BAC Information

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BAC

Clone NameB6Ng01-039G23
Chromosome5 (Build37)
Map Location 7,481,730 - 7,626,345
singlet/doubletdoublet
Overlap genenone
Upstream geneEG435830, LOC100042651, 4921511H03Rik, LOC242823
Downstream geneLOC667767, EG546855, Steap4, Sri, LOC433840, Adam22, Dbf4, Slc25a40, Gm440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039G23.bB6Ng01-039G23.g
ACCDH866707DH866708
length1,0071,098
definitionDH866707|Mus musculus domesticus DNA, BAC clone: B6Ng01-039G23, 5' end.DH866708|Mus musculus domesticus DNA, BAC clone: B6Ng01-039G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,481,730 - 7,482,753)(7,625,246 - 7,626,345)
sequence
gaattctgtctttgtaggagcctagaaaaggttgagggtttggaaaaacc
atttttacccacaattatgaatatagtcaaggacaacagtgtcttatatt
tcctagggggcctttgtaggaggcatgaggccattagacacagctattgt
ccccaattcccatcatttctttgatctgatcaacttggttacctcaagcc
cttttaactgccatcttttgtgttcctggcctcatcagattaactggaca
aaatctaacatgtgcattatgataggttggattttttgtttgtttgtttg
gttggtttttggtattactctaggcatacccttaaaattcaatccaactc
ttatggttctagctatttgagtagtttaatttcctcatgtactcatactt
atagcaatttttattgtcataaattagtagcagtctagatccttttgaat
atttgaatgaaaatttaacatgcatataatgaacatataacaagtatatc
tatatgacatcatactagttagtaaaagaaagaatcttggagttgaacat
ggtgttttttttttcttttaatctcaactctagggggatagaggcaggca
aatacctgtgggataagcctattttatataatgagattctacctaaaaaa
aagggaggggtaaaaagggatctatcaagtcaattaagggaagaatctta
aatttatattcctataaatttaagtaactctaaaaaatatgaatccatgt
atgctattctgaaaacaagtaaagcaaaaacatcacaaatgggttaataa
ttgcagcggtttactgaaaccattttatacactctattgacattaaacat
gcatcataccatacaactttccagcataagaatgaaccttaatactaaaa
ccattcacttaaataacagtggattcaaatagaatacagaatgccaaagg
acctggaacaatcaacctcattgagaagatagaaaatggtgctctgactc
tcacaca

gaattctcaactgaggacttttgaatggccaaaagcacctagagaaatgt
tcaacatcctcagtcatcagggaaatacaaatcaaaacaaccctgaggtt
ccacctcacaccagtcagaatggctaagataaaacctcaggtgacagcag
atgctagcgaggatgtggagaaagaggaacacattgtgggattgcaaact
tgtacaaccactttggtaatcactctggaggttcctcagaaaaatggaca
cagtactacctgaggacacagctataccactcctggacttatacccaaaa
gatgctccaacatataacacagaccttttcttttcttttggtgcgtctaa
ataggaatcaagtcctgagctgataattgttccttccaatctcctaacag
tttctccctgatattcattagtttaactgctttttcttgggagtttgggg
taatgtttattcttctcactcctgtacttagtgtgtttatcaggaagtcc
catgaagctcctgcccaaagtcttactttctttccctttgcttatgtaat
acccttaccttctgtgatgaatatgcagtaagcttttcacttccctcttg
accctcatctctttcttgtttcattttttcctcacagctgtgagggttag
accattccctggtctaatttcccttcttagaaacttcagaaatgattgct
tttaagccaaagtctgaaacttaaatgaattcttaatatttatgtcctaa
tttgtctcaggctcacttttatatgttagataatactgatttgtaaaatt
taaaacttttcagatatacaaggaagtagaaagactatgtaacataccca
ccaatatattctctgttcagagttagcatttctgatatttatatatttgc
ttcaatttttgccataattatatatgttaaagtaagacctgaagccatcc
tcagttcatcccctttcatttgggccctagtagtaaccaccaaatctttt
tctttcatactctgtggggtttggagtgcaaaatgacagaggtgtgctat
ttgcaggacaaagtttctgcttggaaattgctttctagtgatctgagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_7481730_7482753
seq2: B6Ng01-039G23.b_42_1048

seq1  GAATTCTGTCTTTGTAGGAGCCTAGAAAAGGTTGAGGGTTTGGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTTTGTAGGAGCCTAGAAAAGGTTGAGGGTTTGGAAAAACC  50

seq1  ATTTTTACCCACAATTATGAATATAGTCAAGGACAACAGTGTCTTATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACCCACAATTATGAATATAGTCAAGGACAACAGTGTCTTATATT  100

seq1  TCCTAGGGGGCCTTTGTAGGAGGCATGAGGCCATTAGACACAGCTATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGGGGCCTTTGTAGGAGGCATGAGGCCATTAGACACAGCTATTGT  150

