BAC Information

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BAC

Clone NameB6Ng01-038I05
Chromosome5 (Build37)
Map Location 138,786,116 - 138,787,069
singlet/doubletsinglet
Overlap genenone
Upstream geneEphb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3
Downstream geneGot2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038I05.bB6Ng01-038I05.g
ACCDH866052DH866053
length1,264953
definitionDH866052|Mus musculus domesticus DNA, BAC clone: B6Ng01-038I05, 5' end.DH866053|Mus musculus domesticus DNA, BAC clone: B6Ng01-038I05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtgaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatatattgt
atgataaaaacttcaaatctctgaagaaagaaattaaagaagatatcaga
agatgaaaagatctcccatgctcatggattggcaggatcaacattgtaaa
aatggttatcttgccaaaagcaatctacagattcaatgcaatccccatta
aaattccaactcaattcttcaacgaattagaaggagcaatttgcaaattc
atctggaataacaaaaaacctaggattgcaaaaagtcttctcaaggataa
aagaacctctggtggaatcaccatgccagacctaaagctatactacagag
caattgtgataaaaactgcagggtactagtatagagacagacaagtagac
caatggaatagaattgaagacccagaaatgaacctacacacctatggtca
cttgatcttcgacaagggatcaaaaaccatccagtggaagaaagacagca
ttttcaacaattggtgctggcacaactggttgtatcctatagaagaatgc
gaatcgatccatacttatctccttgtactaagtcaaatctaagtggatca
aggaacttcacataaaccagagaaactgaaacttatagaggagaaagtgg
ggaaaagcttgaagatatgggcccaggtaaaattcctgaacagaacagca
tgctgtgctgtaagatcaagaattgacaaatgggacttatgaactccaag
tttgcaagcaagaccgtcataagacaaaagaccccacgattgggaaagac
tacatctaatcgaatgatattcacatttaagatcgaagggacttgaatcg
aataccccttaaaa
gaattcatagcccagccctctgctgggagggggagctggaccatcctcag
gcactctccggaagctgccactggctgttgcttttcccaactactcacct
ctgggaagaccagcaactaggcccccaagaatcctccacagactcctctg
cctccagtcaccccgagtctgacttccttggtatagtctctgccaccctc
agccttattcccttgacaattctgcttgtggtgtctccatagtctttctc
accttccctatgtctgctgcatgtccccttgcaacttgctgggtgtctgt
accccagcatagccctcctggcagtctagattcataactaccacatcctg
agaagcctgtaccacattctgaattggcccaagatcttttcttcctcagt
ccaacctcactccaaccagtggcaagcctatggaagctgtgggactgagg
ggttgtgtgaccttgaatcaatggctagcctttagacctcaaaccattgc
ctagtgcattgttctcaggttctcaactccagcttcctggggccaccatg
cataggaagtatccaaaagactgccaacaatgacaacaagctatggaata
tgaaaagaaaatcaggtctgagatcttggccagcaggaccagggagaagg
cccttgtcagggtggtgtggtgtgggaaaggtctgattggaacagtggag
cctttcctccttctttctattgcatgagatttttccaaagccccacaggg
gagtcacttttaaccatatcccccaaagcacaggacattaggtcttgtta
gcaaagttatggtgaagagggactaggtttccaaaccgaggttccagccc
acctctgcagacagggtcagtggcaaaaaggattctgtagatccactctt
aaccgatcagcatctgtgaaaaaaataacttgctcacaacacagtgatgg
ctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138786116_138787069
seq2: B6Ng01-038I05.g_69_1021

seq1  GAATTCATAGCCCAGCCCTCTGCTGGGAGGGGGAGCTGGACCATCCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGCCCAGCCCTCTGCTGGGAGGGGGAGCTGGACCATCCTCAG  50

seq1  GCACTCTCCGGAAGCTGCCACTGGCTGTTGCTTTTCCCAACTACTCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTCCGGAAGCTGCCACTGGCTGTTGCTTTTCCCAACTACTCACCT  100

seq1  CTGGGAAGACCAGCAACTAGGCCCCCAAGAATCCTCCACAGACTCCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGACCAGCAACTAGGCCCCCAAGAATCCTCCACAGACTCCTCTG  150

