttaaaacaaaacagaatt
tttttgcagctaagcagttgacaaatcagatctatgtatgtgattttggc
tgggattttttggaagttcttcaatggtcttactcatgtatagagatgtt
gtagaatgaaatatctgctagggcatttggcctagagacttggaagcctg
catgtgactgttagggtctcatactggggaattaatattacagaatgagt
aatatattttgggtttgtatattcattcagtaggctctcgggtgaaggct
ttcatactgtagtgtattgaaaggtgctgatctggaagaactgatgttca
ggagagcttgaagagaatgttcagaaag
ctgacatgaaaaccgaaataaagtgaaaccaagagaagaaatgagaccta
aacattgctgtgcttgttcttgatttagagcctactcagaatatgcatga
ccaagtcggtctgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_56409796_56410940
seq2: B6Ng01-038F14.b_45_1172

seq1  GAATTCATTGATTTATTTTCAAAGCCAGACTACTTATTAAATAATTGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGATTTATTTTCAAAGCCAGACTACTTATTAAATAATTGGCA  50

seq1  AATGTGTGATTCCTCTATGATATTGTTAGTAAATGAAGAATGAGTGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGATTCCTCTATGATATTGTTAGTAAATGAAGAATGAGTGGAAT  100

seq1  CCAGAAAAGATAAGCAGAGAGAACTGATGTGTAAGTTACAGAAGTGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAAGATAAGCAGAGAGAACTGATGTGTAAGTTACAGAAGTGGAGG  150

seq1  CAGATCTTACCATTCATTTAGAGATGTGATCATGTGAGGCAAGAATCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTACCATTCATTTAGAGATGTGATCATGTGAGGCAAGAATCATG  200

seq1  GGAAAAGTAGCCATCCAAGAAAAAAGGATCAGGTTACCAAAGATCATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGTAGCCATCCAAGAAAAAAGGATCAGGTTACCAAAGATCATTCC  250

seq1  AGCTCACGTAAGGATACTTTTGTGTTGGAAGTGTTAAGAACACTGGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACGTAAGGATACTTTTGTGTTGGAAGTGTTAAGAACACTGGCTTC  300

seq1  TCTTCCATAGGCTTCTTCAATTCCTAGCACACACATGGAAGCTCATAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATAGGCTTCTTCAATTCCTAGCACACACATGGAAGCTCATAACT  350

seq1  GTCCTTCACTCCAGTTCTCAGAGATCTGACACCCTCATGATTAACATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCACTCCAGTTCTCAGAGATCTGACACCCTCATGATTAACATTAA  400

seq1  ATAAAGAGTTTTGAAAAAAAGATACAAATATATTCATCAGAAAACTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGTTTTGAAAAAAAGATACAAATATATTCATCAGAAAACTGAAG  450

seq1  ATAGCCAAGGTACGTATCAGTTATCAGTCACTTTTCTATGCACCACACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAAGGTACGTATCAGTTATCAGTCACTTTTCTATGCACCACACCT  500

seq1  ATATTAAGCTCTAATGCATAGTTAGCATTTTTATTTTATGCTTCAAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGCTCTAATGCATAGTTAGCATTTTTATTTTATGCTTCAAATAA  550

seq1  AAGAAATGAAACAGTGATATTCATGAGACCCACATAAATAGATCAGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGAAACAGTGATATTCATGAGACCCACATAAATAGATCAGTCAG  600

seq1  GGCTAAACACTGGAATCACTGGTATGTGACACAGGATGGACTTCAACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAACACTGGAATCACTGGTATGTGACACAGGATGGACTTCAACTAG  650

seq1  AGTCATTTGTATTGCAATTCTGCATTCGTTGCTATCTAGAAAAGGCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTGTATTGCAATTCTGCATTCGTTGCTATCTAGAAAAGGCATCT  700

seq1  ATTTAATTGTAAGTATAGTCCATTACAGAGATGTGTCTCAGTTAACTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTGTAAGTATAGTCCATTACAGAGATGTGTCTCAGTTAACTTTA  750

seq1  TTGCATCATAAATCACTCGAGAGTTTAGTGGCTTAAAACAAAACAGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCATAAATCACTCGAGAGTTTAGTGGCTTAAAACAAAACAGAATT  800

seq1  TTTTTGCAGCTAAGCAGTTGACAAATCAGATCTATGTATGTGATTTTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCAGCTAAGCAGTTGACAAATCAGATCTATGTATGTGATTTTGGC  850

seq1  TGGGA-TTTTTGGAAGTTCTTCAATGGTCTTACTCATGTATAGAGATGTT  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTTTTGGAAGTTCTTCAATGGTCTTACTCATGTATAGAGATGTT  900

seq1  GTAGAATGAAATATCTGCTAGGGCATTTGGCCTAGAGACTTGGAAGCCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATGAAATATCTGCTAGGGCATTTGGCCTAGAGACTTGGAAGCCTG  950

seq1  CATGTGACTGTTAGGGTCTCACAACTGGGGAATTAAATATTACAGAATGA  999
      |||||||||||||||||||||  ||||||||||| |||||||||||||||
seq2  CATGTGACTGTTAGGGTCTCA-TACTGGGGAATT-AATATTACAGAATGA  998

seq1  GTTAAATATATTTTGGGTTTGTATATTCCATTCAGTAGGCTCTCGTGTTG  1049
      ||  ||||||||||||||||||||||| ||||||||||||||||| | ||
seq2  GT--AATATATTTTGGGTTTGTATATT-CATTCAGTAGGCTCTCG-GGTG  1044

seq1  AAGGCTTTTCAATACCTGGTAGTGTATTGAAAGGTGGCTGGATCTGGAAG  1099
      ||||||||   ||||   ||||||||||||||||| ||| ||||||||||
seq2  AAGGCTTT--CATAC--TGTAGTGTATTGAAAGGT-GCT-GATCTGGAAG  1088

seq1  ACATGATGTTCAGGAGGAAGCTAGGAAGAGACATGTTCGAAGAAAG  1145
      |  |||||||||||||  ||||  ||||||| ||||||  ||||||
seq2  AACTGATGTTCAGGAG--AGCT-TGAAGAGA-ATGTTC--AGAAAG  1128

seq1: chr5_56558014_56558163
seq2: B6Ng01-038F14.g_72_221 (reverse)

seq1  ACACACACACACACACACACACATACACACACACACACAGACCGACTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACATACACACACACACACAGACCGACTTGG  50

seq1  TCATGCATATTCTGAGTAGGCTCTAAATCAAGAACAAGCACAGCAATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATATTCTGAGTAGGCTCTAAATCAAGAACAAGCACAGCAATGTT  100

seq1  TAGGTCTCATTTCTTCTCTTGGTTTCACTTTATTTCGGTTTTCATGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTCATTTCTTCTCTTGGTTTCACTTTATTTCGGTTTTCATGTCAG  150