seq1  CCCCAATTCCCATCATTTCTTTGATCTGATCAACTTGGTTACCTCAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATTCCCATCATTTCTTTGATCTGATCAACTTGGTTACCTCAAGCC  200

seq1  CTTTTAACTGCCATCTTTTGTGTTCCTGGCCTCATCAGATTAACTGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAACTGCCATCTTTTGTGTTCCTGGCCTCATCAGATTAACTGGACA  250

seq1  AAATCTAACATGTGCATTATGATAGGTTGGATTTTTTGTTTGTTTGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAACATGTGCATTATGATAGGTTGGATTTTTTGTTTGTTTGTTTG  300

seq1  GTTGGTTTTTGGTATTACTCTAGGCATACCCTTAAAATTCAATCCAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTTTGGTATTACTCTAGGCATACCCTTAAAATTCAATCCAACTC  350

seq1  TTATGGTTCTAGCTATTTGAGTAGTTTAATTTCCTCATGTACTCATACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTTCTAGCTATTTGAGTAGTTTAATTTCCTCATGTACTCATACTT  400

seq1  ATAGCAATTTTTATTGTCATAAATTAGTAGCAGTCTAGATCCTTTTGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAATTTTTATTGTCATAAATTAGTAGCAGTCTAGATCCTTTTGAAT  450

seq1  ATTTGAATGAAAATTTAACATGCATATAATGAACATATAACAAGTATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATGAAAATTTAACATGCATATAATGAACATATAACAAGTATATC  500

seq1  TATATGACATCATACTAGTTAGTAAAAGAAAGAATCTTGGAGTTGAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGACATCATACTAGTTAGTAAAAGAAAGAATCTTGGAGTTGAACAT  550

seq1  GGTGTTTTTTTTTTCTTTTAATCTCAACTCTAGGGGGATAGAGGCAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTTTTTTTCTTTTAATCTCAACTCTAGGGGGATAGAGGCAGGCA  600

seq1  AATACCTGTGGGATAAGCCTATTTTATATAATGAGATTCTACCTAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTGTGGGATAAGCCTATTTTATATAATGAGATTCTACCTAAAAAA  650

seq1  AAGGGAGGGGTAAAAAGGGATCTATCAAGTCAATTAAGGGAAGAATCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGGGGTAAAAAGGGATCTATCAAGTCAATTAAGGGAAGAATCTTA  700

seq1  AATTTATATTCCTATAAATTTAAGTAACTCTAAAAAATATGAATCCATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATTCCTATAAATTTAAGTAACTCTAAAAAATATGAATCCATGT  750

seq1  ATGCTATTCTGAAAACAAGTAAAGCAAAAACATCACAAATGGGTTAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATTCTGAAAACAAGTAAAGCAAAAACATCACAAATGGGTTAATAA  800

seq1  TTGCAGCGGTTTACTGAAACCATTTTATAACACTCTATTGACATTAAACA  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTGCAGCGGTTTACTGAAACCATTTTAT-ACACTCTATTGACATTAAACA  849

seq1  TGCATCAATACCATACAACTTTCCAGCATAAAGAATGAACCTTAATAACT  900
      |||||| |||||||||||||||||||||| |||||||||||||||| |||
seq2  TGCATC-ATACCATACAACTTTCCAGCAT-AAGAATGAACCTTAAT-ACT  896

seq1  AAAACTATTCACTTAAGATAACAGTGGAGTTCAAAATAGAATACAGAGTG  950
      ||||| |||||||||| ||||||||||| ||| |||||||||||||| ||
seq2  AAAACCATTCACTTAA-ATAACAGTGGA-TTC-AAATAGAATACAGAATG  943

seq1  ACAAAAGGACCTGGAAACAATCAAGCTCATTGAAGAAGAATAGGAAAAAT  1000
       | ||||||||||| ||||||||| ||||||| ||||| ||||  |||||
seq2  -CCAAAGGACCTGG-AACAATCAACCTCATTG-AGAAG-ATAG--AAAAT  987

seq1  GGTGTTCTCTGAACTCTAGACACA  1024
      ||||  ||||| |||||  |||||
seq2  GGTG--CTCTG-ACTCT-CACACA  1007


seq1: chr5_7625246_7626345
seq2: B6Ng01-039G23.g_67_1164 (reverse)

seq1  GCTCAGATCACCTTAG-AAGCAATTTCCAAGCAG-AACTTTGTCCCTGCC  48
      |||||||||||  ||| ||||||||||||||||| |||||||| |||| |
seq2  GCTCAGATCAC--TAGAAAGCAATTTCCAAGCAGAAACTTTGT-CCTG-C  46