seq1  CCTCCAGTCACCCCGAGTCTGACTTCCTTGGTATAGTCTCTGCCACCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGTCACCCCGAGTCTGACTTCCTTGGTATAGTCTCTGCCACCCTC  200

seq1  AGCCTTATTCCCTTGACAATTCTGCTTGTGGTGTCTCCATAGTCTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTATTCCCTTGACAATTCTGCTTGTGGTGTCTCCATAGTCTTTCTC  250

seq1  ACCTTCCCTATGTCTGCTGCATGTCCCCTTGCAACTTGCTGGGTGTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCCTATGTCTGCTGCATGTCCCCTTGCAACTTGCTGGGTGTCTGT  300

seq1  ACCCCAGCATAGCCCTCCTGGCAGTCTAGATTCATAACTACCACATCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCATAGCCCTCCTGGCAGTCTAGATTCATAACTACCACATCCTG  350

seq1  AGAAGCCTGTACCACATTCTGAATTGGCCCAAGATCTTTTCTTCCTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTGTACCACATTCTGAATTGGCCCAAGATCTTTTCTTCCTCAGT  400

seq1  CCAACCTCACTCCAACCAGTGGCAAGCCTATGGAAGCTGTGGGACTGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTCACTCCAACCAGTGGCAAGCCTATGGAAGCTGTGGGACTGAGG  450

seq1  GGTTGTGTGACCTTGAATCAATGGCTAGCCTTTAGACCTCAAACCATTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGTGACCTTGAATCAATGGCTAGCCTTTAGACCTCAAACCATTGC  500

seq1  CTAGTGCATTGTTCTCAGGTTCTCAACTCCAGCTTCCTGGGGCCACCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCATTGTTCTCAGGTTCTCAACTCCAGCTTCCTGGGGCCACCATG  550

seq1  CATAGGAAGTATCCAAAAGACTGCCAACAATGACAACAAGCTATGGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAAGTATCCAAAAGACTGCCAACAATGACAACAAGCTATGGAATA  600

seq1  TGAAAAGAAAATCAGGTCTGAGATCTTGGCCAGCAGGACCAGGGAGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAAAATCAGGTCTGAGATCTTGGCCAGCAGGACCAGGGAGAAGG  650

seq1  CCCTTGTCAGGGTGGTGTGGTGTGGGAAAGGTCTGATTGGAACAGTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTCAGGGTGGTGTGGTGTGGGAAAGGTCTGATTGGAACAGTGGAG  700

seq1  CC-TTCCTCCTTCTTTCTATTGCATGAGA-TTTTCCAAAGCCCCACAGGG  748
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTTTCCTCCTTCTTTCTATTGCATGAGATTTTTCCAAAGCCCCACAGGG  750

seq1  GAGTCAC-TTTAACCATATCCCCCAAAGCACAGGACATTAGGTC-TGTTA  796
      ||||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  GAGTCACTTTTAACCATATCCCCCAAAGCACAGGACATTAGGTCTTGTTA  800

seq1  GCAAAGTTATGGTGAAGAGGGACAAGGTTTCCAAACCGAGGTTCCAGCCA  846
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  GCAAAGTTATGGTGAAGAGGGACTAGGTTTCCAAACCGAGGTTCCAGCCC  850

seq1  ACCTCTGCAGAACAGGGGTCAGTGGCAGAAAGGATTCTGTAGATCCACTC  896
      |||||||||| ||| |||||||||||| ||||||||||||||||||||||
seq2  ACCTCTGCAG-ACA-GGGTCAGTGGCAAAAAGGATTCTGTAGATCCACTC  898

seq1  TTAAACCGATTCAGCATCTGTGAAATAAAATAACTTGCTCACAAGACAGT  946
      || |||||| ||||||||||||||| |||||||||||||||||| |||||
seq2  TT-AACCGA-TCAGCATCTGTGAAA-AAAATAACTTGCTCACAACACAGT  945

seq1  GATGGCTG  954
      ||||||||
seq2  GATGGCTG  953