seq1  AAATAGCACACCTCTGTCATTTTGCCACTCCAAA-CCCACAGGGTATGAA  97
      |||||||||||||||||||||||| ||||||||| ||||||| |||||||
seq2  AAATAGCACACCTCTGTCATTTTG-CACTCCAAACCCCACAGAGTATGAA  95

seq1  AGAAAAAGATATGGTGGTTACTACTAGGGCCCAAATGGAAGGGGATGAAC  147
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  AGAAAAAGATTTGGTGGTTACTACTAGGGCCCAAATGAAAGGGGATGAAC  145

seq1  TGAGGATGGCTTCAGGTCTTACTTTAACATATATAATTATGGCAAAAATT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGGCTTCAGGTCTTACTTTAACATATATAATTATGGCAAAAATT  195

seq1  GAAGCAAATATATAAATATCAGAAATGCTAACTCTGAACAGAGAATATAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAATATATAAATATCAGAAATGCTAACTCTGAACAGAGAATATAT  245

seq1  TGGTGGGTATGTTACATAGTCTTTCTACTTCCTTGTATATCTGAAAAGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGTATGTTACATAGTCTTTCTACTTCCTTGTATATCTGAAAAGTT  295

seq1  TTAAATTTTACAAATCAGTATTATCTAACATATAAAAGTGAGCCTGAGAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTTACAAATCAGTATTATCTAACATATAAAAGTGAGCCTGAGAC  345

seq1  AAATTAGGACATAAATATTAAGAATTCATTTAAGTTTCAGACTTTGGCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGGACATAAATATTAAGAATTCATTTAAGTTTCAGACTTTGGCTT  395

seq1  AAAAGCAATCATTTCTGAAGTTTCTAAGAAGGGAAATTAGACCAGGGAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAATCATTTCTGAAGTTTCTAAGAAGGGAAATTAGACCAGGGAAT  445

seq1  GGTCTAACCCTCACAGCTGTGAGGAAAAAATGAAACAAGAAAGAGATGAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAACCCTCACAGCTGTGAGGAAAAAATGAAACAAGAAAGAGATGAG  495

seq1  GGTCAAGAGGGAAGTGAAAAGCTTACTGCATATTCATCACAGAAGGTAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGAGGGAAGTGAAAAGCTTACTGCATATTCATCACAGAAGGTAAG  545

seq1  GGTATTACATAAGCAAAGGGAAAGAAAGTAAGACTTTGGGCAGGAGCTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTACATAAGCAAAGGGAAAGAAAGTAAGACTTTGGGCAGGAGCTTC  595

seq1  ATGGGACTTCCTGATAAACACACTAAGTACAGGAGTGAGAAGAATAAACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACTTCCTGATAAACACACTAAGTACAGGAGTGAGAAGAATAAACA  645

seq1  TTACCCCAAACTCCCAAGAAAAAGCAGTTAAACTAATGAATATCAGGGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCAAACTCCCAAGAAAAAGCAGTTAAACTAATGAATATCAGGGAG  695

seq1  AAACTGTTAGGAGATTGGAAGGAACAATTATCAGCTCAGGACTTGATTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTAGGAGATTGGAAGGAACAATTATCAGCTCAGGACTTGATTCC  745

seq1  TATTTAGACGCACCAAAAGAAAAGAAAAGGTCTGTGTTATATGTTGGAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGACGCACCAAAAGAAAAGAAAAGGTCTGTGTTATATGTTGGAGC  795

seq1  ATCTTTTGGGTATAAGTCCAGGAGTGGTATAGCTGTGTCCTCAGGTAGTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGGGTATAAGTCCAGGAGTGGTATAGCTGTGTCCTCAGGTAGTA  845

seq1  CTGTGTCCATTTTTCTGAGGAACCTCCAGAGTGATTACCAAAGTGGTTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCATTTTTCTGAGGAACCTCCAGAGTGATTACCAAAGTGGTTGT  895

seq1  ACAAGTTTGCAATCCCACAATGTGTTCCTCTTTCTCCACATCCTCGCTAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTGCAATCCCACAATGTGTTCCTCTTTCTCCACATCCTCGCTAG  945

seq1  CATCTGCTGTCACCTGAGGTTTTATCTTAGCCATTCTGACTGGTGTGAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGCTGTCACCTGAGGTTTTATCTTAGCCATTCTGACTGGTGTGAGG  995

seq1  TGGAACCTCAGGGTTGTTTTGATTTGTATTTCCCTGATGACTGAGGATGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCTCAGGGTTGTTTTGATTTGTATTTCCCTGATGACTGAGGATGT  1045

seq1  TGAACATTTCTCTAGGTGCTTTTGGCCATTCAAAAGTCCTCAGTTGAGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTTCTCTAGGTGCTTTTGGCCATTCAAAAGTCCTCAGTTGAGAA  1095

seq1  TTC  1100
      |||
seq2  TTC  1098


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